├── CONFIGURATION ├── .DS_Store ├── ._.DS_Store ├── ._config_annocript.txt ├── ._config_user.txt ├── ._program_config.txt ├── ._uniprot_db.sql ├── config_user.txt ├── config_user.txt~ ├── program_config.txt ├── uniprot_db.sql ├── uniref_db.sql ├── variables.txt └── variables.txt~ ├── COPYRIGHT ├── DL_PROGRAMS ├── CPC2-beta.tar.gz ├── dna2pep-1.1.tar.gz └── install_all.sh ├── GUIDE ├── ADVANCED_USAGE.md ├── ADVANCED_USAGE.md~ ├── FAQ.md ├── HISTORY.md ├── HISTORY.md~ ├── INSTALL.md ├── INSTALL.md~ ├── INTRO.md ├── INTRO.md~ ├── OUTPUT.md ├── OUTPUT.md~ ├── TUTORIAL.md └── TUTORIAL.md~ ├── LIB ├── .DS_Store ├── ._.DS_Store ├── ._annocript_executor.pl ├── ._db_creator.pm ├── ._html_management.pm ├── ._mysql_db_management.pm ├── ._programs_management.pm ├── ._programs_out_parser.pm ├── ._utils.pm ├── ann_seqs_stats.R ├── annocript_executor.pl ├── annocript_management.pm ├── db_creator.pm ├── execute_programs.pm ├── fasta_management.pm ├── files_management.pm ├── html_management.pm ├── mysql_db_management.pm ├── output_and_stats.pm ├── programs_management.pm ├── programs_out_parser.pm ├── std_lib.pm ├── tables_2_barplot.R ├── tables_2_pie_chart.R └── utils.pm ├── README.md ├── README.md~ ├── USEFUL ├── .DS_Store ├── ._.DS_Store ├── a_logo.png ├── example_transcriptome.fasta ├── faSomeRecords └── trial_transcriptome.fasta ├── annocript.pl └── install.pl /CONFIGURATION/.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/frankMusacchia/Annocript/HEAD/CONFIGURATION/.DS_Store -------------------------------------------------------------------------------- /CONFIGURATION/._.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/frankMusacchia/Annocript/HEAD/CONFIGURATION/._.DS_Store -------------------------------------------------------------------------------- /CONFIGURATION/._config_annocript.txt: 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