├── .gitignore ├── Dockerfile ├── LICENSE ├── README.md ├── docker └── Dockerfile ├── img └── ironclust_logo.png ├── matlab ├── DataHash.m ├── HDF2Struct.m ├── IronClust manual.pdf ├── NPMK │ ├── @KTFigure │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ └── KTFigure.m.svn-base │ │ └── KTFigure.m │ ├── @KTFigureAxis │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ └── KTFigureAxis.m.svn-base │ │ └── KTFigureAxis.m │ ├── @KTNEVComments │ │ └── KTNEVComments.m │ ├── @KTNSPOnline │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ └── KTNSPOnline.m.svn-base │ │ └── KTNSPOnline.m │ ├── @KTUEAImpedanceFile │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ └── KTUEAImpedanceFile.m.svn-base │ │ └── KTUEAImpedanceFile.m │ ├── @KTUEAMapFile │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ └── KTUEAMapFile.m.svn-base │ │ └── KTUEAMapFile.m │ ├── Dependent Functions │ │ ├── .DS_Store │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ ├── getFile.m.svn-base │ │ │ │ ├── getFolder.m.svn-base │ │ │ │ ├── getSettingFileFullPath.m.svn-base │ │ │ │ ├── parseCommand.m.svn-base │ │ │ │ └── sortNEV.m.svn-base │ │ ├── bnsx.dat │ │ ├── getFile.ini │ │ ├── getFile.m │ │ ├── getFolder.m │ │ ├── getSettingFileFullPath.m │ │ ├── parseCCF.m │ │ ├── parseCommand.m │ │ ├── syncPatternDetectNEV.m │ │ ├── syncPatternDetectNSx.m │ │ └── syncPatternFinderNSx.m │ ├── LoadingEngines │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ └── entries │ │ ├── MClust │ │ │ ├── .DS_Store │ │ │ ├── .svn │ │ │ │ ├── all-wcprops │ │ │ │ ├── entries │ │ │ │ └── text-base │ │ │ │ │ └── BlackrockNEVLoadingEngine.m.svn-base │ │ │ └── BlackrockNEVLoadingEngine.m │ │ └── nsNEVLIbrary 3.05 │ │ │ ├── NevLIb-3-05 │ │ │ ├── Linux │ │ │ │ └── nsNEVLibrary.so │ │ │ ├── Windows │ │ │ │ ├── msvcp71.dll │ │ │ │ ├── msvcr71.dll │ │ │ │ ├── nsNEVLibrary.dll │ │ │ │ └── nsNEVLibrary64.dll │ │ │ └── ns │ │ │ │ ├── ns.c │ │ │ │ └── ns.h │ │ │ ├── Nex Setup.jpg │ │ │ └── OFS Setup.jpg │ ├── NEV Utilities │ │ ├── .DS_Store │ │ ├── findEventTimes.m │ │ ├── mergeNEV.m │ │ ├── openNEVTracking.m │ │ ├── saveNEV.m │ │ ├── saveNEVSpikes.m │ │ ├── saveNEVSubSpikes.m │ │ ├── sortNEV.m │ │ └── splitNEVResets.m │ ├── NPMKverChecker.m │ ├── NSx Utilities │ │ ├── .DS_Store │ │ ├── NSxPowerSpectrum.m │ │ ├── NSxToHL.m │ │ ├── calcTimeDelay.m │ │ ├── combineNSxNEV.m │ │ ├── findSpikes.m │ │ ├── matrixToNSx.m │ │ ├── mergeNSxNEV.m │ │ ├── mergeNSxNEVSeries.m │ │ ├── openNSxHL.m │ │ ├── plotAverageWaveforms.m │ │ ├── removeNSxData.m │ │ ├── rethresholdNSx.m │ │ ├── saveChNSx.m │ │ ├── saveNSx.m │ │ ├── separatePausedNSx.m │ │ ├── separatePausedNSx_old.m │ │ ├── splitNSx.m │ │ └── splitNSxPauses.m │ ├── NTrode Utilities │ │ ├── .DS_Store │ │ ├── ntrodeGroups.m │ │ ├── saveNEVTetrodes.m │ │ ├── splitNEVNTrode.m │ │ └── splitNSxNTrode.m │ ├── Other tools │ │ ├── .svn │ │ │ ├── all-wcprops │ │ │ ├── entries │ │ │ └── text-base │ │ │ │ ├── kshuffle.m.svn-base │ │ │ │ ├── offline2Struct.m.svn-base │ │ │ │ └── playSound.m.svn-base │ │ ├── edgeDetect.m │ │ ├── kshuffle.m │ │ ├── offline2Struct.m │ │ ├── periEventPlot.m │ │ └── playSound.m │ ├── Users Guide.pdf │ ├── Versions.txt │ ├── installNPMK.m │ ├── openCCF.m │ ├── openNEV.m │ ├── openNSx.m │ └── openNSxSync.m ├── accuracy_snr_drift.pdf ├── average_accuracy.txt ├── bar_error.m ├── calc_dist_ccg.m ├── calc_dist_drift.m ├── calc_dist_knn_clu.m ├── cellstr2file.m ├── change_log.txt ├── changelog.md ├── clu_wave_similarity_paged.m ├── clusterVerify.m ├── compile_mex_jisotonic5.m ├── convert_mda.m ├── convert_mda_ui.m ├── correlogram.m ├── cuda_delta_drift.ptx ├── cuda_delta_knn.cu ├── cuda_delta_knn.ptx ├── cuda_knn.cu ├── cuda_knn.ptx ├── cuda_knn_drift.ptx ├── cuda_knn_full.cu ├── cuda_knn_full.ptx ├── cuda_knn_ib.cu ├── cuda_knn_ib.ptx ├── cuda_knn_index.cu ├── cuda_knn_index.ptx ├── cuda_min_drift.ptx ├── dan_english.cfg ├── default.cfg ├── default.prm ├── default1.cfg ├── default2.prm ├── drift2_template.prm ├── drift_template.prm ├── f191016_accuracy_comparison_siprobe.eps ├── f191016_accuracy_comparison_siprobe.fig ├── f191016_accuracy_comparison_siprobe.png ├── f191016_accuracy_comparison_siprobe.svg ├── f191016_accuracy_comparison_tetrode.eps ├── f191016_accuracy_comparison_tetrode.fig ├── f191016_accuracy_comparison_tetrode.png ├── f191016_accuracy_comparison_tetrode.svg ├── f191016_runtime_comparison_channel.eps ├── f191016_runtime_comparison_channel.fig ├── f191016_runtime_comparison_channel.png ├── f191016_runtime_comparison_channel.svg ├── f191016_runtime_comparison_duration.eps ├── f191016_runtime_comparison_duration.fig ├── f191016_runtime_comparison_duration.png ├── f191016_runtime_comparison_duration.svg ├── f191104_burst_ksort2_vs_irc_snr8.fig ├── f191104_burst_ksort2_vs_irc_snr8.pdf ├── f191104_overlap_ksort2_vs_irc_snr4.fig ├── fastplot.m ├── fft_clean.m ├── fft_filter.m ├── fft_filter_transpose.m ├── figures │ ├── F200129_F1score_comparison.fig │ ├── F200129_goodunits_comparison.fig │ ├── F200129_scores_comparison.fig │ ├── F200203_count_f1_comparison.fig │ ├── F200203_f1_snr_comparison.fig │ ├── F200203_scores_comparison.fig │ ├── F200204_count_f1_compare.fig │ ├── F200204_f1_prmset_compare.fig │ ├── F200204_score_snr_compare.fig │ ├── F200204_scores_snr_compare.fig │ ├── accuracy_comparison_english.fig │ ├── comparison_irc2_ms4_ksort2.png │ ├── f191016_accuracy_comparison_siprobe.fig │ ├── f191016_accuracy_comparison_tetrode.fig │ ├── f191016_runtime_comparison_channel.fig │ ├── f191016_runtime_comparison_duration.fig │ ├── f191104_burst_ksort2_vs_irc_snr8.fig │ ├── f191104_overlap_ksort2_vs_irc_snr4.fig │ ├── scaling_diagram_irc2.fig │ └── untitled.fig ├── file2struct.m ├── filtfilt_chain.m ├── findjobj.m ├── fir1_octave.m ├── generate_eMouse_drift.m ├── get0.m ├── get_nan.m ├── img │ ├── benchmark_accuracy.png │ ├── benchmark_patch.png │ ├── benchmark_snr.png │ ├── benchmark_speed.png │ ├── doc │ │ ├── image001.png │ │ ├── image003.png │ │ ├── image005.png │ │ ├── image007.png │ │ ├── image009.png │ │ ├── image011.png │ │ ├── image013.png │ │ ├── image015.png │ │ ├── image017.png │ │ ├── image019.png │ │ ├── image021.png │ │ ├── image023.png │ │ ├── image025.png │ │ ├── image027.png │ │ ├── image029.png │ │ ├── image031.png │ │ ├── image033.png │ │ ├── image035.png │ │ ├── image037.png │ │ ├── image039.png │ │ ├── image041.png │ │ ├── image043.png │ │ ├── image045.png │ │ ├── image047.png │ │ ├── image049.png │ │ └── image051.png │ ├── event_group.png │ ├── fft_clean_operation.png │ ├── figure1_spikesorting.png │ ├── gui_background.png │ ├── manual_gui_menu.png │ ├── nneigh_min_detect.png │ ├── nsight1.png │ ├── nsight2.png │ ├── rho_delta_plot.png │ ├── trials │ │ ├── trials1.png │ │ ├── trials2.png │ │ ├── trials3.png │ │ ├── trials4.png │ │ ├── trials5.png │ │ ├── trials6.png │ │ ├── trials7.png │ │ └── trials8.png │ ├── ui_main.png │ ├── ui_manual1.png │ ├── ui_manual2.png │ ├── ui_manual3.png │ ├── ui_manual4.png │ ├── ui_manual5.png │ ├── ui_manual6.png │ ├── ui_manual7.png │ ├── ui_preview.png │ ├── ui_probe.png │ └── ui_psth.png ├── import_rhd.m ├── import_rhs.m ├── install.txt ├── irc.m ├── irc2.m ├── irc2.prmset ├── irc2_manual.m ├── irc2_scoreboard.m ├── irc2_traces.m ├── irc2klusters.m ├── irc2klusters_v2.m ├── irc2phy.m ├── irc_cuda_delta.cu ├── irc_cuda_delta.ptx ├── irc_cuda_delta_drift.cu ├── irc_cuda_delta_drift.ptx ├── irc_cuda_rho.cu ├── irc_cuda_rho.ptx ├── irc_cuda_rho_drift.cu ├── irc_cuda_rho_drift.ptx ├── irc_gui.m ├── irc_par.m ├── irc_scoreboard.m ├── ironclust.m ├── ironclust_1.prmset ├── isocut5.m ├── isosplit.m ├── jisotonic5.m ├── jrclust.m ├── jrclust_patch │ ├── export_jrclust.m │ ├── loadProbe.m │ ├── neCell2mat.m │ └── processArgs.m ├── jsonlab-1.5 │ ├── AUTHORS.txt │ ├── ChangeLog.txt │ ├── LICENSE_BSD.txt │ ├── README.txt │ ├── examples │ │ ├── demo_jsonlab_basic.m │ │ ├── demo_ubjson_basic.m │ │ ├── jsonlab_basictest.matlab │ │ ├── jsonlab_selftest.m │ │ ├── jsonlab_selftest.matlab │ │ └── jsonlab_speedtest.m │ ├── jsonopt.m │ ├── loadjson.m │ ├── loadubjson.m │ ├── mergestruct.m │ ├── savejson.m │ ├── saveubjson.m │ ├── struct2jdata.m │ └── varargin2struct.m ├── kampff-npx_template.prm ├── kilosort.m ├── kilosort │ ├── PCspikes.mat │ ├── PCspikes2.mat │ ├── initialize_waves0.m │ ├── mexMPmuFEAT.cu │ ├── mexMPregMU.cu │ ├── mexMPregMUcpu.m │ ├── mexWtW2.cu │ └── mexWtW2.exp ├── ksort2.txt ├── localize_moment.m ├── localize_monopole.m ├── localize_monopole_diff.m ├── maximalCliques.m ├── maximalCliques_cvi.m ├── mdaio │ ├── arrayify.m │ ├── pathify32.m │ ├── pathify64.m │ ├── readmda.m │ ├── readmda_block.m │ ├── readmdadims.m │ ├── writemda.m │ ├── writemda16i.m │ ├── writemda16ui.m │ ├── writemda32.m │ ├── writemda32ui.m │ └── writemda64.m ├── meta2struct.m ├── ml_ironclust_spec.m ├── ml_slopefilter_spec.m ├── mountainsort4.prmset ├── mouse_figure.m ├── mov_resize.m ├── multiplot.m ├── neuroshare │ ├── examples │ │ ├── RawFilterDemo.m │ │ ├── RippleNeuroshareDemo1.m │ │ ├── RippleNeuroshareDemo2.m │ │ ├── RipplePollDirectoryForNevRecordings.m │ │ ├── extract_all_data.m │ │ ├── get_ripple_entity.m │ │ ├── low_pass_resample.m │ │ ├── plot_analog.m │ │ ├── plot_isi_hist.m │ │ ├── plot_ripple_analog.m │ │ ├── plot_ripple_channel.m │ │ ├── plot_ripple_hist.m │ │ ├── plot_ripple_spikes.m │ │ ├── plot_spikes.m │ │ └── spike_hist.m │ ├── ns_CloseFile.m │ ├── ns_GetAnalogData.m │ ├── ns_GetAnalogDataBlock.m │ ├── ns_GetAnalogInfo.m │ ├── ns_GetEntityInfo.m │ ├── ns_GetEventData.m │ ├── ns_GetEventInfo.m │ ├── ns_GetFileInfo.m │ ├── ns_GetIndexByTime.m │ ├── ns_GetLastErrorMsg.m │ ├── ns_GetNeuralData.m │ ├── ns_GetNeuralInfo.m │ ├── ns_GetSegmentData.m │ ├── ns_GetSegmentInfo.m │ ├── ns_GetSegmentSourceInfo.m │ ├── ns_GetTimeByIndex.m │ └── ns_OpenFile.m ├── npy-matlab │ ├── .gitignore │ ├── .ipynb_checkpoints │ │ └── npy-checkpoint.ipynb │ ├── LICENSE │ ├── README.md │ ├── constructNPYheader.m │ ├── datToNPY.m │ ├── data │ │ ├── chelsea_float32.npy │ │ ├── chelsea_float64.npy │ │ ├── chelsea_int16.npy │ │ ├── chelsea_int32.npy │ │ ├── chelsea_int64.npy │ │ ├── chelsea_int8.npy │ │ ├── chelsea_uint16.npy │ │ ├── chelsea_uint32.npy │ │ ├── chelsea_uint64.npy │ │ ├── chelsea_uint8.npy │ │ ├── matlab_chelsea_float32.npy │ │ ├── matlab_chelsea_float64.npy │ │ ├── matlab_chelsea_int16.npy │ │ ├── matlab_chelsea_int32.npy │ │ ├── matlab_chelsea_int64.npy │ │ ├── matlab_chelsea_int8.npy │ │ ├── matlab_chelsea_uint16.npy │ │ ├── matlab_chelsea_uint32.npy │ │ ├── matlab_chelsea_uint64.npy │ │ ├── matlab_chelsea_uint8.npy │ │ ├── matlab_sine_float32.npy │ │ ├── matlab_sine_float64.npy │ │ ├── matlab_sine_int16.npy │ │ ├── matlab_sine_int32.npy │ │ ├── matlab_sine_int64.npy │ │ ├── matlab_sine_int8.npy │ │ ├── matlab_sine_uint16.npy │ │ ├── matlab_sine_uint32.npy │ │ ├── matlab_sine_uint64.npy │ │ ├── matlab_sine_uint8.npy │ │ ├── sine_float32.npy │ │ ├── sine_float64.npy │ │ ├── sine_int16.npy │ │ ├── sine_int32.npy │ │ ├── sine_int64.npy │ │ ├── sine_int8.npy │ │ ├── sine_uint16.npy │ │ ├── sine_uint32.npy │ │ ├── sine_uint64.npy │ │ ├── sine_uint8.npy │ │ └── test.npy │ ├── exampleMemmap.m │ ├── npy.ipynb │ ├── readNPY.m │ ├── readNPYheader.m │ ├── test_readNPY.m │ └── writeNPY.m ├── nuke.m ├── openNSx_jjj.m ├── p_ironclust.m ├── param1.prm ├── param2.prm ├── param3.prm ├── param4.prm ├── plotSpikeRaster.m ├── plot_raster.m ├── plot_sort.m ├── post_merge_drift.m ├── post_merge_knn.m ├── post_merge_knn1.m ├── post_merge_knnwav.m ├── prb │ ├── 5trode.prb │ ├── 6trode.prb │ ├── 7trode.prb │ ├── 8trode.prb │ ├── AYA6_day4.prb │ ├── Austin_2shank4x4.prb │ ├── Austin_5shank3x4.prb │ ├── IMEC_3A_4column.prb │ ├── IMEC_3A_4column_july.prb │ ├── IMEC_3A_4column_julyA.prb │ ├── IMEC_3B_1column.prb │ ├── IMEC_3B_1columnR.prb │ ├── IMEC_3B_1columnR_july.prb │ ├── IMEC_3B_1column_july.prb │ ├── IMEC_3B_2column.prb │ ├── IMEC_3B_2column_july.prb │ ├── IMEC_3C_2column.prb │ ├── IMEC_3C_2column_july.prb │ ├── IMEC_3D_2column.prb │ ├── IMEC_3D_2column_july.prb │ ├── IMEC_3E_2column_july.prb │ ├── a4x4nn.prb │ ├── aibs1080.prb │ ├── aibs1080_270.prb │ ├── austin.prb │ ├── austin_2shank.prb │ ├── boyden128.prb │ ├── boyden128.prm │ ├── boyden256.prb │ ├── boyden256A.prb │ ├── boyden256B.prb │ ├── boyden256C.prb │ ├── boyden256D.prb │ ├── boyden256_2A.prb │ ├── boyden256_2B.prb │ ├── boyden256_2C.prb │ ├── boyden256_2D.prb │ ├── boyden256_2E.prb │ ├── boyden256_2F.prb │ ├── boyden256_2G.prb │ ├── boyden256_2H.prb │ ├── boyden256_3C.prb │ ├── boyden256_3D.prb │ ├── boyden256_4A.prb │ ├── boyden256_4B.prb │ ├── boyden256_4C.prb │ ├── boyden256_4D.prb │ ├── boyden256_4G.prb │ ├── boyden4.prb │ ├── boyden64.prb │ ├── bruns64.prb │ ├── buz64.prb │ ├── catalin15.prb │ ├── catalin30.prb │ ├── cnt_edge_32.prb │ ├── ej49_geometry1.prb │ ├── emouse.prb │ ├── example.prb │ ├── flyprobe.prb │ ├── gaoz32.prb │ ├── h1_dudman.prb │ ├── hextrode.prb │ ├── hh1_dudman.prb │ ├── hh2_arseny.prb │ ├── hh2_chronic.prb │ ├── hh2_economo.prb │ ├── hh2_economo1.prb │ ├── hh2_economo2.prb │ ├── hide32.prb │ ├── hide32_new.prb │ ├── hide64.prb │ ├── hires_4x16.prb │ ├── imec1.prb │ ├── imec1_mark.prb │ ├── imec1_richp.prb │ ├── imec2.prb │ ├── imec2_12edge.prb │ ├── imec2_21edge.prb │ ├── imec2_23edge.prb │ ├── imec2_32edge.prb │ ├── imec2_all.prb │ ├── imec2_nerf.prb │ ├── imec2_ucl.prb │ ├── imec2_zshift.prb │ ├── imec2all.prb │ ├── imec2aux.prb │ ├── imec3.prb │ ├── imec3B2.prb │ ├── imec3_150.prb │ ├── imec3_160.prb │ ├── imec3_all.prb │ ├── imec3_hopkins.prb │ ├── imec3_marius.prb │ ├── imec3_opt1.prb │ ├── imec3_opt2.prb │ ├── imec3_opt3.prb │ ├── imec3_opt3_195_245.prb │ ├── imec3_opt4.prb │ ├── imec54_dylan.prb │ ├── imec54_dylan_64.prb │ ├── imec54_dylan_64_shank1.prb │ ├── imec54_dylan_64_shank2.prb │ ├── imec54_dylan_64_shank3.prb │ ├── imec54_dylan_64_shank4.prb │ ├── imec54_dylan_shank1.prb │ ├── imec54_dylan_shank2.prb │ ├── imec54_dylan_shank3.prb │ ├── imec54_dylan_shank4.prb │ ├── imec54_nlx.prb │ ├── imec54_nlx_shank1.prb │ ├── imec54_nlx_shank2.prb │ ├── imec54_nlx_shank3.prb │ ├── imec54_nlx_shank4.prb │ ├── imec54_tahl.prb │ ├── imec54_tahl_shank1.prb │ ├── imec54_tahl_shank2.prb │ ├── imec54_tahl_shank3.prb │ ├── imec54_tahl_shank4.prb │ ├── int128-1dbc.prb │ ├── int128-2dbc.prb │ ├── int128-3dbc.prb │ ├── int128-4dbc.prb │ ├── int128-5dbc.prb │ ├── int128-6dbc.prb │ ├── int128-7dbc.prb │ ├── int128-8-125dbc.prb │ ├── int128-8dbc.prb │ ├── int128-9dbc.prb │ ├── int64-10dbc.prb │ ├── int64-11dbc.prb │ ├── int64-1dbc.prb │ ├── int64-2dbc.prb │ ├── int64-3dbc.prb │ ├── int64-4dbc.prb │ ├── int64-5dbc.prb │ ├── int64-6dbc.prb │ ├── int64-7dbc.prb │ ├── int64-8dbc.prb │ ├── int64-9dbc.prb │ ├── invitro8.prb │ ├── invivo8.prb │ ├── kampff128.prb │ ├── kampff128A.prb │ ├── kampff128B.prb │ ├── kampff128C.prb │ ├── kampff128D.prb │ ├── kampff32.prb │ ├── kampff32A.prb │ ├── kampff32B.prb │ ├── kampff32_2A.prb │ ├── kampff32_2B.prb │ ├── kampff32_2C.prb │ ├── kampff64A.prb │ ├── kampff64B.prb │ ├── ledprobe.prb │ ├── ledprobe_buz.prb │ ├── mea252.prb │ ├── mea256.prb │ ├── mea256yger.prb │ ├── mea60.prb │ ├── mea_49.prb │ ├── mixedbank.prb │ ├── neuroDSM_r64.prb │ ├── neurogrid128.prb │ ├── neuronexus_4x16.prb │ ├── neuronexus_4x16_shank1.prb │ ├── neuropix3A_64c.prb │ ├── ntrode.prb │ ├── nxpoly2.prb │ ├── pedot54.prb │ ├── pedot54_64.prb │ ├── pedot54_64_shank1.prb │ ├── pedot54_64_shank2.prb │ ├── pedot54_64_shank3.prb │ ├── pedot54_64_shank4.prb │ ├── pedot54_shank1.prb │ ├── pedot54_shank2.prb │ ├── pedot54_shank3.prb │ ├── pedot54_shank4.prb │ ├── pen60.prb │ ├── poly2nn.prb │ ├── poly3nn.prb │ ├── qtrodenn.prb │ ├── rect64.prb │ ├── rhs32.prb │ ├── rhs32ito.prb │ ├── rhs32ito2.prb │ ├── sample.prb │ ├── sample_10_13.prb │ ├── sample_2shanks.prb │ ├── sample_msort.prb │ ├── sample_v1.prb │ ├── schoonover32.prb │ ├── silico120_1col_1.prb │ ├── silico120_1col_2.prb │ ├── silico120_1col_3.prb │ ├── silico120_1col_4.prb │ ├── silico120_2colA_1.prb │ ├── silico120_2colA_2.prb │ ├── silico120_2colA_3.prb │ ├── silico120_2colB_1.prb │ ├── silico120_2colB_2.prb │ ├── silico120_2colC_1.prb │ ├── silico120_3col_1.prb │ ├── silico120_3col_2.prb │ ├── silico120_4col2_1.prb │ ├── silico120_4col2_2.prb │ ├── silico120_4col_1.prb │ ├── silico_8x_120_2colA.prb │ ├── silico_8x_120_2colB.prb │ ├── silico_8x_120_3colA.prb │ ├── silico_8x_120_3colB.prb │ ├── silico_8x_120_4colA.prb │ ├── silico_8x_120_4colB.prb │ ├── silico_8x_120_4colC.prb │ ├── silico_8x_2colA.prb │ ├── silico_8x_2colB.prb │ ├── silico_8x_3colA.prb │ ├── silico_8x_3colB.prb │ ├── silico_8x_4col.prb │ ├── silico_8x_4colA.prb │ ├── silico_8x_4colB.prb │ ├── silico_feb8_1colA.prb │ ├── silico_feb8_1colB.prb │ ├── silico_feb8_1colC.prb │ ├── silico_feb8_1colD.prb │ ├── silico_feb8_2colA16_1.prb │ ├── silico_feb8_2colA16_2.prb │ ├── silico_feb8_2colA16_3.prb │ ├── silico_feb8_2colA16_4.prb │ ├── silico_feb8_2colA_1.prb │ ├── silico_feb8_2colA_2.prb │ ├── silico_feb8_2colA_3.prb │ ├── silico_feb8_2colA_4.prb │ ├── silico_feb8_2colA_60.prb │ ├── silico_feb8_2colB16_1.prb │ ├── silico_feb8_2colB16_2.prb │ ├── silico_feb8_2colB16_3.prb │ ├── silico_feb8_2colB16_4.prb │ ├── silico_feb8_2colB_1.prb │ ├── silico_feb8_2colB_2.prb │ ├── silico_feb8_2colB_3.prb │ ├── silico_feb8_2colB_4.prb │ ├── silico_feb8_2colB_60.prb │ ├── silico_feb8_2colC16_1.prb │ ├── silico_feb8_2colC16_2.prb │ ├── silico_feb8_2colC16_3.prb │ ├── silico_feb8_2colC16_4.prb │ ├── silico_feb8_3colA_90.prb │ ├── silico_feb8_3colB_90.prb │ ├── silico_feb8_4col.prb │ ├── silico_feb8_4colA_1.prb │ ├── silico_feb8_4colA_2.prb │ ├── silico_feb8_4colA_3.prb │ ├── silico_feb8_4colA_4.prb │ ├── silico_feb8_4colA_60.prb │ ├── silico_feb8_4colB.prb │ ├── silico_feb8_4colB_1.prb │ ├── silico_feb8_4colB_2.prb │ ├── silico_feb8_4colB_3.prb │ ├── silico_feb8_4colB_4.prb │ ├── silico_feb8_4colB_60.prb │ ├── silico_feb8_4col_120.prb │ ├── silico_jul_2colA.prb │ ├── silico_jul_2colA16.prb │ ├── silico_jul_2colB.prb │ ├── silico_jul_2colB16.prb │ ├── silico_jul_2colC16.prb │ ├── silico_jul_4colA.prb │ ├── silico_jul_4colB.prb │ ├── silico_oct18_2colA.prb │ ├── silico_oct18_2colA16.prb │ ├── silico_oct18_2colB.prb │ ├── silico_oct18_2colB16.prb │ ├── silico_oct18_2colC16.prb │ ├── silico_oct18_4colA.prb │ ├── silico_oct18_4colB.prb │ ├── swt1_imec.prb │ ├── swt1_pedot.prb │ ├── swt2_aleks.prb │ ├── tetrode.prb │ ├── tetrodes.prb │ ├── tritrode.prb │ ├── unitrode.prb │ ├── yingxue.prb │ ├── yuri64.prb │ └── zengcai.prb ├── prb_json │ ├── int128-1dbc.json │ ├── int128-2dbc.json │ ├── int128-3dbc.json │ ├── int128-4dbc.json │ ├── int128-5dbc.json │ ├── int128-6dbc.json │ ├── int128-7dbc.json │ ├── int128-8-125dbc.json │ ├── int128-8dbc.json │ ├── int128-9dbc.json │ ├── int64-10dbc.json │ ├── int64-11dbc.json │ ├── int64-1dbc.json │ ├── int64-2dbc.json │ ├── int64-3dbc.json │ ├── int64-4dbc.json │ ├── int64-5dbc.json │ ├── int64-6dbc.json │ ├── int64-7dbc.json │ ├── int64-8dbc.json │ ├── int64-9dbc.json │ └── sample.json ├── ranksort.m ├── real_template.prm ├── rhs32_template.prm ├── rhs_template.prm ├── run_irc.m ├── run_ksort2.m ├── sample.meta ├── sample3.meta ├── sample_list.txt ├── sample_sample_merge.prm ├── sbatch_bionet.m ├── sbatch_magland_synth.m ├── scripts │ ├── S190322_hybrid_drift.m │ ├── S190402_monopolefit.m │ ├── S190516_hybrid_static.m │ ├── S190529_params.m │ ├── S190530_fix_monotrode.m │ ├── S190530_fix_paired.m │ ├── S190622_irc_demo.m │ ├── S190622_irc_demo_2d.m │ ├── S190624_speed_gpu.m │ ├── S190702_drift_merge.m │ ├── S190718_burst_merge.m │ ├── S190911_memory_profile.m │ ├── S190919_parfeval.m │ ├── S190920_test_compress.m │ ├── S190921_memory_profile_irc2.m │ ├── S191011_english_batch.m │ ├── S191013_english_drift.m │ ├── S191014_english_uled.m │ ├── S191016_load_validation.m │ ├── S191016_spikeforest_plot.m │ ├── S191024_fread.m │ ├── S191029_compare_irc_ks2.m │ ├── S191118_spikeforest_plot.m │ ├── S191209_join_dat_english_uled.m │ ├── S191210_memory_profile_irc2.m │ ├── S191224_pctdemo.m │ ├── S200110_compare_firings_mda.m │ ├── S200131_copy_english.m │ ├── S200203_english_r01.m │ ├── S200304_emg_simm.m │ ├── S200324_longrecordings.m │ ├── S200403_spikeforest_plot.m │ ├── S200414_longrecordings_static.m │ └── test_parfor_fwrite.m ├── search_delta_drift.cu ├── search_delta_drift.ptx ├── search_min_drift.cu ├── search_min_drift.ptx ├── search_monopole.m ├── settings.scoreboard ├── settings2.scoreboard ├── sf_json2tbl_study.m ├── show_drift_view.m ├── spatial_whiten.m ├── spykingcircus.prmset ├── static_diff_template.prm ├── static_template.prm ├── struct_compare.m ├── tbl_acc_prc_rcl0.txt ├── test │ ├── 191014_runtime_comparison │ ├── 191025_runtime_comparison_v5.0.6 │ ├── 191029_ksort2_drift.txt │ ├── 191029_ksort2_static.txt │ ├── 191104_ksort2_vs_irc_overlap_burst.m │ ├── S191029_irc2_drift.txt │ ├── S191029_irc2_static.txt │ ├── S191104_ksort2_vs_irc_overlap_burst.m │ ├── hybrid_janelia_static_drift.txt │ ├── hybrid_janelia_static_drift_tetrode.txt │ └── spikeforest_2019-1015 │ │ ├── average_accuracy_2019-1015.csv │ │ ├── average_precision_2019-1015.csv │ │ ├── average_recall_2019-1015.csv │ │ ├── average_runtime_2019-1015.csv │ │ ├── count_accuracy_2019-1015.csv │ │ ├── median_accuracy_2019-1015.csv │ │ ├── median_precision_2019-1015.csv │ │ ├── median_recall_2019-1015.csv │ │ └── median_runtime_2019-1015.csv ├── test_irc.m ├── testfun.m ├── tetrode_template.prm ├── version.txt ├── vline0.m ├── writemda_fid.m └── xml2struct.m ├── ml_ironclust.mp ├── ml_slopefilter.mp ├── python ├── .vscode │ └── settings.json └── main.py ├── setup_conda.sh ├── spikeforest_analysis.ipynb └── test_ironclust.txt /.gitignore: -------------------------------------------------------------------------------- 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