├── .gitattributes ├── DataColor Manual.pdf ├── DataColor v1.0 操作手册.pdf ├── License ├── Method.pdf ├── Metric Parameter description.pdf ├── README.md ├── image ├── DataColor.png └── index1.png └── test_data ├── 1.Sample collection ├── Calendar plotter │ └── Calendar.csv ├── Correlation matrix │ ├── csdata.csv │ └── csexcel.xlsx ├── Geographical plotter │ └── wordmap.xlsx ├── Multivariable histogram │ └── diamonds.csv └── Scatter and PCA plotter │ └── Scatter.xlsx ├── 2.Structure and evolution ├── Chr. circle plotter │ ├── gc.csv │ ├── gene_count.csv │ ├── length.csv │ ├── links.csv │ └── repeat.csv ├── Chr. linear plotter │ ├── density1.csv │ ├── density2.csv │ ├── length1.csv │ └── length2.csv ├── Contact matrix (Hi-C) │ └── Hi-C.txt ├── Density peak plotter │ └── ks.xlsx └── Topologically assocaited domain │ └── Hi-C.txt ├── 3.Expression analysis ├── 2D plotter │ ├── Circle heatmap │ │ ├── csdata.csv │ │ └── csexcel.xlsx │ └── Heatmap │ │ ├── csdata.csv │ │ └── csexcel.xlsx ├── 3D plotter │ ├── 3D bar plotter │ │ ├── csdata1.csv │ │ └── csexcel1.xlsx │ ├── 3D cluster by Col │ │ ├── csdata1.csv │ │ └── csexcel1.xlsx │ ├── 3D cluster by Row │ │ ├── csdata1.csv │ │ └── csexcel1.xlsx │ ├── 3D heatmap │ │ ├── csdata1.csv │ │ └── csexcel1.xlsx │ └── 3D scatter plotter │ │ ├── csdata1.csv │ │ └── csexcel1.xlsx └── Isoheight plotter │ ├── Isoheight plotter (cluster) │ ├── hm1.csv │ └── hmexcel1.xlsx │ └── Isoheight plotter │ ├── hm1.csv │ └── hmexcel1.xlsx └── 4.Functional omics ├── Anatomogram plotter └── anatomogram.xlsx ├── Bubble plotter └── go_enrichment.xls ├── Dot plotter └── hm2.csv ├── Enrichment bar plotter └── go_enrichment.xls ├── Network plotter └── collinearity.xlsx ├── Treemap └── go_enrichment.xls └── Wordcloud plotter ├── wc_data.xls └── xin.png /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/frankgenome/DataColor/HEAD/.gitattributes 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