├── .gitignore ├── .todo.txt ├── .travis.yml ├── AUTHORS ├── CONTRIBUTE ├── Dockerfile ├── INSTALL ├── LICENSE ├── Make.rules.in ├── Makefile.in ├── NEWS ├── README.blas ├── README.docker ├── README.macos ├── README.md ├── SPRNT_UserGuide └── SPRNT_UserGuide.pdf ├── ThirdParty ├── BLAS │ ├── Makefile │ ├── fetch_blas.sh │ ├── make.inc.local │ └── src │ │ └── .ignore ├── CMLIB │ ├── Makefile │ ├── fetch_cmlib.sh │ └── src │ │ └── .empty ├── README ├── Repositories │ ├── BLAS │ │ └── blas-3.6.0.tar.gz │ ├── CMLIB │ │ └── cmlib-3.0.tar.gz │ ├── README │ └── UF │ │ └── SuiteSparse-3.0.0.tar.gz └── UF │ ├── Makefile │ ├── UFconfig.mk.linux │ ├── csolver.C │ ├── fetch_ufsparse.sh │ ├── lsolver.C │ ├── lsolver.h │ ├── solver_def.h │ └── solver_vec.h ├── UFconfig.mk.in ├── ax_loc_blas.m4 ├── ax_loc_cxx_compile_stdcxx_0x.m4 ├── bin └── .empty ├── configure ├── configure.ac ├── demo ├── Makefile ├── README ├── api_demo.C └── run_demo.sh ├── doc ├── SPRNT_UserGuide │ ├── SPRNT_UserGuide.aux │ ├── SPRNT_UserGuide.log │ ├── SPRNT_UserGuide.pdf │ ├── SPRNT_UserGuide.synctex.gz │ ├── SPRNT_UserGuide.tex │ ├── bibliographyfile.bib │ ├── bibliographyfile.log │ ├── definitions.idx │ └── figure │ │ ├── Connect_1.png │ │ ├── Document 1.png │ │ ├── HP.png │ │ ├── LayoutOfConnectovity │ │ ├── Connect_1.png │ │ ├── Connect_2.png │ │ ├── Connect_3.png │ │ └── Connect_4.png │ │ ├── Mac_installation_1.png │ │ ├── Mac_installation_2.png │ │ ├── Mac_installation_3.png │ │ ├── NHDPlus.png │ │ ├── Preprocessor_folder.png │ │ ├── SPRNT install steps.pdf │ │ ├── Screenshot - 04262016 - 09_17_44 PM.png │ │ ├── Screenshot - 04262016 - 09_20_04 PM.png │ │ ├── Trap.png │ │ ├── Workflow.pdf │ │ ├── XY.png │ │ ├── aout_1.png │ │ ├── aout_2.png │ │ ├── aout_3.png │ │ ├── aout_4.png │ │ ├── cd sprnt.png │ │ ├── cd_to_bin.png │ │ ├── files and their contents.pdf │ │ ├── git_clone_finish.png │ │ ├── how_to_clone_sprnt.png │ │ ├── ls_in_bin.png │ │ ├── make.png │ │ ├── mv_to_bin.png │ │ ├── outputfile.png │ │ ├── outputfileformat.png │ │ ├── pusedo.png │ │ ├── runsprnt.png │ │ ├── startrun.png │ │ ├── tgraph.png │ │ ├── tgraph_boundary.png │ │ ├── tgraph_qsource.png │ │ ├── tt.png │ │ ├── 簡報1.pptx │ │ └── 簡報1 │ │ ├── Connect_4.png │ │ ├── 滑動1.png │ │ ├── 滑動2.png │ │ └── 滑動3.png ├── sprint_manual_rev.pdf └── src │ ├── Figs │ ├── cross_carton.pdf │ ├── flow-eps-converted-to.pdf │ ├── flow.eps │ ├── rbd-eps-converted-to.pdf │ ├── rbd.eps │ ├── trap-eps-converted-to.pdf │ ├── xsec_sideway.pdf │ └── yy-eps-converted-to.pdf │ └── sprnt_manual.tex ├── examples ├── Fread_method_test │ ├── README │ ├── f1.spt │ └── f2.spt ├── Makefile ├── README ├── a10.spt ├── c0.spt ├── f2.spt ├── golden │ ├── a10.spt.output.dat │ ├── c0.spt.output.dat │ ├── f1.spt.output.dat │ ├── f2.spt.output.dat │ ├── i11.spt.output.dat │ ├── m1.spt.output.dat │ ├── m12.spt.output.dat │ ├── m9.spt.output.dat │ ├── n2.spt.output.dat │ ├── n3.spt.output.dat │ ├── s4.spt.output.dat │ ├── t5.spt.output.dat │ ├── u6.spt.output.dat │ ├── w7.spt.output.dat │ └── y8.spt.output.dat ├── i11.spt ├── m1.spt ├── m12.spt ├── m9.spt ├── n2.spt ├── n3.spt ├── reference_slope_test │ ├── README │ ├── r1.spt │ └── r2.spt ├── s4.spt ├── t5.spt ├── u6.spt ├── w7.spt └── y8.spt ├── include └── .empty ├── lib └── .empty ├── spt ├── Makefile ├── new_parser.C ├── run_spt.C ├── sim_parse.C ├── sim_parse.h ├── smap.h ├── spt_rolling.cpp └── sptchksum.h ├── src ├── Makefile ├── base.h ├── blaspr.h ├── build_defs.h ├── dspline.C ├── dspline.h ├── flexvec.h ├── matrix.C ├── matrix.h ├── ngraph.C ├── ngraph.h ├── node.C ├── node.h ├── options.h ├── solver_def.h ├── solver_interface.C ├── solver_interface.h ├── sources.C ├── sources.h ├── sptcomplex.h ├── spttimemeas.h ├── subcatch.C ├── subcatch.h ├── tdarray.h ├── waveforms.h ├── xsection.C ├── xsection.h ├── xsmodel.C ├── xsmodel.h ├── xstrans.C └── xstrans.h ├── uf_makefile.local.in └── util ├── README ├── chk_output.sh ├── extract_node.sh ├── extract_time.sh ├── run_docker.sh ├── 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