├── .cargo └── config.toml ├── .github ├── CODEOWNERS ├── logos │ └── fulcrumgenomics.svg ├── scripts │ └── update-docs.sh └── workflows │ ├── build_and_test.yml │ └── publish.yml ├── .gitignore ├── Cargo.lock ├── Cargo.toml ├── LICENSE ├── README.md ├── rust-toolchain.toml └── src ├── lib ├── color.rs ├── matcher.rs ├── mod.rs └── seq_io.rs └── main.rs /.cargo/config.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/.cargo/config.toml -------------------------------------------------------------------------------- /.github/CODEOWNERS: -------------------------------------------------------------------------------- 1 | * @nh13 2 | -------------------------------------------------------------------------------- /.github/logos/fulcrumgenomics.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/.github/logos/fulcrumgenomics.svg -------------------------------------------------------------------------------- /.github/scripts/update-docs.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/.github/scripts/update-docs.sh -------------------------------------------------------------------------------- /.github/workflows/build_and_test.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/.github/workflows/build_and_test.yml -------------------------------------------------------------------------------- /.github/workflows/publish.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/.github/workflows/publish.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | /target 2 | -------------------------------------------------------------------------------- /Cargo.lock: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/Cargo.lock -------------------------------------------------------------------------------- /Cargo.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/Cargo.toml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/README.md -------------------------------------------------------------------------------- /rust-toolchain.toml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/rust-toolchain.toml -------------------------------------------------------------------------------- /src/lib/color.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/src/lib/color.rs -------------------------------------------------------------------------------- /src/lib/matcher.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/src/lib/matcher.rs -------------------------------------------------------------------------------- /src/lib/mod.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/src/lib/mod.rs -------------------------------------------------------------------------------- /src/lib/seq_io.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/src/lib/seq_io.rs -------------------------------------------------------------------------------- /src/main.rs: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/fulcrumgenomics/fqgrep/HEAD/src/main.rs --------------------------------------------------------------------------------