├── .Rbuildignore ├── .gitignore ├── .travis.yml ├── Makefile ├── README.md ├── description-addon ├── docs ├── addRecruitmentCurve.md ├── addforecast.md ├── b0plot.md ├── b0table.md ├── bc.md ├── c.sam.md ├── catchbyfleetplot.md ├── catchbyfleettable.md ├── catchplot.md ├── catchtable.md ├── caytable.md ├── clean.void.catches.md ├── coef.sam.md ├── componentplot.md ├── corplot.md ├── corplotcommon.md ├── dataplot.md ├── defcon.md ├── defpar.md ├── deterministicReferencepoints.md ├── deterministicReferencepoints.sam.md ├── empirobscorrplot.md ├── equilibriumbiomassplot.md ├── equilibriumbiomasstable.md ├── faytable.md ├── fbarplot.md ├── fbartable.md ├── fitfromweb.md ├── fitplot.md ├── forecast.md ├── forecastMSY.md ├── fselectivityplot.md ├── generationlengthplot.md ├── generationlengthtable.md ├── getAllDerivedValues.md ├── getFleet.md ├── getLowerBounds.md ├── getResidualFleets.md ├── getUpperBounds.md ├── grad.md ├── hcr.md ├── ibc.md ├── icesAdviceRule.md ├── iibc.md ├── index.md ├── is.whole.positive.number.md ├── jacobian.md ├── jit.md ├── leaveout.md ├── lifeexpectancyplot.md ├── lifeexpectancytable.md ├── loadConf.md ├── logLik.sam.md ├── modelDescription.md ├── modelVersionInfo.md ├── modelforecast.md ├── modeltable.md ├── mohn.md ├── nobs.sam.md ├── nscodConf.md ├── nscodData.md ├── nscodParameters.md ├── ntable.md ├── obscorrplot.md ├── obscov.md ├── parplot.md ├── partable.md ├── plot.hcr.md ├── plot.sam.md ├── plot.samforecast.md ├── plot.samres.md ├── plot.samset.md ├── plot.samypr.md ├── plotby.md ├── plotit.md ├── print.hcr.md ├── print.sam.md ├── print.sam_referencepoints.md ├── print.samcoef.md ├── print.samforecast.md ├── print.samres.md ├── print.samset.md ├── print.samypr.md ├── procres.md ├── qtable.md ├── qtable.sam.md ├── qtableplot.md ├── read.data.files.md ├── read.ices.md ├── read.surveys.md ├── read.table.nowarn.md ├── recplot.md ├── rectable.md ├── reduce.md ├── referencepoints.md ├── refit.md ├── residuals.sam.md ├── retro.md ├── rmaxplot.md ├── rmaxtable.md ├── rmvnorm.md ├── runwithout.md ├── sam.fit.md ├── saveConf.md ├── sdplot.md ├── setS.md ├── setSeq.md ├── setup.sam.data.md ├── simstudy.md ├── simulate.sam.md ├── sprplot.md ├── sprtable.md ├── srplot.md ├── ssbplot.md ├── ssbtable.md ├── stochasticReferencepoints.md ├── stockassessment-deprecated.md ├── summary.sam.md ├── tableit.md ├── tsbplot.md ├── tsbtable.md ├── write.data.files.md ├── write.ices.md ├── write.surveys.md ├── yearslostplot.md ├── yearslosttable.md ├── ypr.md ├── yprplot.md └── yprtable.md ├── figs ├── catch.png ├── fbar.png ├── fig.R ├── lo.png ├── rec.png ├── res.png ├── resp.png ├── retro.png └── ssb.png ├── old └── bluewhiting │ ├── Makefile │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── la.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── res.out │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── stockassessment ├── DESCRIPTION ├── NAMESPACE ├── NEWS ├── R │ ├── addRecruitmentCurve.R │ ├── conf.R │ ├── deterministic_referencepoints.R │ ├── forecast.R │ ├── hcr.R │ ├── init.R │ ├── methods.R │ ├── modelforecast.R │ ├── plot.R │ ├── reading.R │ ├── referencepoints.R │ ├── relist.R │ ├── retro.R │ ├── run.R │ ├── sim.R │ ├── splineKnots.R │ ├── stochastic_referencepoints.R │ ├── tables.R │ ├── text.R │ └── writing.R ├── cleanup ├── configure ├── configure.ac ├── data │ ├── nscodConf.RData │ ├── nscodData.RData │ └── nscodParameters.RData ├── inst │ ├── CITATION │ ├── doc │ │ ├── simulate.pdf │ │ └── stockassessment.pdf │ ├── flr_convenience.R │ ├── ices_values.R │ ├── include │ │ ├── SAM.hpp │ │ ├── SAM │ │ │ ├── biopar.hpp │ │ │ ├── convenience.hpp │ │ │ ├── define.hpp │ │ │ ├── derived.hpp │ │ │ ├── equilibrium.hpp │ │ │ ├── f.hpp │ │ │ ├── forecast.hpp │ │ │ ├── forecastsim.hpp │ │ │ ├── incidence.hpp │ │ │ ├── logspace.hpp │ │ │ ├── mvmix.hpp │ │ │ ├── n.hpp │ │ │ ├── newton.hpp │ │ │ ├── obs.hpp │ │ │ ├── p.hpp │ │ │ ├── pnorm.hpp │ │ │ ├── predn.hpp │ │ │ ├── predobs.hpp │ │ │ ├── recruitment.hpp │ │ │ ├── referencepoints.hpp │ │ │ ├── refpointset.hpp │ │ │ ├── reproductive.hpp │ │ │ ├── spline.hpp │ │ │ ├── splinePenalty.hpp │ │ │ ├── survival.hpp │ │ │ └── toF.hpp │ │ ├── SAM_API.hpp │ │ └── SAM_preprocessor.h │ └── parse_src.R ├── man │ ├── addRecruitmentCurve.Rd │ ├── addforecast.Rd │ ├── b0plot.Rd │ ├── b0table.Rd │ ├── bc.Rd │ ├── c.sam.Rd │ ├── catchbyfleetplot.Rd │ ├── catchbyfleettable.Rd │ ├── catchplot.Rd │ ├── catchtable.Rd │ ├── caytable.Rd │ ├── clean.void.catches.Rd │ ├── coef.sam.Rd │ ├── componentplot.Rd │ ├── corplot.Rd │ ├── corplotcommon.Rd │ ├── dataplot.Rd │ ├── defcon.Rd │ ├── defpar.Rd │ ├── deterministicReferencepoints.Rd │ ├── deterministicReferencepoints.sam.Rd │ ├── empirobscorrplot.Rd │ ├── equilibriumbiomassplot.Rd │ ├── equilibriumbiomasstable.Rd │ ├── faytable.Rd │ ├── fbarplot.Rd │ ├── fbartable.Rd │ ├── fitfromweb.Rd │ ├── fitplot.Rd │ ├── forecast.Rd │ ├── forecastMSY.Rd │ ├── fselectivityplot.Rd │ ├── generationlengthplot.Rd │ ├── generationlengthtable.Rd │ ├── getAllDerivedValues.Rd │ ├── getFleet.Rd │ ├── getLowerBounds.Rd │ ├── getResidualFleets.Rd │ ├── getUpperBounds.Rd │ ├── grad.Rd │ ├── hcr.Rd │ ├── ibc.Rd │ ├── icesAdviceRule.Rd │ ├── iibc.Rd │ ├── is.whole.positive.number.Rd │ ├── jacobian.Rd │ ├── jit.Rd │ ├── leaveout.Rd │ ├── lifeexpectancyplot.Rd │ ├── lifeexpectancytable.Rd │ ├── loadConf.Rd │ ├── logLik.sam.Rd │ ├── modelDescription.Rd │ ├── modelVersionInfo.Rd │ ├── modelforecast.Rd │ ├── modeltable.Rd │ ├── mohn.Rd │ ├── nobs.sam.Rd │ ├── nscodConf.Rd │ ├── nscodData.Rd │ ├── nscodParameters.Rd │ ├── ntable.Rd │ ├── obscorrplot.Rd │ ├── obscov.Rd │ ├── parplot.Rd │ ├── partable.Rd │ ├── plot.hcr.Rd │ ├── plot.sam.Rd │ ├── plot.samforecast.Rd │ ├── plot.samres.Rd │ ├── plot.samset.Rd │ ├── plot.samypr.Rd │ ├── plotby.Rd │ ├── plotit.Rd │ ├── predstdplot.Rd │ ├── print.hcr.Rd │ ├── print.sam.Rd │ ├── print.sam_referencepoints.Rd │ ├── print.samcoef.Rd │ ├── print.samforecast.Rd │ ├── print.samres.Rd │ ├── print.samset.Rd │ ├── print.samypr.Rd │ ├── procres.Rd │ ├── qtable.Rd │ ├── qtable.sam.Rd │ ├── qtableplot.Rd │ ├── read.data.files.Rd │ ├── read.ices.Rd │ ├── read.surveys.Rd │ ├── read.table.nowarn.Rd │ ├── recplot.Rd │ ├── rectable.Rd │ ├── reduce.Rd │ ├── referencepoints.Rd │ ├── refit.Rd │ ├── residplot.Rd │ ├── residuals.sam.Rd │ ├── retro.Rd │ ├── rmaxplot.Rd │ ├── rmaxtable.Rd │ ├── rmvnorm.Rd │ ├── runwithout.Rd │ ├── sam.fit.Rd │ ├── saveConf.Rd │ ├── sdplot.Rd │ ├── setS.Rd │ ├── setSeq.Rd │ ├── setup.sam.data.Rd │ ├── simstudy.Rd │ ├── simulate.sam.Rd │ ├── sprplot.Rd │ ├── sprtable.Rd │ ├── srplot.Rd │ ├── ssbplot.Rd │ ├── ssbtable.Rd │ ├── stochasticReferencepoints.Rd │ ├── stockassessment-deprecated.Rd │ ├── summary.sam.Rd │ ├── tableit.Rd │ ├── tsbplot.Rd │ ├── tsbtable.Rd │ ├── write.data.files.Rd │ ├── write.ices.Rd │ ├── write.surveys.Rd │ ├── yearslostplot.Rd │ ├── yearslosttable.Rd │ ├── ypr.Rd │ ├── yprplot.Rd │ └── yprtable.Rd ├── src │ ├── Makevars.in │ ├── Makevars.win │ ├── TMB.cpp │ ├── TMB.h │ ├── jacobian.cpp │ ├── main.cpp │ ├── perRecruit.cpp │ ├── spline.cpp │ └── stockassessment.cpp └── tests │ ├── AAAtest-all.R │ ├── compare.fits.R │ ├── mack │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── fit.expected.Rdata │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── script.R │ ├── survey.dat │ ├── sw.dat │ ├── tag.dat │ └── tag2.dat │ ├── nscod │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── fit.expected.Rdata │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── mo_raw.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── script.R │ ├── survey.dat │ └── sw.dat │ ├── nsher │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── fit.expected.Rdata │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── script.R │ ├── survey.dat │ └── sw.dat │ ├── run.compare.R │ └── testthat │ ├── test-mack.R │ ├── test-nscod.R │ └── test-nsher.R ├── testmore ├── API │ ├── res.EXP │ └── script.R ├── Makefile ├── NSAS │ ├── caa_waa.r │ ├── fakesplit.RData │ ├── ignore │ ├── nosplit.RData │ ├── old │ │ ├── CANUM.txt │ │ ├── FLEET.txt │ │ ├── FPROP.txt │ │ ├── MATPROP.txt │ │ ├── MPROP.txt │ │ ├── NATMOR.txt │ │ ├── WECA.txt │ │ └── WEST.txt │ ├── script.R │ └── split │ │ ├── cn_A.dat │ │ ├── cn_B.dat │ │ ├── cn_C.dat │ │ ├── cn_D.dat │ │ ├── cw_A.dat │ │ ├── cw_B.dat │ │ ├── cw_C.dat │ │ └── cw_D.dat ├── NSAS_comps │ ├── data │ │ ├── CANUM.txt │ │ ├── FLEET.txt │ │ ├── FPROP.txt │ │ ├── MATPROP.txt │ │ ├── MPROP.txt │ │ ├── NATMOR.txt │ │ ├── WECA.txt │ │ ├── WEST.txt │ │ └── lai.txt │ ├── res.EXP │ └── script.R ├── WBSS │ ├── old │ │ ├── CATON.LOW │ │ ├── cn.dat │ │ ├── cw.dat │ │ ├── mo.dat │ │ ├── nm.dat │ │ ├── pf.dat │ │ ├── pm.dat │ │ ├── survey.dat │ │ └── sw.dat │ ├── res.EXP │ ├── script.R │ └── split │ │ ├── cn_A.dat │ │ ├── cn_C.dat │ │ ├── cn_D.dat │ │ ├── cn_F.dat │ │ ├── cn_all.dat │ │ ├── cw_A.dat │ │ ├── cw_C.dat │ │ ├── cw_D.dat │ │ ├── cw_F.dat │ │ └── cw_all.dat ├── WBSS2 │ ├── old │ │ ├── CATON.LOW │ │ ├── cn.dat │ │ ├── cw.dat │ │ ├── mo.dat │ │ ├── nm.dat │ │ ├── pf.dat │ │ ├── pm.dat │ │ ├── survey.dat │ │ └── sw.dat │ ├── res.EXP │ ├── script.R │ └── split │ │ ├── cn_A.dat │ │ ├── cn_C.dat │ │ ├── cn_D.dat │ │ ├── cn_F.dat │ │ ├── cn_all.dat │ │ ├── cw_A.dat │ │ ├── cw_C.dat │ │ ├── cw_D.dat │ │ ├── cw_F.dat │ │ └── cw_all.dat ├── WBSS3 │ ├── old │ │ ├── CATON.LOW │ │ ├── cn.dat │ │ ├── cw.dat │ │ ├── mo.dat │ │ ├── nm.dat │ │ ├── pf.dat │ │ ├── pm.dat │ │ ├── survey.dat │ │ └── sw.dat │ ├── res.EXP │ ├── script.R │ └── split │ │ ├── cn_A.dat │ │ ├── cn_C.dat │ │ ├── cn_D.dat │ │ ├── cn_F.dat │ │ ├── cn_all.dat │ │ ├── cw_A.dat │ │ ├── cw_C.dat │ │ ├── cw_D.dat │ │ ├── cw_F.dat │ │ └── cw_all.dat ├── WBSS3a │ ├── ignore │ ├── old │ │ ├── CATON.LOW │ │ ├── cn.dat │ │ ├── cw.dat │ │ ├── mo.dat │ │ ├── nm.dat │ │ ├── pf.dat │ │ ├── pm.dat │ │ ├── survey.dat │ │ └── sw.dat │ ├── res.EXP │ ├── script.R │ └── split │ │ ├── cn_A.dat │ │ ├── cn_C.dat │ │ ├── cn_D.dat │ │ ├── cn_F.dat │ │ ├── cn_all.dat │ │ ├── cw_A.dat │ │ ├── cw_C.dat │ │ ├── cw_D.dat │ │ ├── cw_F.dat │ │ └── cw_all.dat ├── WBSS_sum │ ├── dat │ │ ├── cn.dat │ │ ├── cn_A.dat │ │ ├── cn_C.dat │ │ ├── cn_D.dat │ │ ├── cn_F.dat │ │ ├── cw.dat │ │ ├── cw_A.dat │ │ ├── cw_C.dat │ │ ├── cw_D.dat │ │ ├── cw_F.dat │ │ ├── dw.dat │ │ ├── lf.dat │ │ ├── lw.dat │ │ ├── mo.dat │ │ ├── model.cfg │ │ ├── nm.dat │ │ ├── pf.dat │ │ ├── pm.dat │ │ ├── survey.dat │ │ └── sw.dat │ ├── res.EXP │ └── script.R ├── alnar │ ├── res.EXP │ └── script.R ├── alnid │ ├── res.EXP │ └── script.R ├── alnus │ ├── res.EXP │ └── script.R ├── bfte2014 │ ├── bfte2014-CANUM-inflated.txt │ ├── bfte2014-CANUM-reported.txt │ ├── bfte2014-CATON.txt │ ├── bfte2014-DISNUM.txt │ ├── bfte2014-DISTON.txt │ ├── bfte2014-FPROP.txt │ ├── bfte2014-INDEX.txt │ ├── bfte2014-LANUM.txt │ ├── bfte2014-LATON.txt │ ├── bfte2014-MATPROP.txt │ ├── bfte2014-MPROP.txt │ ├── bfte2014-NATMOR.txt │ ├── bfte2014-WECA.txt │ ├── bfte2014-WEDIS.txt │ ├── bfte2014-WELAND.txt │ ├── bfte2014-WEST.txt │ ├── index.txt │ ├── res.EXP │ └── script.R ├── codIN3Ben │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── model.cfg │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── forecast_WBSS │ ├── old │ │ ├── CATON.LOW │ │ ├── cn.dat │ │ ├── cw.dat │ │ ├── mo.dat │ │ ├── nm.dat │ │ ├── pf.dat │ │ ├── pm.dat │ │ ├── survey.dat │ │ └── sw.dat │ ├── res.EXP │ ├── script.R │ └── split │ │ ├── cn_A.dat │ │ ├── cn_C.dat │ │ ├── cn_D.dat │ │ ├── cn_F.dat │ │ ├── cn_all.dat │ │ ├── cw_A.dat │ │ ├── cw_C.dat │ │ ├── cw_D.dat │ │ ├── cw_F.dat │ │ └── cw_all.dat ├── forecast_mack │ ├── res.EXP │ └── script.R ├── forecast_nscod │ ├── res.EXP │ └── script.R ├── forecast_nsher │ ├── res.EXP │ └── script.R ├── fromSEXP │ ├── res.EXP │ └── script.R ├── herringVar │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── modelConf.cfg │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ ├── sw.dat │ ├── varCommercial.txt │ ├── varSurvey1.txt │ ├── varSurvey2.txt │ └── varSurvey3.txt ├── jacobian │ ├── res.EXP │ └── script.R ├── mack │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ ├── sw.dat │ └── tag.dat ├── neaHaddockPredVar │ ├── cn.dat │ ├── conf.cfg │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── nscod │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── mo_raw.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── scriptcc.R │ ├── survey.dat │ └── sw.dat ├── nscodFidx │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── mo_raw.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── nscodSR3 │ ├── res.EXP │ └── script.R ├── nscodXtraSd │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── model.cfg │ ├── model2.cfg │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── nscodbiopro │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── nscodcovar │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── mo_raw.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── nscodsw │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── nscodswcwmofor │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── nsher │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── parallel │ ├── WHITEHAKE_cn.dat │ ├── WHITEHAKE_cw.dat │ ├── WHITEHAKE_dw.dat │ ├── WHITEHAKE_lf.dat │ ├── WHITEHAKE_lw.dat │ ├── WHITEHAKE_mo.dat │ ├── WHITEHAKE_nm.dat │ ├── WHITEHAKE_pf.dat │ ├── WHITEHAKE_pm.dat │ ├── WHITEHAKE_survey.dat │ ├── WHITEHAKE_sw.dat │ ├── model.cfg │ ├── res.EXP │ └── script.R ├── plots │ ├── res.EXP │ └── script.R ├── revdep │ ├── res.EXP │ └── script.R ├── sepF │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── modelConf.cfg │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── script.R │ ├── survey.dat │ └── sw.dat ├── tables │ ├── res.EXP │ └── script.R └── write │ ├── mf │ ├── cn.dat │ ├── cn_A.dat │ ├── cn_C.dat │ ├── cn_D.dat │ ├── cn_F.dat │ ├── cn_all.dat │ ├── cw.dat │ ├── cw_A.dat │ ├── cw_C.dat │ ├── cw_D.dat │ ├── cw_F.dat │ ├── cw_all.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── survey.dat │ └── sw.dat │ ├── mfs │ ├── cn.dat │ ├── cn_A.dat │ ├── cn_C.dat │ ├── cn_D.dat │ ├── cn_F.dat │ ├── cw.dat │ ├── cw_A.dat │ ├── cw_C.dat │ ├── cw_D.dat │ ├── cw_F.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── survey.dat │ └── sw.dat │ ├── res.EXP │ ├── script.R │ ├── sf │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── survey.dat │ └── sw.dat │ └── test.dat ├── vignettes ├── nsher │ ├── cn.dat │ ├── cw.dat │ ├── dw.dat │ ├── lf.dat │ ├── lw.dat │ ├── mo.dat │ ├── nm.dat │ ├── pf.dat │ ├── pm.dat │ ├── res.EXP │ ├── res.out │ ├── survey.dat │ └── sw.dat ├── simulate.Rmd └── stockassessment.Rnw └── webteststocklist /.Rbuildignore: -------------------------------------------------------------------------------- 1 | ^.travis\..yml$ 2 | -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/.travis.yml -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/README.md -------------------------------------------------------------------------------- /description-addon: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/description-addon -------------------------------------------------------------------------------- /docs/addRecruitmentCurve.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/addRecruitmentCurve.md -------------------------------------------------------------------------------- /docs/addforecast.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/addforecast.md -------------------------------------------------------------------------------- /docs/b0plot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/b0plot.md -------------------------------------------------------------------------------- /docs/b0table.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/b0table.md -------------------------------------------------------------------------------- /docs/bc.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/bc.md -------------------------------------------------------------------------------- /docs/c.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/c.sam.md -------------------------------------------------------------------------------- /docs/catchbyfleetplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/catchbyfleetplot.md -------------------------------------------------------------------------------- /docs/catchbyfleettable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/catchbyfleettable.md -------------------------------------------------------------------------------- /docs/catchplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/catchplot.md -------------------------------------------------------------------------------- /docs/catchtable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/catchtable.md -------------------------------------------------------------------------------- /docs/caytable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/caytable.md -------------------------------------------------------------------------------- /docs/clean.void.catches.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/clean.void.catches.md -------------------------------------------------------------------------------- /docs/coef.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/coef.sam.md -------------------------------------------------------------------------------- /docs/componentplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/componentplot.md -------------------------------------------------------------------------------- /docs/corplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/corplot.md -------------------------------------------------------------------------------- /docs/corplotcommon.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/corplotcommon.md -------------------------------------------------------------------------------- /docs/dataplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/dataplot.md -------------------------------------------------------------------------------- /docs/defcon.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/defcon.md -------------------------------------------------------------------------------- /docs/defpar.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/defpar.md -------------------------------------------------------------------------------- /docs/deterministicReferencepoints.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/deterministicReferencepoints.md -------------------------------------------------------------------------------- /docs/deterministicReferencepoints.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/deterministicReferencepoints.sam.md -------------------------------------------------------------------------------- /docs/empirobscorrplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/empirobscorrplot.md -------------------------------------------------------------------------------- /docs/equilibriumbiomassplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/equilibriumbiomassplot.md -------------------------------------------------------------------------------- /docs/equilibriumbiomasstable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/equilibriumbiomasstable.md -------------------------------------------------------------------------------- /docs/faytable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/faytable.md -------------------------------------------------------------------------------- /docs/fbarplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/fbarplot.md -------------------------------------------------------------------------------- /docs/fbartable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/fbartable.md -------------------------------------------------------------------------------- /docs/fitfromweb.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/fitfromweb.md -------------------------------------------------------------------------------- /docs/fitplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/fitplot.md -------------------------------------------------------------------------------- /docs/forecast.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/forecast.md -------------------------------------------------------------------------------- /docs/forecastMSY.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/forecastMSY.md -------------------------------------------------------------------------------- /docs/fselectivityplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/fselectivityplot.md -------------------------------------------------------------------------------- /docs/generationlengthplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/generationlengthplot.md -------------------------------------------------------------------------------- /docs/generationlengthtable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/generationlengthtable.md -------------------------------------------------------------------------------- /docs/getAllDerivedValues.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/getAllDerivedValues.md -------------------------------------------------------------------------------- /docs/getFleet.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/getFleet.md -------------------------------------------------------------------------------- /docs/getLowerBounds.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/getLowerBounds.md -------------------------------------------------------------------------------- /docs/getResidualFleets.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/getResidualFleets.md -------------------------------------------------------------------------------- /docs/getUpperBounds.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/getUpperBounds.md -------------------------------------------------------------------------------- /docs/grad.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/grad.md -------------------------------------------------------------------------------- /docs/hcr.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/hcr.md -------------------------------------------------------------------------------- /docs/ibc.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/ibc.md -------------------------------------------------------------------------------- /docs/icesAdviceRule.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/icesAdviceRule.md -------------------------------------------------------------------------------- /docs/iibc.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/iibc.md -------------------------------------------------------------------------------- /docs/index.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/index.md -------------------------------------------------------------------------------- /docs/is.whole.positive.number.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/is.whole.positive.number.md -------------------------------------------------------------------------------- /docs/jacobian.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/jacobian.md -------------------------------------------------------------------------------- /docs/jit.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/jit.md -------------------------------------------------------------------------------- /docs/leaveout.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/leaveout.md -------------------------------------------------------------------------------- /docs/lifeexpectancyplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/lifeexpectancyplot.md -------------------------------------------------------------------------------- /docs/lifeexpectancytable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/lifeexpectancytable.md -------------------------------------------------------------------------------- /docs/loadConf.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/loadConf.md -------------------------------------------------------------------------------- /docs/logLik.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/logLik.sam.md -------------------------------------------------------------------------------- /docs/modelDescription.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/modelDescription.md -------------------------------------------------------------------------------- /docs/modelVersionInfo.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/modelVersionInfo.md -------------------------------------------------------------------------------- /docs/modelforecast.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/modelforecast.md -------------------------------------------------------------------------------- /docs/modeltable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/modeltable.md -------------------------------------------------------------------------------- /docs/mohn.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/mohn.md -------------------------------------------------------------------------------- /docs/nobs.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/nobs.sam.md -------------------------------------------------------------------------------- /docs/nscodConf.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/nscodConf.md -------------------------------------------------------------------------------- /docs/nscodData.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/nscodData.md -------------------------------------------------------------------------------- /docs/nscodParameters.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/nscodParameters.md -------------------------------------------------------------------------------- /docs/ntable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/ntable.md -------------------------------------------------------------------------------- /docs/obscorrplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/obscorrplot.md -------------------------------------------------------------------------------- /docs/obscov.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/obscov.md -------------------------------------------------------------------------------- /docs/parplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/parplot.md -------------------------------------------------------------------------------- /docs/partable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/partable.md -------------------------------------------------------------------------------- /docs/plot.hcr.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/plot.hcr.md -------------------------------------------------------------------------------- /docs/plot.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/plot.sam.md -------------------------------------------------------------------------------- /docs/plot.samforecast.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/plot.samforecast.md -------------------------------------------------------------------------------- /docs/plot.samres.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/plot.samres.md -------------------------------------------------------------------------------- /docs/plot.samset.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/plot.samset.md -------------------------------------------------------------------------------- /docs/plot.samypr.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/plot.samypr.md -------------------------------------------------------------------------------- /docs/plotby.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/plotby.md -------------------------------------------------------------------------------- /docs/plotit.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/plotit.md -------------------------------------------------------------------------------- /docs/print.hcr.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/print.hcr.md -------------------------------------------------------------------------------- /docs/print.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/print.sam.md -------------------------------------------------------------------------------- /docs/print.sam_referencepoints.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/print.sam_referencepoints.md -------------------------------------------------------------------------------- /docs/print.samcoef.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/print.samcoef.md -------------------------------------------------------------------------------- /docs/print.samforecast.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/print.samforecast.md -------------------------------------------------------------------------------- /docs/print.samres.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/print.samres.md -------------------------------------------------------------------------------- /docs/print.samset.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/print.samset.md -------------------------------------------------------------------------------- /docs/print.samypr.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/print.samypr.md -------------------------------------------------------------------------------- /docs/procres.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/procres.md -------------------------------------------------------------------------------- /docs/qtable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/qtable.md -------------------------------------------------------------------------------- /docs/qtable.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/qtable.sam.md -------------------------------------------------------------------------------- /docs/qtableplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/qtableplot.md -------------------------------------------------------------------------------- /docs/read.data.files.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/read.data.files.md -------------------------------------------------------------------------------- /docs/read.ices.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/read.ices.md -------------------------------------------------------------------------------- /docs/read.surveys.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/read.surveys.md -------------------------------------------------------------------------------- /docs/read.table.nowarn.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/read.table.nowarn.md -------------------------------------------------------------------------------- /docs/recplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/recplot.md -------------------------------------------------------------------------------- /docs/rectable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/rectable.md -------------------------------------------------------------------------------- /docs/reduce.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/reduce.md -------------------------------------------------------------------------------- /docs/referencepoints.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/referencepoints.md -------------------------------------------------------------------------------- /docs/refit.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/refit.md -------------------------------------------------------------------------------- /docs/residuals.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/residuals.sam.md -------------------------------------------------------------------------------- /docs/retro.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/retro.md -------------------------------------------------------------------------------- /docs/rmaxplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/rmaxplot.md -------------------------------------------------------------------------------- /docs/rmaxtable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/rmaxtable.md -------------------------------------------------------------------------------- /docs/rmvnorm.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/rmvnorm.md -------------------------------------------------------------------------------- /docs/runwithout.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/runwithout.md -------------------------------------------------------------------------------- /docs/sam.fit.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/sam.fit.md -------------------------------------------------------------------------------- /docs/saveConf.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/saveConf.md -------------------------------------------------------------------------------- /docs/sdplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/sdplot.md -------------------------------------------------------------------------------- /docs/setS.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/setS.md -------------------------------------------------------------------------------- /docs/setSeq.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/setSeq.md -------------------------------------------------------------------------------- /docs/setup.sam.data.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/setup.sam.data.md -------------------------------------------------------------------------------- /docs/simstudy.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/simstudy.md -------------------------------------------------------------------------------- /docs/simulate.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/simulate.sam.md -------------------------------------------------------------------------------- /docs/sprplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/sprplot.md -------------------------------------------------------------------------------- /docs/sprtable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/sprtable.md -------------------------------------------------------------------------------- /docs/srplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/srplot.md -------------------------------------------------------------------------------- /docs/ssbplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/ssbplot.md -------------------------------------------------------------------------------- /docs/ssbtable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/ssbtable.md -------------------------------------------------------------------------------- /docs/stochasticReferencepoints.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/stochasticReferencepoints.md -------------------------------------------------------------------------------- /docs/stockassessment-deprecated.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/stockassessment-deprecated.md -------------------------------------------------------------------------------- /docs/summary.sam.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/summary.sam.md -------------------------------------------------------------------------------- /docs/tableit.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/tableit.md -------------------------------------------------------------------------------- /docs/tsbplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/tsbplot.md -------------------------------------------------------------------------------- /docs/tsbtable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/tsbtable.md -------------------------------------------------------------------------------- /docs/write.data.files.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/write.data.files.md -------------------------------------------------------------------------------- /docs/write.ices.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/write.ices.md -------------------------------------------------------------------------------- /docs/write.surveys.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/write.surveys.md -------------------------------------------------------------------------------- /docs/yearslostplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/yearslostplot.md -------------------------------------------------------------------------------- /docs/yearslosttable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/yearslosttable.md -------------------------------------------------------------------------------- /docs/ypr.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/ypr.md -------------------------------------------------------------------------------- /docs/yprplot.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/yprplot.md -------------------------------------------------------------------------------- /docs/yprtable.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/docs/yprtable.md -------------------------------------------------------------------------------- /figs/catch.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/figs/catch.png -------------------------------------------------------------------------------- /figs/fbar.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/figs/fbar.png -------------------------------------------------------------------------------- /figs/fig.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/figs/fig.R -------------------------------------------------------------------------------- /figs/lo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/figs/lo.png -------------------------------------------------------------------------------- /figs/rec.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/figs/rec.png -------------------------------------------------------------------------------- /figs/res.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/figs/res.png -------------------------------------------------------------------------------- /figs/resp.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/figs/resp.png -------------------------------------------------------------------------------- /figs/retro.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/figs/retro.png -------------------------------------------------------------------------------- /figs/ssb.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/figs/ssb.png -------------------------------------------------------------------------------- /old/bluewhiting/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/Makefile -------------------------------------------------------------------------------- /old/bluewhiting/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/cn.dat -------------------------------------------------------------------------------- /old/bluewhiting/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/cw.dat -------------------------------------------------------------------------------- /old/bluewhiting/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/dw.dat -------------------------------------------------------------------------------- /old/bluewhiting/la.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/la.dat -------------------------------------------------------------------------------- /old/bluewhiting/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/lf.dat -------------------------------------------------------------------------------- /old/bluewhiting/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/lw.dat -------------------------------------------------------------------------------- /old/bluewhiting/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/mo.dat -------------------------------------------------------------------------------- /old/bluewhiting/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/nm.dat -------------------------------------------------------------------------------- /old/bluewhiting/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/pf.dat -------------------------------------------------------------------------------- /old/bluewhiting/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/pm.dat -------------------------------------------------------------------------------- /old/bluewhiting/res.EXP: -------------------------------------------------------------------------------- 1 | 377.8696 2 | -------------------------------------------------------------------------------- /old/bluewhiting/res.out: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /old/bluewhiting/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/script.R -------------------------------------------------------------------------------- /old/bluewhiting/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/survey.dat -------------------------------------------------------------------------------- /old/bluewhiting/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/old/bluewhiting/sw.dat -------------------------------------------------------------------------------- /stockassessment/DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/DESCRIPTION -------------------------------------------------------------------------------- /stockassessment/NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/NAMESPACE -------------------------------------------------------------------------------- /stockassessment/NEWS: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/NEWS -------------------------------------------------------------------------------- /stockassessment/R/addRecruitmentCurve.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/addRecruitmentCurve.R -------------------------------------------------------------------------------- /stockassessment/R/conf.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/conf.R -------------------------------------------------------------------------------- /stockassessment/R/deterministic_referencepoints.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/deterministic_referencepoints.R -------------------------------------------------------------------------------- /stockassessment/R/forecast.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/forecast.R -------------------------------------------------------------------------------- /stockassessment/R/hcr.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/hcr.R -------------------------------------------------------------------------------- /stockassessment/R/init.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/init.R -------------------------------------------------------------------------------- /stockassessment/R/methods.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/methods.R -------------------------------------------------------------------------------- /stockassessment/R/modelforecast.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/modelforecast.R -------------------------------------------------------------------------------- /stockassessment/R/plot.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/plot.R -------------------------------------------------------------------------------- /stockassessment/R/reading.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/reading.R -------------------------------------------------------------------------------- /stockassessment/R/referencepoints.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/referencepoints.R -------------------------------------------------------------------------------- /stockassessment/R/relist.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/relist.R -------------------------------------------------------------------------------- /stockassessment/R/retro.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/retro.R -------------------------------------------------------------------------------- /stockassessment/R/run.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/run.R -------------------------------------------------------------------------------- /stockassessment/R/sim.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/sim.R -------------------------------------------------------------------------------- /stockassessment/R/splineKnots.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/splineKnots.R -------------------------------------------------------------------------------- /stockassessment/R/stochastic_referencepoints.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/stochastic_referencepoints.R -------------------------------------------------------------------------------- /stockassessment/R/tables.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/tables.R -------------------------------------------------------------------------------- /stockassessment/R/text.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/text.R -------------------------------------------------------------------------------- /stockassessment/R/writing.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/R/writing.R -------------------------------------------------------------------------------- /stockassessment/cleanup: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/cleanup -------------------------------------------------------------------------------- /stockassessment/configure: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/configure -------------------------------------------------------------------------------- /stockassessment/configure.ac: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/configure.ac -------------------------------------------------------------------------------- /stockassessment/data/nscodConf.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/data/nscodConf.RData -------------------------------------------------------------------------------- /stockassessment/data/nscodData.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/data/nscodData.RData -------------------------------------------------------------------------------- /stockassessment/data/nscodParameters.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/data/nscodParameters.RData -------------------------------------------------------------------------------- /stockassessment/inst/CITATION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/CITATION -------------------------------------------------------------------------------- /stockassessment/inst/doc/simulate.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/doc/simulate.pdf -------------------------------------------------------------------------------- /stockassessment/inst/doc/stockassessment.pdf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/doc/stockassessment.pdf -------------------------------------------------------------------------------- /stockassessment/inst/flr_convenience.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/flr_convenience.R -------------------------------------------------------------------------------- /stockassessment/inst/ices_values.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/ices_values.R -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/biopar.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/biopar.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/convenience.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/convenience.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/define.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/define.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/derived.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/derived.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/equilibrium.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/equilibrium.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/f.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/f.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/forecast.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/forecast.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/forecastsim.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/forecastsim.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/incidence.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/incidence.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/logspace.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/logspace.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/mvmix.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/mvmix.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/n.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/n.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/newton.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/newton.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/obs.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/obs.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/p.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/p.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/pnorm.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/pnorm.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/predn.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/predn.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/predobs.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/predobs.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/recruitment.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/recruitment.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/referencepoints.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/referencepoints.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/refpointset.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/refpointset.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/reproductive.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/reproductive.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/spline.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/spline.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/splinePenalty.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/splinePenalty.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/survival.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/survival.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM/toF.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM/toF.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM_API.hpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM_API.hpp -------------------------------------------------------------------------------- /stockassessment/inst/include/SAM_preprocessor.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/include/SAM_preprocessor.h -------------------------------------------------------------------------------- /stockassessment/inst/parse_src.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/inst/parse_src.R -------------------------------------------------------------------------------- /stockassessment/man/addRecruitmentCurve.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/addRecruitmentCurve.Rd -------------------------------------------------------------------------------- /stockassessment/man/addforecast.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/addforecast.Rd -------------------------------------------------------------------------------- /stockassessment/man/b0plot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/b0plot.Rd -------------------------------------------------------------------------------- /stockassessment/man/b0table.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/b0table.Rd -------------------------------------------------------------------------------- /stockassessment/man/bc.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/bc.Rd -------------------------------------------------------------------------------- /stockassessment/man/c.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/c.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/catchbyfleetplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/catchbyfleetplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/catchbyfleettable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/catchbyfleettable.Rd -------------------------------------------------------------------------------- /stockassessment/man/catchplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/catchplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/catchtable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/catchtable.Rd -------------------------------------------------------------------------------- /stockassessment/man/caytable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/caytable.Rd -------------------------------------------------------------------------------- /stockassessment/man/clean.void.catches.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/clean.void.catches.Rd -------------------------------------------------------------------------------- /stockassessment/man/coef.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/coef.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/componentplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/componentplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/corplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/corplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/corplotcommon.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/corplotcommon.Rd -------------------------------------------------------------------------------- /stockassessment/man/dataplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/dataplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/defcon.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/defcon.Rd -------------------------------------------------------------------------------- /stockassessment/man/defpar.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/defpar.Rd -------------------------------------------------------------------------------- /stockassessment/man/deterministicReferencepoints.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/deterministicReferencepoints.Rd -------------------------------------------------------------------------------- /stockassessment/man/deterministicReferencepoints.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/deterministicReferencepoints.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/empirobscorrplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/empirobscorrplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/equilibriumbiomassplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/equilibriumbiomassplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/equilibriumbiomasstable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/equilibriumbiomasstable.Rd -------------------------------------------------------------------------------- /stockassessment/man/faytable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/faytable.Rd -------------------------------------------------------------------------------- /stockassessment/man/fbarplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/fbarplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/fbartable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/fbartable.Rd -------------------------------------------------------------------------------- /stockassessment/man/fitfromweb.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/fitfromweb.Rd -------------------------------------------------------------------------------- /stockassessment/man/fitplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/fitplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/forecast.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/forecast.Rd -------------------------------------------------------------------------------- /stockassessment/man/forecastMSY.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/forecastMSY.Rd -------------------------------------------------------------------------------- /stockassessment/man/fselectivityplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/fselectivityplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/generationlengthplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/generationlengthplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/generationlengthtable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/generationlengthtable.Rd -------------------------------------------------------------------------------- /stockassessment/man/getAllDerivedValues.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/getAllDerivedValues.Rd -------------------------------------------------------------------------------- /stockassessment/man/getFleet.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/getFleet.Rd -------------------------------------------------------------------------------- /stockassessment/man/getLowerBounds.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/getLowerBounds.Rd -------------------------------------------------------------------------------- /stockassessment/man/getResidualFleets.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/getResidualFleets.Rd -------------------------------------------------------------------------------- /stockassessment/man/getUpperBounds.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/getUpperBounds.Rd -------------------------------------------------------------------------------- /stockassessment/man/grad.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/grad.Rd -------------------------------------------------------------------------------- /stockassessment/man/hcr.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/hcr.Rd -------------------------------------------------------------------------------- /stockassessment/man/ibc.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/ibc.Rd -------------------------------------------------------------------------------- /stockassessment/man/icesAdviceRule.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/icesAdviceRule.Rd -------------------------------------------------------------------------------- /stockassessment/man/iibc.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/iibc.Rd -------------------------------------------------------------------------------- /stockassessment/man/is.whole.positive.number.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/is.whole.positive.number.Rd -------------------------------------------------------------------------------- /stockassessment/man/jacobian.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/jacobian.Rd -------------------------------------------------------------------------------- /stockassessment/man/jit.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/jit.Rd -------------------------------------------------------------------------------- /stockassessment/man/leaveout.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/leaveout.Rd -------------------------------------------------------------------------------- /stockassessment/man/lifeexpectancyplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/lifeexpectancyplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/lifeexpectancytable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/lifeexpectancytable.Rd -------------------------------------------------------------------------------- /stockassessment/man/loadConf.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/loadConf.Rd -------------------------------------------------------------------------------- /stockassessment/man/logLik.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/logLik.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/modelDescription.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/modelDescription.Rd -------------------------------------------------------------------------------- /stockassessment/man/modelVersionInfo.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/modelVersionInfo.Rd -------------------------------------------------------------------------------- /stockassessment/man/modelforecast.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/modelforecast.Rd -------------------------------------------------------------------------------- /stockassessment/man/modeltable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/modeltable.Rd -------------------------------------------------------------------------------- /stockassessment/man/mohn.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/mohn.Rd -------------------------------------------------------------------------------- /stockassessment/man/nobs.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/nobs.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/nscodConf.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/nscodConf.Rd -------------------------------------------------------------------------------- /stockassessment/man/nscodData.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/nscodData.Rd -------------------------------------------------------------------------------- /stockassessment/man/nscodParameters.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/nscodParameters.Rd -------------------------------------------------------------------------------- /stockassessment/man/ntable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/ntable.Rd -------------------------------------------------------------------------------- /stockassessment/man/obscorrplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/obscorrplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/obscov.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/obscov.Rd -------------------------------------------------------------------------------- /stockassessment/man/parplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/parplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/partable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/partable.Rd -------------------------------------------------------------------------------- /stockassessment/man/plot.hcr.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/plot.hcr.Rd -------------------------------------------------------------------------------- /stockassessment/man/plot.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/plot.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/plot.samforecast.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/plot.samforecast.Rd -------------------------------------------------------------------------------- /stockassessment/man/plot.samres.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/plot.samres.Rd -------------------------------------------------------------------------------- /stockassessment/man/plot.samset.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/plot.samset.Rd -------------------------------------------------------------------------------- /stockassessment/man/plot.samypr.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/plot.samypr.Rd -------------------------------------------------------------------------------- /stockassessment/man/plotby.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/plotby.Rd -------------------------------------------------------------------------------- /stockassessment/man/plotit.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/plotit.Rd -------------------------------------------------------------------------------- /stockassessment/man/predstdplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/predstdplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/print.hcr.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/print.hcr.Rd -------------------------------------------------------------------------------- /stockassessment/man/print.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/print.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/print.sam_referencepoints.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/print.sam_referencepoints.Rd -------------------------------------------------------------------------------- /stockassessment/man/print.samcoef.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/print.samcoef.Rd -------------------------------------------------------------------------------- /stockassessment/man/print.samforecast.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/print.samforecast.Rd -------------------------------------------------------------------------------- /stockassessment/man/print.samres.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/print.samres.Rd -------------------------------------------------------------------------------- /stockassessment/man/print.samset.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/print.samset.Rd -------------------------------------------------------------------------------- /stockassessment/man/print.samypr.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/print.samypr.Rd -------------------------------------------------------------------------------- /stockassessment/man/procres.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/procres.Rd -------------------------------------------------------------------------------- /stockassessment/man/qtable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/qtable.Rd -------------------------------------------------------------------------------- /stockassessment/man/qtable.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/qtable.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/qtableplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/qtableplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/read.data.files.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/read.data.files.Rd -------------------------------------------------------------------------------- /stockassessment/man/read.ices.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/read.ices.Rd -------------------------------------------------------------------------------- /stockassessment/man/read.surveys.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/read.surveys.Rd -------------------------------------------------------------------------------- /stockassessment/man/read.table.nowarn.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/read.table.nowarn.Rd -------------------------------------------------------------------------------- /stockassessment/man/recplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/recplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/rectable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/rectable.Rd -------------------------------------------------------------------------------- /stockassessment/man/reduce.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/reduce.Rd -------------------------------------------------------------------------------- /stockassessment/man/referencepoints.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/referencepoints.Rd -------------------------------------------------------------------------------- /stockassessment/man/refit.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/refit.Rd -------------------------------------------------------------------------------- /stockassessment/man/residplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/residplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/residuals.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/residuals.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/retro.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/retro.Rd -------------------------------------------------------------------------------- /stockassessment/man/rmaxplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/rmaxplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/rmaxtable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/rmaxtable.Rd -------------------------------------------------------------------------------- /stockassessment/man/rmvnorm.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/rmvnorm.Rd -------------------------------------------------------------------------------- /stockassessment/man/runwithout.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/runwithout.Rd -------------------------------------------------------------------------------- /stockassessment/man/sam.fit.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/sam.fit.Rd -------------------------------------------------------------------------------- /stockassessment/man/saveConf.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/saveConf.Rd -------------------------------------------------------------------------------- /stockassessment/man/sdplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/sdplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/setS.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/setS.Rd -------------------------------------------------------------------------------- /stockassessment/man/setSeq.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/setSeq.Rd -------------------------------------------------------------------------------- /stockassessment/man/setup.sam.data.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/setup.sam.data.Rd -------------------------------------------------------------------------------- /stockassessment/man/simstudy.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/simstudy.Rd -------------------------------------------------------------------------------- /stockassessment/man/simulate.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/simulate.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/sprplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/sprplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/sprtable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/sprtable.Rd -------------------------------------------------------------------------------- /stockassessment/man/srplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/srplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/ssbplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/ssbplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/ssbtable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/ssbtable.Rd -------------------------------------------------------------------------------- /stockassessment/man/stochasticReferencepoints.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/stochasticReferencepoints.Rd -------------------------------------------------------------------------------- /stockassessment/man/stockassessment-deprecated.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/stockassessment-deprecated.Rd -------------------------------------------------------------------------------- /stockassessment/man/summary.sam.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/summary.sam.Rd -------------------------------------------------------------------------------- /stockassessment/man/tableit.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/tableit.Rd -------------------------------------------------------------------------------- /stockassessment/man/tsbplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/tsbplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/tsbtable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/tsbtable.Rd -------------------------------------------------------------------------------- /stockassessment/man/write.data.files.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/write.data.files.Rd -------------------------------------------------------------------------------- /stockassessment/man/write.ices.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/write.ices.Rd -------------------------------------------------------------------------------- /stockassessment/man/write.surveys.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/write.surveys.Rd -------------------------------------------------------------------------------- /stockassessment/man/yearslostplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/yearslostplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/yearslosttable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/yearslosttable.Rd -------------------------------------------------------------------------------- /stockassessment/man/ypr.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/ypr.Rd -------------------------------------------------------------------------------- /stockassessment/man/yprplot.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/yprplot.Rd -------------------------------------------------------------------------------- /stockassessment/man/yprtable.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/man/yprtable.Rd -------------------------------------------------------------------------------- /stockassessment/src/Makevars.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/src/Makevars.in -------------------------------------------------------------------------------- /stockassessment/src/Makevars.win: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/src/Makevars.win -------------------------------------------------------------------------------- /stockassessment/src/TMB.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/src/TMB.cpp -------------------------------------------------------------------------------- /stockassessment/src/TMB.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/src/TMB.h -------------------------------------------------------------------------------- /stockassessment/src/jacobian.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/src/jacobian.cpp -------------------------------------------------------------------------------- /stockassessment/src/main.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/src/main.cpp -------------------------------------------------------------------------------- /stockassessment/src/perRecruit.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/src/perRecruit.cpp -------------------------------------------------------------------------------- /stockassessment/src/spline.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/src/spline.cpp -------------------------------------------------------------------------------- /stockassessment/src/stockassessment.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/src/stockassessment.cpp -------------------------------------------------------------------------------- /stockassessment/tests/AAAtest-all.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/AAAtest-all.R -------------------------------------------------------------------------------- /stockassessment/tests/compare.fits.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/compare.fits.R -------------------------------------------------------------------------------- /stockassessment/tests/mack/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/cn.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/cw.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/dw.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/fit.expected.Rdata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/fit.expected.Rdata -------------------------------------------------------------------------------- /stockassessment/tests/mack/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/lf.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/lw.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/mo.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/nm.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/pf.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/pm.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/script.R -------------------------------------------------------------------------------- /stockassessment/tests/mack/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/survey.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/sw.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/tag.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/tag.dat -------------------------------------------------------------------------------- /stockassessment/tests/mack/tag2.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/mack/tag2.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/cn.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/cw.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/dw.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/fit.expected.Rdata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/fit.expected.Rdata -------------------------------------------------------------------------------- /stockassessment/tests/nscod/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/lf.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/lw.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/mo.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/mo_raw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/mo_raw.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/nm.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/pf.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/pm.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/script.R -------------------------------------------------------------------------------- /stockassessment/tests/nscod/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/survey.dat -------------------------------------------------------------------------------- /stockassessment/tests/nscod/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nscod/sw.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/cn.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/cw.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/dw.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/fit.expected.Rdata: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/fit.expected.Rdata -------------------------------------------------------------------------------- /stockassessment/tests/nsher/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/lf.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/lw.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/mo.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/nm.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/pf.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/pm.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/script.R -------------------------------------------------------------------------------- /stockassessment/tests/nsher/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/survey.dat -------------------------------------------------------------------------------- /stockassessment/tests/nsher/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/nsher/sw.dat -------------------------------------------------------------------------------- /stockassessment/tests/run.compare.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/run.compare.R -------------------------------------------------------------------------------- /stockassessment/tests/testthat/test-mack.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/testthat/test-mack.R -------------------------------------------------------------------------------- /stockassessment/tests/testthat/test-nscod.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/testthat/test-nscod.R -------------------------------------------------------------------------------- /stockassessment/tests/testthat/test-nsher.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/stockassessment/tests/testthat/test-nsher.R -------------------------------------------------------------------------------- /testmore/API/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/API/res.EXP -------------------------------------------------------------------------------- /testmore/API/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/API/script.R -------------------------------------------------------------------------------- /testmore/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/Makefile -------------------------------------------------------------------------------- /testmore/NSAS/caa_waa.r: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/caa_waa.r -------------------------------------------------------------------------------- /testmore/NSAS/fakesplit.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/fakesplit.RData -------------------------------------------------------------------------------- /testmore/NSAS/ignore: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /testmore/NSAS/nosplit.RData: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/nosplit.RData -------------------------------------------------------------------------------- /testmore/NSAS/old/CANUM.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/old/CANUM.txt -------------------------------------------------------------------------------- /testmore/NSAS/old/FLEET.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/old/FLEET.txt -------------------------------------------------------------------------------- /testmore/NSAS/old/FPROP.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/old/FPROP.txt -------------------------------------------------------------------------------- /testmore/NSAS/old/MATPROP.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/old/MATPROP.txt -------------------------------------------------------------------------------- /testmore/NSAS/old/MPROP.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/old/MPROP.txt -------------------------------------------------------------------------------- /testmore/NSAS/old/NATMOR.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/old/NATMOR.txt -------------------------------------------------------------------------------- /testmore/NSAS/old/WECA.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/old/WECA.txt -------------------------------------------------------------------------------- /testmore/NSAS/old/WEST.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/old/WEST.txt -------------------------------------------------------------------------------- /testmore/NSAS/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/script.R -------------------------------------------------------------------------------- /testmore/NSAS/split/cn_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/split/cn_A.dat -------------------------------------------------------------------------------- /testmore/NSAS/split/cn_B.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/split/cn_B.dat -------------------------------------------------------------------------------- /testmore/NSAS/split/cn_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/split/cn_C.dat -------------------------------------------------------------------------------- /testmore/NSAS/split/cn_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/split/cn_D.dat -------------------------------------------------------------------------------- /testmore/NSAS/split/cw_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/split/cw_A.dat -------------------------------------------------------------------------------- /testmore/NSAS/split/cw_B.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/split/cw_B.dat -------------------------------------------------------------------------------- /testmore/NSAS/split/cw_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/split/cw_C.dat -------------------------------------------------------------------------------- /testmore/NSAS/split/cw_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS/split/cw_D.dat -------------------------------------------------------------------------------- /testmore/NSAS_comps/data/CANUM.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/data/CANUM.txt -------------------------------------------------------------------------------- /testmore/NSAS_comps/data/FLEET.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/data/FLEET.txt -------------------------------------------------------------------------------- /testmore/NSAS_comps/data/FPROP.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/data/FPROP.txt -------------------------------------------------------------------------------- /testmore/NSAS_comps/data/MATPROP.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/data/MATPROP.txt -------------------------------------------------------------------------------- /testmore/NSAS_comps/data/MPROP.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/data/MPROP.txt -------------------------------------------------------------------------------- /testmore/NSAS_comps/data/NATMOR.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/data/NATMOR.txt -------------------------------------------------------------------------------- /testmore/NSAS_comps/data/WECA.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/data/WECA.txt -------------------------------------------------------------------------------- /testmore/NSAS_comps/data/WEST.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/data/WEST.txt -------------------------------------------------------------------------------- /testmore/NSAS_comps/data/lai.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/data/lai.txt -------------------------------------------------------------------------------- /testmore/NSAS_comps/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/res.EXP -------------------------------------------------------------------------------- /testmore/NSAS_comps/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/NSAS_comps/script.R -------------------------------------------------------------------------------- /testmore/WBSS/old/CATON.LOW: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/old/CATON.LOW -------------------------------------------------------------------------------- /testmore/WBSS/old/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/old/cn.dat -------------------------------------------------------------------------------- /testmore/WBSS/old/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/old/cw.dat -------------------------------------------------------------------------------- /testmore/WBSS/old/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/old/mo.dat -------------------------------------------------------------------------------- /testmore/WBSS/old/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/old/nm.dat -------------------------------------------------------------------------------- /testmore/WBSS/old/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/old/pf.dat -------------------------------------------------------------------------------- /testmore/WBSS/old/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/old/pm.dat -------------------------------------------------------------------------------- /testmore/WBSS/old/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/old/survey.dat -------------------------------------------------------------------------------- /testmore/WBSS/old/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/old/sw.dat -------------------------------------------------------------------------------- /testmore/WBSS/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/res.EXP -------------------------------------------------------------------------------- /testmore/WBSS/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/script.R -------------------------------------------------------------------------------- /testmore/WBSS/split/cn_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/split/cn_A.dat -------------------------------------------------------------------------------- /testmore/WBSS/split/cn_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/split/cn_C.dat -------------------------------------------------------------------------------- /testmore/WBSS/split/cn_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/split/cn_D.dat -------------------------------------------------------------------------------- /testmore/WBSS/split/cn_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/split/cn_F.dat -------------------------------------------------------------------------------- /testmore/WBSS/split/cn_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/split/cn_all.dat -------------------------------------------------------------------------------- /testmore/WBSS/split/cw_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/split/cw_A.dat -------------------------------------------------------------------------------- /testmore/WBSS/split/cw_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/split/cw_C.dat -------------------------------------------------------------------------------- /testmore/WBSS/split/cw_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/split/cw_D.dat -------------------------------------------------------------------------------- /testmore/WBSS/split/cw_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/split/cw_F.dat -------------------------------------------------------------------------------- /testmore/WBSS/split/cw_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS/split/cw_all.dat -------------------------------------------------------------------------------- /testmore/WBSS2/old/CATON.LOW: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/old/CATON.LOW -------------------------------------------------------------------------------- /testmore/WBSS2/old/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/old/cn.dat -------------------------------------------------------------------------------- /testmore/WBSS2/old/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/old/cw.dat -------------------------------------------------------------------------------- /testmore/WBSS2/old/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/old/mo.dat -------------------------------------------------------------------------------- /testmore/WBSS2/old/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/old/nm.dat -------------------------------------------------------------------------------- /testmore/WBSS2/old/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/old/pf.dat -------------------------------------------------------------------------------- /testmore/WBSS2/old/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/old/pm.dat -------------------------------------------------------------------------------- /testmore/WBSS2/old/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/old/survey.dat -------------------------------------------------------------------------------- /testmore/WBSS2/old/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/old/sw.dat -------------------------------------------------------------------------------- /testmore/WBSS2/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/res.EXP -------------------------------------------------------------------------------- /testmore/WBSS2/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/script.R -------------------------------------------------------------------------------- /testmore/WBSS2/split/cn_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/split/cn_A.dat -------------------------------------------------------------------------------- /testmore/WBSS2/split/cn_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/split/cn_C.dat -------------------------------------------------------------------------------- /testmore/WBSS2/split/cn_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/split/cn_D.dat -------------------------------------------------------------------------------- /testmore/WBSS2/split/cn_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/split/cn_F.dat -------------------------------------------------------------------------------- /testmore/WBSS2/split/cn_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/split/cn_all.dat -------------------------------------------------------------------------------- /testmore/WBSS2/split/cw_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/split/cw_A.dat -------------------------------------------------------------------------------- /testmore/WBSS2/split/cw_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/split/cw_C.dat -------------------------------------------------------------------------------- /testmore/WBSS2/split/cw_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/split/cw_D.dat -------------------------------------------------------------------------------- /testmore/WBSS2/split/cw_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/split/cw_F.dat -------------------------------------------------------------------------------- /testmore/WBSS2/split/cw_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS2/split/cw_all.dat -------------------------------------------------------------------------------- /testmore/WBSS3/old/CATON.LOW: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/old/CATON.LOW -------------------------------------------------------------------------------- /testmore/WBSS3/old/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/old/cn.dat -------------------------------------------------------------------------------- /testmore/WBSS3/old/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/old/cw.dat -------------------------------------------------------------------------------- /testmore/WBSS3/old/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/old/mo.dat -------------------------------------------------------------------------------- /testmore/WBSS3/old/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/old/nm.dat -------------------------------------------------------------------------------- /testmore/WBSS3/old/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/old/pf.dat -------------------------------------------------------------------------------- /testmore/WBSS3/old/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/old/pm.dat -------------------------------------------------------------------------------- /testmore/WBSS3/old/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/old/survey.dat -------------------------------------------------------------------------------- /testmore/WBSS3/old/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/old/sw.dat -------------------------------------------------------------------------------- /testmore/WBSS3/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/res.EXP -------------------------------------------------------------------------------- /testmore/WBSS3/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/script.R -------------------------------------------------------------------------------- /testmore/WBSS3/split/cn_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/split/cn_A.dat -------------------------------------------------------------------------------- /testmore/WBSS3/split/cn_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/split/cn_C.dat -------------------------------------------------------------------------------- /testmore/WBSS3/split/cn_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/split/cn_D.dat -------------------------------------------------------------------------------- /testmore/WBSS3/split/cn_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/split/cn_F.dat -------------------------------------------------------------------------------- /testmore/WBSS3/split/cn_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/split/cn_all.dat -------------------------------------------------------------------------------- /testmore/WBSS3/split/cw_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/split/cw_A.dat -------------------------------------------------------------------------------- /testmore/WBSS3/split/cw_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/split/cw_C.dat -------------------------------------------------------------------------------- /testmore/WBSS3/split/cw_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/split/cw_D.dat -------------------------------------------------------------------------------- /testmore/WBSS3/split/cw_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/split/cw_F.dat -------------------------------------------------------------------------------- /testmore/WBSS3/split/cw_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3/split/cw_all.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/ignore: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /testmore/WBSS3a/old/CATON.LOW: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/old/CATON.LOW -------------------------------------------------------------------------------- /testmore/WBSS3a/old/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/old/cn.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/old/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/old/cw.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/old/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/old/mo.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/old/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/old/nm.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/old/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/old/pf.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/old/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/old/pm.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/old/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/old/survey.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/old/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/old/sw.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/res.EXP -------------------------------------------------------------------------------- /testmore/WBSS3a/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/script.R -------------------------------------------------------------------------------- /testmore/WBSS3a/split/cn_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/split/cn_A.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/split/cn_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/split/cn_C.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/split/cn_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/split/cn_D.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/split/cn_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/split/cn_F.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/split/cn_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/split/cn_all.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/split/cw_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/split/cw_A.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/split/cw_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/split/cw_C.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/split/cw_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/split/cw_D.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/split/cw_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/split/cw_F.dat -------------------------------------------------------------------------------- /testmore/WBSS3a/split/cw_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS3a/split/cw_all.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/cn.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/cn_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/cn_A.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/cn_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/cn_C.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/cn_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/cn_D.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/cn_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/cn_F.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/cw.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/cw_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/cw_A.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/cw_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/cw_C.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/cw_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/cw_D.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/cw_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/cw_F.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/dw.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/lf.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/lw.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/mo.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/model.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/model.cfg -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/nm.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/pf.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/pm.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/survey.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/dat/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/dat/sw.dat -------------------------------------------------------------------------------- /testmore/WBSS_sum/res.EXP: -------------------------------------------------------------------------------- 1 | 1314.731 -------------------------------------------------------------------------------- /testmore/WBSS_sum/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/WBSS_sum/script.R -------------------------------------------------------------------------------- /testmore/alnar/res.EXP: -------------------------------------------------------------------------------- 1 | 150.7023 2 | -------------------------------------------------------------------------------- /testmore/alnar/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/alnar/script.R -------------------------------------------------------------------------------- /testmore/alnid/res.EXP: -------------------------------------------------------------------------------- 1 | 154.045 2 | -------------------------------------------------------------------------------- /testmore/alnid/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/alnid/script.R -------------------------------------------------------------------------------- /testmore/alnus/res.EXP: -------------------------------------------------------------------------------- 1 | 150.5619 2 | -------------------------------------------------------------------------------- /testmore/alnus/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/alnus/script.R -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-CANUM-inflated.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-CANUM-inflated.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-CANUM-reported.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-CANUM-reported.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-CATON.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-CATON.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-DISNUM.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-DISNUM.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-DISTON.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-DISTON.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-FPROP.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-FPROP.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-INDEX.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-INDEX.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-LANUM.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-LANUM.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-LATON.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-LATON.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-MATPROP.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-MATPROP.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-MPROP.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-MPROP.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-NATMOR.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-NATMOR.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-WECA.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-WECA.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-WEDIS.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-WEDIS.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-WELAND.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-WELAND.txt -------------------------------------------------------------------------------- /testmore/bfte2014/bfte2014-WEST.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/bfte2014-WEST.txt -------------------------------------------------------------------------------- /testmore/bfte2014/index.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/index.txt -------------------------------------------------------------------------------- /testmore/bfte2014/res.EXP: -------------------------------------------------------------------------------- 1 | 1365.464 2 | -------------------------------------------------------------------------------- /testmore/bfte2014/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/bfte2014/script.R -------------------------------------------------------------------------------- /testmore/codIN3Ben/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/cn.dat -------------------------------------------------------------------------------- /testmore/codIN3Ben/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/cw.dat -------------------------------------------------------------------------------- /testmore/codIN3Ben/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/dw.dat -------------------------------------------------------------------------------- /testmore/codIN3Ben/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/lf.dat -------------------------------------------------------------------------------- /testmore/codIN3Ben/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/lw.dat -------------------------------------------------------------------------------- /testmore/codIN3Ben/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/mo.dat -------------------------------------------------------------------------------- /testmore/codIN3Ben/model.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/model.cfg -------------------------------------------------------------------------------- /testmore/codIN3Ben/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/nm.dat -------------------------------------------------------------------------------- /testmore/codIN3Ben/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/pf.dat -------------------------------------------------------------------------------- /testmore/codIN3Ben/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/pm.dat -------------------------------------------------------------------------------- /testmore/codIN3Ben/res.EXP: -------------------------------------------------------------------------------- 1 | 751.6052 2 | -------------------------------------------------------------------------------- /testmore/codIN3Ben/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/script.R -------------------------------------------------------------------------------- /testmore/codIN3Ben/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/survey.dat -------------------------------------------------------------------------------- /testmore/codIN3Ben/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/codIN3Ben/sw.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/old/CATON.LOW: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/old/CATON.LOW -------------------------------------------------------------------------------- /testmore/forecast_WBSS/old/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/old/cn.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/old/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/old/cw.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/old/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/old/mo.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/old/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/old/nm.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/old/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/old/pf.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/old/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/old/pm.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/old/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/old/survey.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/old/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/old/sw.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/res.EXP -------------------------------------------------------------------------------- /testmore/forecast_WBSS/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/script.R -------------------------------------------------------------------------------- /testmore/forecast_WBSS/split/cn_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/split/cn_A.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/split/cn_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/split/cn_C.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/split/cn_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/split/cn_D.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/split/cn_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/split/cn_F.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/split/cn_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/split/cn_all.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/split/cw_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/split/cw_A.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/split/cw_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/split/cw_C.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/split/cw_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/split/cw_D.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/split/cw_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/split/cw_F.dat -------------------------------------------------------------------------------- /testmore/forecast_WBSS/split/cw_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_WBSS/split/cw_all.dat -------------------------------------------------------------------------------- /testmore/forecast_mack/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_mack/res.EXP -------------------------------------------------------------------------------- /testmore/forecast_mack/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_mack/script.R -------------------------------------------------------------------------------- /testmore/forecast_nscod/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_nscod/res.EXP -------------------------------------------------------------------------------- /testmore/forecast_nscod/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_nscod/script.R -------------------------------------------------------------------------------- /testmore/forecast_nsher/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_nsher/res.EXP -------------------------------------------------------------------------------- /testmore/forecast_nsher/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/forecast_nsher/script.R -------------------------------------------------------------------------------- /testmore/fromSEXP/res.EXP: -------------------------------------------------------------------------------- 1 | OK 2 | OK 3 | -------------------------------------------------------------------------------- /testmore/fromSEXP/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/fromSEXP/script.R -------------------------------------------------------------------------------- /testmore/herringVar/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/cn.dat -------------------------------------------------------------------------------- /testmore/herringVar/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/cw.dat -------------------------------------------------------------------------------- /testmore/herringVar/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/dw.dat -------------------------------------------------------------------------------- /testmore/herringVar/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/lf.dat -------------------------------------------------------------------------------- /testmore/herringVar/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/lw.dat -------------------------------------------------------------------------------- /testmore/herringVar/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/mo.dat -------------------------------------------------------------------------------- /testmore/herringVar/modelConf.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/modelConf.cfg -------------------------------------------------------------------------------- /testmore/herringVar/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/nm.dat -------------------------------------------------------------------------------- /testmore/herringVar/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/pf.dat -------------------------------------------------------------------------------- /testmore/herringVar/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/pm.dat -------------------------------------------------------------------------------- /testmore/herringVar/res.EXP: -------------------------------------------------------------------------------- 1 | 748.8611 -------------------------------------------------------------------------------- /testmore/herringVar/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/script.R -------------------------------------------------------------------------------- /testmore/herringVar/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/survey.dat -------------------------------------------------------------------------------- /testmore/herringVar/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/sw.dat -------------------------------------------------------------------------------- /testmore/herringVar/varCommercial.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/varCommercial.txt -------------------------------------------------------------------------------- /testmore/herringVar/varSurvey1.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/varSurvey1.txt -------------------------------------------------------------------------------- /testmore/herringVar/varSurvey2.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/varSurvey2.txt -------------------------------------------------------------------------------- /testmore/herringVar/varSurvey3.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/herringVar/varSurvey3.txt -------------------------------------------------------------------------------- /testmore/jacobian/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/jacobian/res.EXP -------------------------------------------------------------------------------- /testmore/jacobian/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/jacobian/script.R -------------------------------------------------------------------------------- /testmore/mack/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/cn.dat -------------------------------------------------------------------------------- /testmore/mack/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/cw.dat -------------------------------------------------------------------------------- /testmore/mack/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/dw.dat -------------------------------------------------------------------------------- /testmore/mack/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/lf.dat -------------------------------------------------------------------------------- /testmore/mack/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/lw.dat -------------------------------------------------------------------------------- /testmore/mack/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/mo.dat -------------------------------------------------------------------------------- /testmore/mack/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/nm.dat -------------------------------------------------------------------------------- /testmore/mack/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/pf.dat -------------------------------------------------------------------------------- /testmore/mack/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/pm.dat -------------------------------------------------------------------------------- /testmore/mack/res.EXP: -------------------------------------------------------------------------------- 1 | 2258.379 2 | -------------------------------------------------------------------------------- /testmore/mack/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/script.R -------------------------------------------------------------------------------- /testmore/mack/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/survey.dat -------------------------------------------------------------------------------- /testmore/mack/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/sw.dat -------------------------------------------------------------------------------- /testmore/mack/tag.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/mack/tag.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/cn.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/conf.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/conf.cfg -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/cw.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/dw.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/lf.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/lw.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/mo.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/nm.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/pf.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/pm.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/res.EXP: -------------------------------------------------------------------------------- 1 | 977.5577 2 | -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/script.R -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/survey.dat -------------------------------------------------------------------------------- /testmore/neaHaddockPredVar/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/neaHaddockPredVar/sw.dat -------------------------------------------------------------------------------- /testmore/nscod/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/cn.dat -------------------------------------------------------------------------------- /testmore/nscod/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/cw.dat -------------------------------------------------------------------------------- /testmore/nscod/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/dw.dat -------------------------------------------------------------------------------- /testmore/nscod/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/lf.dat -------------------------------------------------------------------------------- /testmore/nscod/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/lw.dat -------------------------------------------------------------------------------- /testmore/nscod/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/mo.dat -------------------------------------------------------------------------------- /testmore/nscod/mo_raw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/mo_raw.dat -------------------------------------------------------------------------------- /testmore/nscod/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/nm.dat -------------------------------------------------------------------------------- /testmore/nscod/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/pf.dat -------------------------------------------------------------------------------- /testmore/nscod/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/pm.dat -------------------------------------------------------------------------------- /testmore/nscod/res.EXP: -------------------------------------------------------------------------------- 1 | 145.5167 2 | -------------------------------------------------------------------------------- /testmore/nscod/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/script.R -------------------------------------------------------------------------------- /testmore/nscod/scriptcc.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/scriptcc.R -------------------------------------------------------------------------------- /testmore/nscod/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/survey.dat -------------------------------------------------------------------------------- /testmore/nscod/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscod/sw.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/cn.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/cw.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/dw.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/lf.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/lw.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/mo.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/mo_raw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/mo_raw.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/nm.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/pf.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/pm.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/res.EXP: -------------------------------------------------------------------------------- 1 | 220.1333 2 | -------------------------------------------------------------------------------- /testmore/nscodFidx/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/script.R -------------------------------------------------------------------------------- /testmore/nscodFidx/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/survey.dat -------------------------------------------------------------------------------- /testmore/nscodFidx/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodFidx/sw.dat -------------------------------------------------------------------------------- /testmore/nscodSR3/res.EXP: -------------------------------------------------------------------------------- 1 | 148.6596 124.1155 2 | -------------------------------------------------------------------------------- /testmore/nscodSR3/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodSR3/script.R -------------------------------------------------------------------------------- /testmore/nscodXtraSd/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/cn.dat -------------------------------------------------------------------------------- /testmore/nscodXtraSd/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/cw.dat -------------------------------------------------------------------------------- /testmore/nscodXtraSd/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/dw.dat -------------------------------------------------------------------------------- /testmore/nscodXtraSd/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/lf.dat -------------------------------------------------------------------------------- /testmore/nscodXtraSd/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/lw.dat -------------------------------------------------------------------------------- /testmore/nscodXtraSd/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/mo.dat -------------------------------------------------------------------------------- /testmore/nscodXtraSd/model.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/model.cfg -------------------------------------------------------------------------------- /testmore/nscodXtraSd/model2.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/model2.cfg -------------------------------------------------------------------------------- /testmore/nscodXtraSd/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/nm.dat -------------------------------------------------------------------------------- /testmore/nscodXtraSd/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/pf.dat -------------------------------------------------------------------------------- /testmore/nscodXtraSd/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/pm.dat -------------------------------------------------------------------------------- /testmore/nscodXtraSd/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/res.EXP -------------------------------------------------------------------------------- /testmore/nscodXtraSd/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/script.R -------------------------------------------------------------------------------- /testmore/nscodXtraSd/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/survey.dat -------------------------------------------------------------------------------- /testmore/nscodXtraSd/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodXtraSd/sw.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/cn.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/cw.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/dw.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/lf.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/lw.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/mo.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/nm.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/pf.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/pm.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/res.EXP -------------------------------------------------------------------------------- /testmore/nscodbiopro/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/script.R -------------------------------------------------------------------------------- /testmore/nscodbiopro/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/survey.dat -------------------------------------------------------------------------------- /testmore/nscodbiopro/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodbiopro/sw.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/cn.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/cw.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/dw.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/lf.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/lw.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/mo.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/mo_raw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/mo_raw.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/nm.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/pf.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/pm.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/res.EXP -------------------------------------------------------------------------------- /testmore/nscodcovar/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/script.R -------------------------------------------------------------------------------- /testmore/nscodcovar/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/survey.dat -------------------------------------------------------------------------------- /testmore/nscodcovar/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodcovar/sw.dat -------------------------------------------------------------------------------- /testmore/nscodsw/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/cn.dat -------------------------------------------------------------------------------- /testmore/nscodsw/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/cw.dat -------------------------------------------------------------------------------- /testmore/nscodsw/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/dw.dat -------------------------------------------------------------------------------- /testmore/nscodsw/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/lf.dat -------------------------------------------------------------------------------- /testmore/nscodsw/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/lw.dat -------------------------------------------------------------------------------- /testmore/nscodsw/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/mo.dat -------------------------------------------------------------------------------- /testmore/nscodsw/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/nm.dat -------------------------------------------------------------------------------- /testmore/nscodsw/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/pf.dat -------------------------------------------------------------------------------- /testmore/nscodsw/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/pm.dat -------------------------------------------------------------------------------- /testmore/nscodsw/res.EXP: -------------------------------------------------------------------------------- 1 | 38.90681 2 | 60.24043 3 | -------------------------------------------------------------------------------- /testmore/nscodsw/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/script.R -------------------------------------------------------------------------------- /testmore/nscodsw/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/survey.dat -------------------------------------------------------------------------------- /testmore/nscodsw/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodsw/sw.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/cn.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/cw.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/dw.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/lf.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/lw.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/mo.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/nm.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/pf.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/pm.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/res.EXP -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/script.R -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/survey.dat -------------------------------------------------------------------------------- /testmore/nscodswcwmofor/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nscodswcwmofor/sw.dat -------------------------------------------------------------------------------- /testmore/nsher/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/cn.dat -------------------------------------------------------------------------------- /testmore/nsher/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/cw.dat -------------------------------------------------------------------------------- /testmore/nsher/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/dw.dat -------------------------------------------------------------------------------- /testmore/nsher/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/lf.dat -------------------------------------------------------------------------------- /testmore/nsher/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/lw.dat -------------------------------------------------------------------------------- /testmore/nsher/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/mo.dat -------------------------------------------------------------------------------- /testmore/nsher/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/nm.dat -------------------------------------------------------------------------------- /testmore/nsher/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/pf.dat -------------------------------------------------------------------------------- /testmore/nsher/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/pm.dat -------------------------------------------------------------------------------- /testmore/nsher/res.EXP: -------------------------------------------------------------------------------- 1 | 580 2 | -------------------------------------------------------------------------------- /testmore/nsher/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/script.R -------------------------------------------------------------------------------- /testmore/nsher/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/survey.dat -------------------------------------------------------------------------------- /testmore/nsher/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/nsher/sw.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_cn.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_cw.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_dw.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_lf.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_lw.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_mo.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_nm.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_pf.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_pm.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_survey.dat -------------------------------------------------------------------------------- /testmore/parallel/WHITEHAKE_sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/WHITEHAKE_sw.dat -------------------------------------------------------------------------------- /testmore/parallel/model.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/model.cfg -------------------------------------------------------------------------------- /testmore/parallel/res.EXP: -------------------------------------------------------------------------------- 1 | 0 -1.4315 -4 2 | -------------------------------------------------------------------------------- /testmore/parallel/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/parallel/script.R -------------------------------------------------------------------------------- /testmore/plots/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/plots/res.EXP -------------------------------------------------------------------------------- /testmore/plots/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/plots/script.R -------------------------------------------------------------------------------- /testmore/revdep/res.EXP: -------------------------------------------------------------------------------- 1 | OK 2 | -------------------------------------------------------------------------------- /testmore/revdep/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/revdep/script.R -------------------------------------------------------------------------------- /testmore/sepF/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/cn.dat -------------------------------------------------------------------------------- /testmore/sepF/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/cw.dat -------------------------------------------------------------------------------- /testmore/sepF/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/dw.dat -------------------------------------------------------------------------------- /testmore/sepF/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/lf.dat -------------------------------------------------------------------------------- /testmore/sepF/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/lw.dat -------------------------------------------------------------------------------- /testmore/sepF/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/mo.dat -------------------------------------------------------------------------------- /testmore/sepF/modelConf.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/modelConf.cfg -------------------------------------------------------------------------------- /testmore/sepF/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/nm.dat -------------------------------------------------------------------------------- /testmore/sepF/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/pf.dat -------------------------------------------------------------------------------- /testmore/sepF/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/pm.dat -------------------------------------------------------------------------------- /testmore/sepF/res.EXP: -------------------------------------------------------------------------------- 1 | 846.0638 -------------------------------------------------------------------------------- /testmore/sepF/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/script.R -------------------------------------------------------------------------------- /testmore/sepF/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/survey.dat -------------------------------------------------------------------------------- /testmore/sepF/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/sepF/sw.dat -------------------------------------------------------------------------------- /testmore/tables/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/tables/res.EXP -------------------------------------------------------------------------------- /testmore/tables/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/tables/script.R -------------------------------------------------------------------------------- /testmore/write/mf/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cn.dat -------------------------------------------------------------------------------- /testmore/write/mf/cn_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cn_A.dat -------------------------------------------------------------------------------- /testmore/write/mf/cn_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cn_C.dat -------------------------------------------------------------------------------- /testmore/write/mf/cn_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cn_D.dat -------------------------------------------------------------------------------- /testmore/write/mf/cn_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cn_F.dat -------------------------------------------------------------------------------- /testmore/write/mf/cn_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cn_all.dat -------------------------------------------------------------------------------- /testmore/write/mf/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cw.dat -------------------------------------------------------------------------------- /testmore/write/mf/cw_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cw_A.dat -------------------------------------------------------------------------------- /testmore/write/mf/cw_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cw_C.dat -------------------------------------------------------------------------------- /testmore/write/mf/cw_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cw_D.dat -------------------------------------------------------------------------------- /testmore/write/mf/cw_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cw_F.dat -------------------------------------------------------------------------------- /testmore/write/mf/cw_all.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/cw_all.dat -------------------------------------------------------------------------------- /testmore/write/mf/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/mo.dat -------------------------------------------------------------------------------- /testmore/write/mf/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/nm.dat -------------------------------------------------------------------------------- /testmore/write/mf/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/pf.dat -------------------------------------------------------------------------------- /testmore/write/mf/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/pm.dat -------------------------------------------------------------------------------- /testmore/write/mf/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/survey.dat -------------------------------------------------------------------------------- /testmore/write/mf/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mf/sw.dat -------------------------------------------------------------------------------- /testmore/write/mfs/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/cn.dat -------------------------------------------------------------------------------- /testmore/write/mfs/cn_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/cn_A.dat -------------------------------------------------------------------------------- /testmore/write/mfs/cn_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/cn_C.dat -------------------------------------------------------------------------------- /testmore/write/mfs/cn_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/cn_D.dat -------------------------------------------------------------------------------- /testmore/write/mfs/cn_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/cn_F.dat -------------------------------------------------------------------------------- /testmore/write/mfs/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/cw.dat -------------------------------------------------------------------------------- /testmore/write/mfs/cw_A.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/cw_A.dat -------------------------------------------------------------------------------- /testmore/write/mfs/cw_C.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/cw_C.dat -------------------------------------------------------------------------------- /testmore/write/mfs/cw_D.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/cw_D.dat -------------------------------------------------------------------------------- /testmore/write/mfs/cw_F.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/cw_F.dat -------------------------------------------------------------------------------- /testmore/write/mfs/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/dw.dat -------------------------------------------------------------------------------- /testmore/write/mfs/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/lf.dat -------------------------------------------------------------------------------- /testmore/write/mfs/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/lw.dat -------------------------------------------------------------------------------- /testmore/write/mfs/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/mo.dat -------------------------------------------------------------------------------- /testmore/write/mfs/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/nm.dat -------------------------------------------------------------------------------- /testmore/write/mfs/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/pf.dat -------------------------------------------------------------------------------- /testmore/write/mfs/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/pm.dat -------------------------------------------------------------------------------- /testmore/write/mfs/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/survey.dat -------------------------------------------------------------------------------- /testmore/write/mfs/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/mfs/sw.dat -------------------------------------------------------------------------------- /testmore/write/res.EXP: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/res.EXP -------------------------------------------------------------------------------- /testmore/write/script.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/script.R -------------------------------------------------------------------------------- /testmore/write/sf/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/cn.dat -------------------------------------------------------------------------------- /testmore/write/sf/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/cw.dat -------------------------------------------------------------------------------- /testmore/write/sf/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/dw.dat -------------------------------------------------------------------------------- /testmore/write/sf/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/lf.dat -------------------------------------------------------------------------------- /testmore/write/sf/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/lw.dat -------------------------------------------------------------------------------- /testmore/write/sf/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/mo.dat -------------------------------------------------------------------------------- /testmore/write/sf/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/nm.dat -------------------------------------------------------------------------------- /testmore/write/sf/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/pf.dat -------------------------------------------------------------------------------- /testmore/write/sf/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/pm.dat -------------------------------------------------------------------------------- /testmore/write/sf/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/survey.dat -------------------------------------------------------------------------------- /testmore/write/sf/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/sf/sw.dat -------------------------------------------------------------------------------- /testmore/write/test.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/testmore/write/test.dat -------------------------------------------------------------------------------- /vignettes/nsher/cn.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/cn.dat -------------------------------------------------------------------------------- /vignettes/nsher/cw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/cw.dat -------------------------------------------------------------------------------- /vignettes/nsher/dw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/dw.dat -------------------------------------------------------------------------------- /vignettes/nsher/lf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/lf.dat -------------------------------------------------------------------------------- /vignettes/nsher/lw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/lw.dat -------------------------------------------------------------------------------- /vignettes/nsher/mo.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/mo.dat -------------------------------------------------------------------------------- /vignettes/nsher/nm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/nm.dat -------------------------------------------------------------------------------- /vignettes/nsher/pf.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/pf.dat -------------------------------------------------------------------------------- /vignettes/nsher/pm.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/pm.dat -------------------------------------------------------------------------------- /vignettes/nsher/res.EXP: -------------------------------------------------------------------------------- 1 | 580 2 | -------------------------------------------------------------------------------- /vignettes/nsher/res.out: -------------------------------------------------------------------------------- 1 | 580 2 | -------------------------------------------------------------------------------- /vignettes/nsher/survey.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/survey.dat -------------------------------------------------------------------------------- /vignettes/nsher/sw.dat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/nsher/sw.dat -------------------------------------------------------------------------------- /vignettes/simulate.Rmd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/simulate.Rmd -------------------------------------------------------------------------------- /vignettes/stockassessment.Rnw: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/vignettes/stockassessment.Rnw -------------------------------------------------------------------------------- /webteststocklist: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fishfollower/SAM/HEAD/webteststocklist --------------------------------------------------------------------------------