├── .gitignore ├── README.md ├── data ├── AIS │ ├── transit_segments.csv │ └── vessel_information.csv ├── TNNASHVI.txt ├── baseball-archive-2011.sqlite ├── baseball.csv ├── baseball.dat ├── besx97e.dta ├── bikeshare.csv ├── bodyfat.dat ├── brasil_capitals.txt ├── cancer.csv ├── cdystonia.csv ├── concrete.csv ├── credit.csv ├── cty.dat ├── ebola │ ├── LICENSE │ ├── guinea_data │ │ ├── 2014-08-04.csv │ │ ├── 2014-08-26.csv │ │ ├── 2014-08-27.csv │ │ ├── 2014-08-30.csv │ │ ├── 2014-08-31.csv │ │ ├── 2014-09-02.csv │ │ ├── 2014-09-04.csv │ │ ├── 2014-09-07.csv │ │ ├── 2014-09-08.csv │ │ ├── 2014-09-09.csv │ │ ├── 2014-09-11.csv │ │ ├── 2014-09-14.csv │ │ ├── 2014-09-16.csv │ │ ├── 2014-09-17.csv │ │ ├── 2014-09-19.csv │ │ ├── 2014-09-21.csv │ │ ├── 2014-09-22.csv │ │ ├── 2014-09-23.csv │ │ ├── 2014-09-24.csv │ │ ├── 2014-09-26.csv │ │ ├── 2014-09-30.csv │ │ └── 2014-10-01.csv │ ├── liberia_data │ │ ├── 2014-06-16.csv │ │ ├── 2014-06-17.csv │ │ ├── 2014-06-22.csv │ │ ├── 2014-06-24.csv │ │ ├── 2014-06-25.csv │ │ ├── 2014-06-28.csv │ │ ├── 2014-06-29.csv │ │ ├── 2014-07-01.csv │ │ ├── 2014-07-02.csv │ │ ├── 2014-07-03.csv │ │ ├── 2014-07-07.csv │ │ ├── 2014-07-08.csv │ │ ├── 2014-07-10.csv │ │ ├── 2014-07-13.csv │ │ ├── 2014-07-17.csv │ │ ├── 2014-07-20.csv │ │ ├── 2014-07-24.csv │ │ ├── 2014-07-26.csv │ │ ├── 2014-08-02.csv │ │ ├── 2014-08-04.csv │ │ ├── 2014-08-12.csv │ │ ├── 2014-08-15.csv │ │ ├── 2014-08-17.csv │ │ ├── 2014-08-18.csv │ │ ├── 2014-08-20.csv │ │ ├── 2014-08-25.csv │ │ ├── 2014-08-28.csv │ │ ├── 2014-09-01.csv │ │ ├── 2014-09-02.csv │ │ ├── 2014-09-03.csv │ │ ├── 2014-09-04.csv │ │ ├── 2014-09-05.csv │ │ ├── 2014-09-06.csv │ │ ├── 2014-09-07.csv │ │ ├── 2014-09-08.csv │ │ ├── 2014-09-10.csv │ │ ├── 2014-09-11.csv │ │ ├── 2014-09-12.csv │ │ ├── 2014-09-13.csv │ │ ├── 2014-09-14.csv │ │ ├── 2014-09-15.csv │ │ ├── 2014-09-16.csv │ │ ├── 2014-09-17-v125.csv │ │ ├── 2014-09-20-v128.csv │ │ ├── 2014-09-21-v129.csv │ │ ├── 2014-09-23-v131.csv │ │ ├── 2014-09-25-v133.csv │ │ ├── 2014-09-26-v134.csv │ │ ├── 2014-09-27-v135.csv │ │ ├── 2014-09-28-v136.csv │ │ ├── 2014-09-30-v138.csv │ │ ├── 2014-10-01-v139.csv │ │ ├── 2014-10-03-v141.csv │ │ ├── 2014-10-04-v142.csv │ │ ├── 2014-10-05-v143.csv │ │ ├── 2014-10-07-v145.csv │ │ ├── 2014-10-08-v146.csv │ │ ├── 2014-10-09-v147.csv │ │ ├── 2014-10-10-v148.csv │ │ ├── 2014-10-11-v149.csv │ │ ├── 2014-10-12-v150.csv │ │ ├── 2014-10-13-v151.csv │ │ ├── 2014-10-16-v154.csv │ │ ├── 2014-10-17-v155.csv │ │ ├── 2014-10-18-v156.csv │ │ ├── 2014-10-19-v157.csv │ │ ├── 2014-10-20-v158.csv │ │ ├── 2014-10-21-v159.csv │ │ ├── 2014-10-22-v160.csv │ │ ├── 2014-10-23-v161.csv │ │ ├── 2014-10-24-v162.csv │ │ ├── 2014-10-25-v163.csv │ │ ├── 2014-10-28-v166.csv │ │ ├── 2014-10-29-v167.csv │ │ ├── 2014-10-30-v168.csv │ │ ├── 2014-10-31-v169.csv │ │ ├── 2014-11-02-v171.csv │ │ ├── 2014-11-04-v173.csv │ │ ├── 2014-11-08-v177.csv │ │ ├── 2014-11-14-v183.csv │ │ ├── 2014-11-15-v184.csv │ │ ├── 2014-11-19-v188.csv │ │ ├── 2014-11-20-v189.csv │ │ ├── 2014-11-21-v190.csv │ │ ├── 2014-11-23-v192.csv │ │ ├── 2014-11-24-v193.csv │ │ ├── 2014-11-26.csv │ │ ├── 2014-11-27.csv │ │ ├── 2014-11-28.csv │ │ ├── 2014-11-29.csv │ │ ├── 2014-11-30.csv │ │ ├── 2014-12-01.csv │ │ ├── 2014-12-02.csv │ │ ├── 2014-12-03.csv │ │ ├── 2014-12-04.csv │ │ ├── 2014-12-05.csv │ │ ├── 2014-12-06.csv │ │ ├── 2014-12-07.csv │ │ ├── 2014-12-08.csv │ │ └── 2014-12-09.csv │ └── sl_data │ │ ├── 2014-08-12-v77.csv │ │ ├── 2014-08-13-v78.csv │ │ ├── 2014-08-14-v79.csv │ │ ├── 2014-08-15-v80.csv │ │ ├── 2014-08-16-v81.csv │ │ ├── 2014-08-17-v82.csv │ │ ├── 2014-08-18-v83.csv │ │ ├── 2014-08-19-v84.csv │ │ ├── 2014-08-20-v85.csv │ │ ├── 2014-08-21-v86.csv │ │ ├── 2014-08-22-v87.csv │ │ ├── 2014-08-23-v88.csv │ │ ├── 2014-08-24-v89.csv │ │ ├── 2014-08-25-v90.csv │ │ ├── 2014-08-26-v91.csv │ │ ├── 2014-08-27-v92.csv │ │ ├── 2014-08-28-v93.csv │ │ ├── 2014-08-29-v94.csv │ │ ├── 2014-08-30-v95.csv │ │ ├── 2014-08-31-v96.csv │ │ ├── 2014-09-01-v97.csv │ │ ├── 2014-09-02-v98.csv │ │ ├── 2014-09-03-v99.csv │ │ ├── 2014-09-05-v101.csv │ │ ├── 2014-09-06-v102.csv │ │ ├── 2014-09-07-v103.csv │ │ ├── 2014-09-08-v104.csv │ │ ├── 2014-09-09-v105.csv │ │ ├── 2014-09-10-v106.csv │ │ ├── 2014-09-11-v107.csv │ │ ├── 2014-09-12-v108.csv │ │ ├── 2014-09-13-v109.csv │ │ ├── 2014-09-14-v110.csv │ │ ├── 2014-09-15-v111.csv │ │ ├── 2014-09-16-v112.csv │ │ ├── 2014-09-17-v113.csv │ │ ├── 2014-09-18-v114.csv │ │ ├── 2014-09-19-v115.csv │ │ ├── 2014-09-20-v116.csv │ │ ├── 2014-09-21-v117.csv │ │ ├── 2014-09-22-v118.csv │ │ ├── 2014-09-23-v119.csv │ │ ├── 2014-09-24-v120.csv │ │ ├── 2014-09-25-v121.csv │ │ ├── 2014-09-26-v122.csv │ │ ├── 2014-09-27-v123.csv │ │ ├── 2014-09-28-v124.csv │ │ ├── 2014-09-29-v125.csv │ │ ├── 2014-09-30-v126.csv │ │ ├── 2014-10-01-v127.csv │ │ ├── 2014-10-03-v129.csv │ │ ├── 2014-10-04-v130.csv │ │ ├── 2014-10-05-v131.csv │ │ ├── 2014-10-06-v132.csv │ │ ├── 2014-10-07-v133.csv │ │ ├── 2014-10-08-v134.csv │ │ ├── 2014-10-10-v136.csv │ │ ├── 2014-10-11-v137.csv │ │ ├── 2014-10-12-v138.csv │ │ ├── 2014-10-13-v139.csv │ │ ├── 2014-10-14-v140.csv │ │ ├── 2014-10-16-v141.csv │ │ ├── 2014-10-16-v142.csv │ │ ├── 2014-10-17-v143.csv │ │ ├── 2014-10-18-v144.csv │ │ ├── 2014-10-19-v145.csv │ │ ├── 2014-10-20-v146.csv │ │ ├── 2014-10-21-v147.csv │ │ ├── 2014-10-22-v148.csv │ │ ├── 2014-10-23-v149.csv │ │ ├── 2014-10-24-v150.csv │ │ ├── 2014-10-25-v151.csv │ │ ├── 2014-10-26-v152.csv │ │ ├── 2014-10-27-v153.csv │ │ ├── 2014-10-28-v154.csv │ │ ├── 2014-10-30-v156.csv │ │ ├── 2014-10-31-v157.csv │ │ ├── 2014-11-01-v158.csv │ │ ├── 2014-11-02-v159.csv │ │ ├── 2014-11-06-v163.csv │ │ ├── 2014-11-07-v164.csv │ │ ├── 2014-11-08-v165.csv │ │ ├── 2014-11-10-v167.csv │ │ ├── 2014-11-12-v169.csv │ │ ├── 2014-11-13.csv │ │ ├── 2014-11-14.csv │ │ ├── 2014-11-15.csv │ │ ├── 2014-11-16.csv │ │ ├── 2014-11-17.csv │ │ ├── 2014-11-18-v175.csv │ │ ├── 2014-11-19-v176.csv │ │ ├── 2014-11-20-v177.csv │ │ ├── 2014-11-21-v178.csv │ │ ├── 2014-11-22-v179.csv │ │ ├── 2014-11-23-v180.csv │ │ ├── 2014-11-24-v181.csv │ │ ├── 2014-11-28.csv │ │ ├── 2014-11-29.csv │ │ ├── 2014-12-01.csv │ │ ├── 2014-12-04.csv │ │ ├── 2014-12-05.csv │ │ ├── 2014-12-06.csv │ │ └── 2014-12-13.csv ├── heart_rate.csv ├── heart_rate.txt ├── measles.csv ├── measles.xlsx ├── melanoma_data.py ├── microbiome.csv ├── microbiome │ ├── MID1.xls │ ├── MID2.xls │ ├── MID3.xls │ ├── MID4.xls │ ├── MID5.xls │ ├── MID6.xls │ ├── MID7.xls │ ├── MID8.xls │ ├── MID9.xls │ └── metadata.xls ├── microbiome_missing.csv ├── mushroom.csv ├── nashville_precip.txt ├── occupancy.csv ├── pima-indians-diabetes.data.txt ├── pima-indians-diabetes.metadata.txt ├── pitches.csv ├── pitches.md ├── prostate.data.txt ├── radon.csv ├── salmon.txt ├── srrs2.dat ├── survey.db ├── test_scores.csv ├── titanic.html ├── titanic.xls ├── vlbw.csv ├── walker.txt ├── wine.dat └── wisconsin_breast_cancer.csv ├── environment.yml ├── examples ├── abc.py ├── baseball_anneal.py ├── baseball_cluster.py ├── beta_blocker_dp.py ├── bioassay.py ├── bioassay_pymc.py ├── bisection.py ├── boxplot_solution.py ├── dask.py ├── fact.c ├── fact.h ├── fact.pyx ├── fixed_point.py ├── gbrt_vlbw.py ├── gd_opt.py ├── gradient_descent2.py ├── import_ebola.py ├── import_microbiome.py ├── iq_advi.py ├── metropolis_tuned.py ├── minibatch_advi.py ├── moth_em.py ├── nash_temp_gp.py ├── nec_cluster.py ├── pima_neural_network.py ├── placenta_previa.py ├── placenta_previa_informative.py ├── poisson_em.py ├── posterior_binomial.py ├── random_forest_cv.py ├── sir_sensitivity.py ├── studentized_interval.py ├── temperature_gp.py ├── temperature_gp_sk.py ├── titanic_svm.py ├── trapezoid.c ├── trapezoid.pyx ├── tree_split_cost.py ├── vector_mat.py ├── vlbw_logistic.py ├── wine_anneal.py └── wine_tf.py ├── homework ├── Homework 1.ipynb └── Homework 2.ipynb └── notebooks ├── Section0_1-IPython_and_Jupyter.ipynb ├── Section0_2-Plotting-and-Visualization.ipynb ├── Section1_1-Univariate-and-Multivariate-Optimization.ipynb ├── Section1_2-Combinatorial-Optimization.ipynb ├── Section2_1-Introduction-to-Pandas.ipynb ├── Section2_2-Pandas-Fundamentals.ipynb ├── Section3_1-Expectation-Maximization.ipynb ├── Section3_2-Bootstrapping.ipynb ├── Section3_3-High-Performance-Python.ipynb ├── Section4_1-Bayesian-Computation.ipynb ├── Section4_10-Bayesian-Workflow.ipynb ├── Section4_2-MCMC.ipynb ├── Section4_3-Introduction-to-PyMC.ipynb ├── Section4_4-Hamiltonian-Monte-Carlo.ipynb ├── Section4_5-Model-Building-with-PyMC.ipynb ├── Section4_6-Model-Checking.ipynb ├── Section4_7-Multilevel-Modeling.ipynb ├── Section4_8-Introduction-to-Variational-Bayesian-Methods.ipynb ├── Section4_9-Model-Comparison.ipynb ├── Section5_1-Gaussian-Processes.ipynb ├── Section6_1-Scikit-Learn.ipynb ├── Section6_2-Clustering.ipynb ├── Section6_3-Model-Selection-and-Validation.ipynb ├── Section6_4-Support-Vector-Machines.ipynb ├── Section6_5-Decision-Trees.ipynb ├── Section6_6-Boosting.ipynb ├── Section6_7-Machine-Learning-Visualization.ipynb ├── Section7_1-Neural-Networks.ipynb ├── Section7_2-Introduction-to-PyTorch.ipynb ├── Section7_3-Bayesian-Neural-Networks.ipynb ├── Section7_4-Parallel-Processing.ipynb ├── Section7_5-Database-Programming.ipynb ├── images ├── 00-14-21-150017.png ├── 02_convolution.png ├── 02_network_flowchart.png ├── 123.png ├── Pytorch_logo.png ├── Sunspots_1302_Sep_2011_by_NASA.jpg ├── advi.png ├── binary_doubling.png ├── boxplot_example.png ├── chinese_restaurant.jpg ├── comparison_CPU_GPU.png ├── cython.png ├── dag.png ├── expression_graph.png ├── gates.png ├── hearing_aid.jpg ├── how_radon_enters.jpg ├── ipython_architecture.png ├── iris.jpg ├── listComprehensions.gif ├── mediation.png ├── moderation_figure.png ├── moth.jpg ├── ordinal.png ├── padding.png ├── padding_types.png ├── partial_pooled_model.png ├── pooled_model.png ├── python.png ├── qtconsole.png ├── sklearn.png ├── sliding_window.png ├── snakeviz.png ├── 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