├── .classpath ├── .gitattributes ├── .gitignore ├── .project ├── .settings └── org.eclipse.jdt.core.prefs ├── CREDITS.TXT ├── Flocking Bsearch.nlogo ├── LICENSE.TXT ├── README.TXT ├── README.md ├── RELEASE_NOTES.TXT ├── dist ├── FileAssociation.nsh ├── behaviorsearch_0.72.tar.gz ├── behaviorsearch_0.72.zip ├── behaviorsearch_0.72_installer.exe ├── dist_include │ ├── behaviorsearch_gui.bat │ ├── behaviorsearch_gui.sh │ ├── behaviorsearch_gui.vbs │ ├── behaviorsearch_headless.bat │ ├── behaviorsearch_headless.command │ ├── behaviorsearch_headless.sh │ ├── bsearch_gui_launch.bat │ ├── bsearch_gui_launch.exe │ ├── test_behaviorsearch.bat │ ├── test_behaviorsearch.bsearch │ ├── test_behaviorsearch.nlogo │ └── test_behaviorsearch.sh ├── googlecode_upload.py ├── icon_installer.ico ├── icon_installer_hq.ico ├── icon_uninstaller.ico ├── install.sh ├── install_to_clusters.sh ├── makejar.xml ├── release.sh ├── upload_release_to_google.sh ├── version_number.txt ├── win_installer.nsi └── win_launcher.nsi ├── documentation ├── docs.css ├── img │ ├── command_line_usage.png │ ├── flocking_fitnessspecFx.png │ ├── flocking_modelruninfoFx.png │ ├── flocking_runoptionsdialogFx.png │ ├── flocking_searchalgorithmoptionsFx.png │ ├── flocking_searchprogressplotFx.png │ ├── flocking_searchspecFx.png │ ├── guiFx.png │ ├── guiFx_tabHighLight.png │ ├── icon_behaviorsearch.png │ └── icon_behaviorsearch_sm.png └── tutorialFx.html ├── examples ├── Example_Fire_Burn_Variance.bsearch ├── Example_Fire_Derivative.bsearch └── Example_Flocking_Convergence.bsearch ├── experiments ├── Ethnocentrism-bench.nlogo ├── StallTest.bsearch ├── TesterError.bsearch ├── TesterErrorIntermittent.bsearch ├── TesterLong.bsearch ├── TesterNoisy.bsearch ├── TesterTemp.bsearch ├── TesterTemp.finalCheckedBests.csv ├── Tester_SearchDriftsToHighNoise.bsearch ├── WolfSheep-bench.nlogo ├── WolfSheep-mutatetest.bsearch ├── WolfSheepExample.bsearch ├── ethno1.bsearch ├── ethnoNew.bsearch ├── ethno_mhc.bsearch ├── flocking1.bsearch ├── flocking1.ga.bsearch ├── flocking1.rand.bsearch ├── flocking_demo.bsearch ├── mutationderivtest.bsearch ├── newtemp.bsearch ├── temp2.bsearch └── temp3.bsearch ├── misc ├── behaviorsearch_screenshot.png ├── forrest_notes.txt ├── icon_behaviorsearch.psd ├── landscape.png └── landscape2.png ├── mySearchOutput.bestHistory.csv ├── mySearchOutput.finalBests.csv ├── mySearchOutput.modelRunHistory.csv ├── mySearchOutput.objectiveFunctionHistory.csv ├── mySearchOutput.searchConfig.xml ├── project └── build.properties ├── resources ├── Behaviorsearch.icns ├── Behaviorsearch.ico ├── ChromosomeTypeList.txt ├── SearchMethodList.txt ├── behaviorsearch.dtd ├── behaviorsearch_model.ico ├── defaultNewSearch.xml ├── icon_behaviorsearch.png ├── icon_behaviorsearch.svg ├── icon_behaviorsearch256.ico ├── icon_behaviorsearch64.ico └── icon_setup.ico ├── scripts ├── averageperformance.py ├── boxplots.py ├── combinesearchresults.py ├── fancystats.py ├── fancystats.pyc ├── plotperformance.py ├── simplestats.py ├── singlebest.py ├── temp.py └── violin_plots.py ├── src └── bsearch │ ├── algorithms │ ├── AbstractSearchMethod.java │ ├── GenerationalGA.java │ ├── MutationHillClimber.java │ ├── RandomSearch.java │ ├── SearchMethod.java │ ├── SearchMethodLoader.java │ ├── SearchParameterException.java │ ├── SimulatedAnnealing.java │ └── StandardGA.java │ ├── app │ ├── BehaviorSearch.java │ ├── BehaviorSearchException.java │ ├── BehaviorSearchGUI.java │ ├── CSVLoggerListener.java │ ├── ConsoleProgressListener.java │ ├── GUIProgressDialog.java │ ├── HelpAboutDialog.java │ ├── HelpInfoDialog.java │ ├── RunOptionsDialog.java │ └── SearchProtocol.java │ ├── evaluation │ ├── DerivativeFitnessFunction.java │ ├── FitnessFunction.java │ ├── LogDataEntry.java │ ├── ResultListener.java │ ├── ResultsArchive.java │ ├── SearchManager.java │ └── StandardFitnessFunction.java │ ├── fx │ ├── AcceptOnExitTableCell.java │ ├── BSearchMain.fxml │ ├── MainController.java │ ├── MainGUI.java │ ├── ProgressController.java │ ├── ProgressDialog.fxml │ ├── RunOptionDialog.fxml │ ├── RunOptionDialogController.java │ └── SearchMethodParamTableRow.java │ ├── nlogolink │ ├── BatchRunner.java │ ├── CSVHelper.java │ ├── ModelRunResult.java │ ├── ModelRunner.java │ ├── ModelRunnerTask.java │ ├── NetLogoLinkException.java │ └── Utils.java │ ├── representations │ ├── BinaryChromosome.java │ ├── Chromosome.java │ ├── ChromosomeFactory.java │ ├── ChromosomeTypeLoader.java │ ├── DummyChromosome.java │ ├── GrayBinaryChromosome.java │ ├── MixedTypeChromosome.java │ ├── RealHypercubeChromosome.java │ └── StandardBinaryChromosome.java │ ├── space │ ├── CategoricalSpec.java │ ├── ConstantSpec.java │ ├── DoubleContinuousSpec.java │ ├── DoubleDiscreteSpec.java │ ├── ParameterSpec.java │ └── SearchSpace.java │ ├── test │ └── BehaviorSearchTest.java │ └── util │ ├── GeneralUtils.java │ ├── Pair.java │ ├── SimpleDiGraph.java │ ├── Stats.java │ └── TempTest.java └── test ├── ErrorTester.nlogo ├── ExtensionTester.nlogo ├── TestProtocol.xml ├── Tester.bsearch ├── Tester.nlogo ├── TesterGANoCache.bsearch ├── TesterNoisy.bsearch ├── TesterNoisy_RS.bsearch ├── TesterSA_Deriv.bsearch ├── TesterSuperRandom.bsearch └── checks ├── Tester1.bestHistory.csv ├── Tester1.finalBests.csv ├── Tester1.modelRunHistory.csv ├── Tester1.objectiveFunctionHistory.csv ├── Tester1.searchConfig.xml ├── Tester2.bestHistory.csv ├── Tester2.finalBests.csv ├── Tester2.modelRunHistory.csv ├── Tester2.objectiveFunctionHistory.csv ├── Tester2.searchConfig.xml ├── TesterGANoCache.bestHistory.csv ├── TesterGANoCache.finalBests.csv ├── TesterGANoCache.finalCheckedBests.csv ├── TesterGANoCache.modelRunHistory.csv ├── TesterGANoCache.objectiveFunctionHistory.csv ├── TesterGANoCache.searchConfig.xml ├── TesterNoisy.bestHistory.csv ├── TesterNoisy.finalBests.csv ├── TesterNoisy.finalCheckedBests.csv ├── TesterNoisy.modelRunHistory.csv ├── TesterNoisy.objectiveFunctionHistory.csv ├── 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