├── .gitignore ├── README.md ├── conf ├── cuda.yaml ├── downstream │ ├── btcv │ │ ├── backbone-b.yaml │ │ ├── backbone-l.yaml │ │ ├── data.yaml │ │ ├── fit.yaml │ │ ├── model.yaml │ │ └── test.yaml │ └── chaos │ │ ├── backbone-b.yaml │ │ ├── backbone-l.yaml │ │ ├── data.yaml │ │ ├── fit.yaml │ │ ├── model.yaml │ │ └── predict.yaml ├── model │ ├── data.yaml │ ├── eva02-b-ckpt.yaml │ ├── main.yaml │ ├── mim-b.yaml │ ├── mim-l.yaml │ ├── model.yaml │ ├── vit-b.yaml │ └── vit-l.yaml ├── tokenizer-pl.yaml └── tokenizer │ ├── simple │ ├── data.yaml │ ├── loss.yaml │ ├── main-sharpen.yaml │ ├── main.yaml │ ├── model.yaml │ └── pre-trained.yaml │ └── vqvae │ ├── data.yaml │ ├── main-continue.yaml │ ├── main-gan.yaml │ ├── main.yaml │ ├── model.yaml │ └── pre-trained.yaml ├── create-env.zsh ├── downstream ├── .gitignore ├── __init__.py ├── btcv │ ├── __init__.py │ ├── data.py │ └── model.py ├── chaos │ ├── .gitignore │ ├── CHAOS_submission_template_new.zip │ ├── __init__.py │ ├── data.py │ └── model.py └── medmnistv2 │ ├── batch-eval-medmnist-pumit.py │ └── eval-medmnist.py ├── environment.yaml ├── monai ├── README.md ├── __init__.py ├── _extensions │ ├── __init__.py │ ├── gmm │ │ ├── gmm.cpp │ │ ├── gmm.h │ │ ├── gmm_cpu.cpp │ │ ├── gmm_cuda.cu │ │ └── gmm_cuda_linalg.cuh │ └── loader.py ├── _version.py ├── apps │ ├── __init__.py │ ├── auto3dseg │ │ ├── __init__.py │ │ ├── __main__.py │ │ ├── auto_runner.py │ │ ├── bundle_gen.py │ │ ├── data_analyzer.py │ │ ├── ensemble_builder.py │ │ ├── hpo_gen.py │ │ ├── transforms.py │ │ └── utils.py │ ├── datasets.py │ ├── deepedit │ │ ├── __init__.py │ │ ├── interaction.py │ │ └── transforms.py │ ├── deepgrow │ │ ├── __init__.py │ │ ├── dataset.py │ │ ├── interaction.py │ │ └── transforms.py │ ├── detection │ │ ├── __init__.py │ │ ├── metrics │ │ │ ├── __init__.py │ │ │ ├── coco.py │ │ │ └── matching.py │ │ ├── networks │ │ │ ├── __init__.py │ │ │ ├── retinanet_detector.py │ │ │ └── retinanet_network.py │ │ ├── transforms │ │ │ ├── __init__.py │ │ │ ├── array.py │ │ │ ├── box_ops.py │ │ │ └── dictionary.py │ │ └── utils │ │ │ ├── ATSS_matcher.py │ │ │ ├── __init__.py │ │ │ ├── anchor_utils.py │ │ │ ├── box_coder.py │ │ │ ├── box_selector.py │ │ │ ├── detector_utils.py │ │ │ ├── hard_negative_sampler.py │ │ │ └── predict_utils.py │ ├── mmars │ │ ├── __init__.py │ │ ├── mmars.py │ │ └── model_desc.py │ ├── nnunet │ │ ├── __init__.py │ │ ├── __main__.py │ │ ├── nnunetv2_runner.py │ │ └── utils.py │ ├── nuclick │ │ ├── __init__.py │ │ └── transforms.py │ ├── pathology │ │ ├── __init__.py │ │ ├── engines │ │ │ ├── __init__.py │ │ │ └── utils.py │ │ ├── handlers │ │ │ ├── __init__.py │ │ │ └── utils.py │ │ ├── inferers │ │ │ ├── __init__.py │ │ │ └── inferer.py │ │ ├── losses │ │ │ ├── __init__.py │ │ │ └── hovernet_loss.py │ │ ├── metrics │ │ │ ├── __init__.py │ │ │ └── lesion_froc.py │ │ ├── transforms │ │ │ ├── __init__.py │ │ │ ├── post │ │ │ │ ├── __init__.py │ │ │ │ ├── array.py │ │ │ │ └── dictionary.py │ │ │ └── stain │ │ │ │ ├── __init__.py │ │ │ │ ├── array.py │ │ │ │ └── dictionary.py │ │ └── utils.py │ ├── reconstruction │ │ ├── __init__.py │ │ ├── complex_utils.py │ │ ├── fastmri_reader.py │ │ ├── mri_utils.py │ │ ├── networks │ │ │ ├── __init__.py │ │ │ ├── blocks │ │ │ │ ├── __init__.py │ │ │ │ └── varnetblock.py │ │ │ └── nets │ │ │ │ ├── __init__.py │ │ │ │ ├── coil_sensitivity_model.py │ │ │ │ ├── complex_unet.py │ │ │ │ ├── utils.py │ │ │ │ └── varnet.py │ │ └── transforms │ │ │ ├── __init__.py │ │ │ ├── array.py │ │ │ └── dictionary.py │ ├── tcia │ │ ├── __init__.py │ │ ├── label_desc.py │ │ └── utils.py │ └── utils.py ├── auto3dseg │ ├── __init__.py │ ├── algo_gen.py │ ├── analyzer.py │ ├── operations.py │ ├── seg_summarizer.py │ └── utils.py ├── bundle │ ├── __init__.py │ ├── __main__.py │ ├── config_item.py │ ├── config_parser.py │ ├── properties.py │ ├── reference_resolver.py │ ├── scripts.py │ ├── utils.py │ └── workflows.py ├── config │ ├── __init__.py │ ├── deviceconfig.py │ └── type_definitions.py ├── csrc │ ├── ext.cpp │ ├── filtering │ │ ├── bilateral │ │ │ ├── bilateral.cpp │ │ │ ├── bilateral.h │ │ │ ├── bilateralfilter_cpu.cpp │ │ │ ├── bilateralfilter_cpu_phl.cpp │ │ │ ├── bilateralfilter_cuda.cu │ │ │ └── bilateralfilter_cuda_phl.cu │ │ ├── filtering.h │ │ ├── permutohedral │ │ │ ├── hash_table.cuh │ │ │ ├── permutohedral.cpp │ │ │ ├── permutohedral.h │ │ │ ├── permutohedral_cpu.cpp │ │ │ └── permutohedral_cuda.cu │ │ ├── trainable_bilateral │ │ │ ├── bf_layer_cpu_backward.cpp │ │ │ ├── bf_layer_cpu_forward.cpp │ │ │ ├── bf_layer_gpu_backward.cu │ │ │ ├── bf_layer_gpu_forward.cu │ │ │ ├── trainable_bilateral.cpp │ │ │ └── trainable_bilateral.h │ │ └── trainable_joint_bilateral │ │ │ ├── jbf_layer_cpu_backward.cpp │ │ │ ├── jbf_layer_cpu_forward.cpp │ │ │ ├── jbf_layer_gpu_backward.cu │ │ │ ├── jbf_layer_gpu_forward.cu │ │ │ ├── trainable_joint_bilateral.cpp │ │ │ └── trainable_joint_bilateral.h │ ├── lltm │ │ ├── lltm.h │ │ ├── lltm_cpu.cpp │ │ └── lltm_cuda.cu │ ├── resample │ │ ├── bounds_common.h │ │ ├── interpolation_common.h │ │ ├── pushpull.h │ │ ├── pushpull_cpu.cpp │ │ └── pushpull_cuda.cu │ └── utils │ │ ├── common_utils.h │ │ ├── meta_macros.h │ │ ├── resample_utils.h │ │ ├── tensor_description.h │ │ └── tensor_indexing.h ├── data │ ├── __init__.py │ ├── box_utils.py │ ├── csv_saver.py │ ├── dataloader.py │ ├── dataset.py │ ├── dataset_summary.py │ ├── decathlon_datalist.py │ ├── fft_utils.py │ ├── folder_layout.py │ ├── grid_dataset.py │ ├── image_dataset.py │ ├── image_reader.py │ ├── image_writer.py │ ├── iterable_dataset.py │ ├── itk_torch_bridge.py │ ├── meta_obj.py │ ├── meta_tensor.py │ ├── samplers.py │ ├── synthetic.py │ ├── test_time_augmentation.py │ ├── thread_buffer.py │ ├── torchscript_utils.py │ ├── ultrasound_confidence_map.py │ ├── utils.py │ ├── video_dataset.py │ ├── wsi_datasets.py │ └── wsi_reader.py ├── engines │ ├── __init__.py │ ├── evaluator.py │ ├── multi_gpu_supervised_trainer.py │ ├── trainer.py │ ├── utils.py │ └── workflow.py ├── fl │ ├── __init__.py │ ├── client │ │ ├── __init__.py │ │ ├── client_algo.py │ │ └── monai_algo.py │ └── utils │ │ ├── __init__.py │ │ ├── constants.py │ │ ├── exchange_object.py │ │ └── filters.py ├── handlers │ ├── __init__.py │ ├── checkpoint_loader.py │ ├── checkpoint_saver.py │ ├── classification_saver.py │ ├── clearml_handlers.py │ ├── confusion_matrix.py │ ├── decollate_batch.py │ ├── earlystop_handler.py │ ├── garbage_collector.py │ ├── hausdorff_distance.py │ ├── ignite_metric.py │ ├── logfile_handler.py │ ├── lr_schedule_handler.py │ ├── mean_dice.py │ ├── mean_iou.py │ ├── metric_logger.py │ ├── metrics_reloaded_handler.py │ ├── metrics_saver.py │ ├── mlflow_handler.py │ ├── nvtx_handlers.py │ ├── panoptic_quality.py │ ├── parameter_scheduler.py │ ├── postprocessing.py │ ├── probability_maps.py │ ├── regression_metrics.py │ ├── roc_auc.py │ ├── smartcache_handler.py │ ├── stats_handler.py │ ├── surface_distance.py │ ├── tensorboard_handlers.py │ ├── utils.py │ └── validation_handler.py ├── inferers │ ├── __init__.py │ ├── inferer.py │ ├── merger.py │ ├── splitter.py │ └── utils.py ├── losses │ ├── __init__.py │ ├── adversarial_loss.py │ ├── cldice.py │ ├── contrastive.py │ ├── deform.py │ ├── dice.py │ ├── ds_loss.py │ ├── focal_loss.py │ ├── giou_loss.py │ ├── image_dissimilarity.py │ ├── multi_scale.py │ ├── perceptual.py │ ├── spatial_mask.py │ ├── spectral_loss.py │ ├── ssim_loss.py │ ├── tversky.py │ └── unified_focal_loss.py ├── metrics │ ├── __init__.py │ ├── active_learning_metrics.py │ ├── confusion_matrix.py │ ├── cumulative_average.py │ ├── f_beta_score.py │ ├── froc.py │ ├── generalized_dice.py │ ├── hausdorff_distance.py │ ├── loss_metric.py │ ├── meandice.py │ ├── meaniou.py │ ├── metric.py │ ├── panoptic_quality.py │ ├── regression.py │ ├── rocauc.py │ ├── surface_dice.py │ ├── surface_distance.py │ ├── utils.py │ └── wrapper.py ├── networks │ ├── __init__.py │ ├── blocks │ │ ├── __init__.py │ │ ├── acti_norm.py │ │ ├── activation.py │ │ ├── aspp.py │ │ ├── backbone_fpn_utils.py │ │ ├── convolutions.py │ │ ├── crf.py │ │ ├── denseblock.py │ │ ├── dints_block.py │ │ ├── downsample.py │ │ ├── dynunet_block.py │ │ ├── encoder.py │ │ ├── fcn.py │ │ ├── feature_pyramid_network.py │ │ ├── fft_utils_t.py │ │ ├── localnet_block.py │ │ ├── mlp.py │ │ ├── patchembedding.py │ │ ├── regunet_block.py │ │ ├── segresnet_block.py │ │ ├── selfattention.py │ │ ├── squeeze_and_excitation.py │ │ ├── text_embedding.py │ │ ├── transformerblock.py │ │ ├── unetr_block.py │ │ ├── upsample.py │ │ └── warp.py │ ├── layers │ │ ├── __init__.py │ │ ├── convutils.py │ │ ├── drop_path.py │ │ ├── factories.py │ │ ├── filtering.py │ │ ├── gmm.py │ │ ├── simplelayers.py │ │ ├── spatial_transforms.py │ │ ├── utils.py │ │ └── weight_init.py │ ├── nets │ │ ├── __init__.py │ │ ├── ahnet.py │ │ ├── attentionunet.py │ │ ├── autoencoder.py │ │ ├── basic_unet.py │ │ ├── basic_unetplusplus.py │ │ ├── classifier.py │ │ ├── daf3d.py │ │ ├── densenet.py │ │ ├── dints.py │ │ ├── dynunet.py │ │ ├── efficientnet.py │ │ ├── flexible_unet.py │ │ ├── fullyconnectednet.py │ │ ├── generator.py │ │ ├── highresnet.py │ │ ├── hovernet.py │ │ ├── milmodel.py │ │ ├── netadapter.py │ │ ├── quicknat.py │ │ ├── regressor.py │ │ ├── regunet.py │ │ ├── resnet.py │ │ ├── segresnet.py │ │ ├── segresnet_ds.py │ │ ├── senet.py │ │ ├── swin_unetr.py │ │ ├── torchvision_fc.py │ │ ├── transchex.py │ │ ├── unet.py │ │ ├── unetr.py │ │ ├── varautoencoder.py │ │ ├── vit.py │ │ ├── vitautoenc.py │ │ └── vnet.py │ └── utils.py ├── optimizers │ ├── __init__.py │ ├── lr_finder.py │ ├── lr_scheduler.py │ ├── novograd.py │ └── utils.py ├── py.typed ├── transforms │ ├── __init__.py │ ├── adaptors.py │ ├── compose.py │ ├── croppad │ │ ├── __init__.py │ │ ├── array.py │ │ ├── batch.py │ │ ├── dictionary.py │ │ └── functional.py │ ├── intensity │ │ ├── __init__.py │ │ ├── array.py │ │ └── dictionary.py │ ├── inverse.py │ ├── inverse_batch_transform.py │ ├── io │ │ ├── __init__.py │ │ ├── array.py │ │ └── dictionary.py │ ├── lazy │ │ ├── __init__.py │ │ ├── array.py │ │ ├── dictionary.py │ │ ├── functional.py │ │ └── utils.py │ ├── meta_utility │ │ ├── __init__.py │ │ └── dictionary.py │ ├── nvtx.py │ ├── post │ │ ├── __init__.py │ │ ├── array.py │ │ └── dictionary.py │ ├── signal │ │ ├── __init__.py │ │ └── array.py │ ├── smooth_field │ │ ├── __init__.py │ │ ├── array.py │ │ └── dictionary.py │ ├── spatial │ │ ├── __init__.py │ │ ├── array.py │ │ ├── dictionary.py │ │ └── functional.py │ ├── traits.py │ ├── transform.py │ ├── utility │ │ ├── __init__.py │ │ ├── array.py │ │ └── dictionary.py │ ├── utils.py │ ├── utils_create_transform_ims.py │ └── utils_pytorch_numpy_unification.py ├── utils │ ├── __init__.py │ ├── aliases.py │ ├── decorators.py │ ├── deprecate_utils.py │ ├── dist.py │ ├── enums.py │ ├── jupyter_utils.py │ ├── misc.py │ ├── module.py │ ├── nvtx.py │ ├── profiling.py │ ├── state_cacher.py │ ├── tf32.py │ └── type_conversion.py └── visualize │ ├── __init__.py │ ├── class_activation_maps.py │ ├── gradient_based.py │ ├── img2tensorboard.py │ ├── occlusion_sensitivity.py │ ├── utils.py │ └── visualizer.py ├── mylib ├── __init__.py ├── _scheduler.py ├── conf │ ├── __init__.py │ ├── base.py │ ├── mask2former.py │ └── utils.py ├── datamodule │ ├── __init__.py │ ├── base.py │ ├── cls_dm.py │ ├── cv.py │ ├── seg.py │ └── transforms.py ├── metrics.py ├── models │ ├── __init__.py │ ├── adaptive_resampling.py │ ├── backbones │ │ ├── __init__.py │ │ ├── swin │ │ │ ├── __init__.py │ │ │ ├── common3d.py │ │ │ ├── swin3d-conv.py │ │ │ ├── swin3d.py │ │ │ └── swin_monai.py │ │ └── unet.py │ ├── blocks.py │ ├── decoders │ │ ├── __init__.py │ │ ├── full_res.py │ │ ├── msdeform.py │ │ ├── plain_conv_unet.py │ │ ├── swin_unetr_decoder.py │ │ └── uper.py │ ├── init.py │ ├── layers │ │ ├── __init__.py │ │ ├── factories.py │ │ └── position_embedding.py │ ├── lightning │ │ ├── __init__.py │ │ ├── cls_model.py │ │ ├── mask2former.py │ │ ├── model_base.py │ │ └── seg_model.py │ ├── transformer_decoder │ │ ├── __init__.py │ │ └── masked_attention.py │ └── utils.py ├── optim │ ├── __init__.py │ └── factory.py ├── plugins.py ├── reader.py ├── scheduler │ ├── __init__.py │ └── factory.py ├── transforms │ ├── __init__.py │ ├── intensity │ │ ├── __init__.py │ │ ├── adjust_contrast.py │ │ ├── clamp.py │ │ ├── foreground_mask.py │ │ ├── gamma_correction.py │ │ └── stats.py │ ├── io.py │ ├── spatial │ │ ├── __init__.py │ │ ├── affine_crop.py │ │ ├── affine_orientation.py │ │ ├── center_crop.py │ │ ├── simulate_low_res.py │ │ └── square_pad.py │ └── utils.py ├── types.py └── utils │ ├── __init__.py │ ├── enums.py │ ├── grad.py │ ├── index_tracker.py │ └── lightning.py ├── pumit ├── __init__.py ├── datamodule.py ├── model │ ├── __init__.py │ ├── adapter.py │ ├── mim.py │ ├── rope.py │ └── vit.py ├── optim.py ├── reader.py ├── sac.py ├── tokenizer │ ├── __init__.py │ ├── base.py │ ├── discriminator.py │ ├── loss.py │ ├── lpips.py │ ├── quantize.py │ ├── simple.py │ ├── vgg.pth │ └── vqvae.py └── transforms.py └── scripts ├── data ├── check-path.py ├── check-shape.py ├── check-spacing.py ├── normalize.py ├── process.py └── sum.py ├── downstream ├── btcv │ ├── eva02-b.zsh │ ├── eval.py │ ├── main.py │ ├── nnunet-convert.py │ ├── pumit-b.zsh │ ├── scratch-b.zsh │ └── test-b.zsh ├── chaos │ ├── eva02-b.zsh │ ├── main.py │ ├── nnunet-convert.py │ ├── predict-b.zsh │ ├── preprocess.py │ ├── pumit-b.zsh │ ├── scratch-b.zsh │ └── submit.py └── medmnistv2 │ ├── batch-eval-medmnist-eva02-b.py │ ├── batch-eval-medmnist-pumit.py │ ├── batch-eval-medmnist-smit.py │ ├── batch-eval-medmnist-unimiss.py │ └── eval-medmnist.py ├── model ├── main.py ├── mim-b.zsh └── mim-l.zsh └── tokenizer ├── eval.py ├── main.py ├── reconstruct-2d.py ├── reconstruct-3d.py ├── sharpen.zsh ├── shift-weights.py ├── simple-gumbel.zsh ├── simple-soft.zsh └── visualize.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/.gitignore -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/README.md -------------------------------------------------------------------------------- /conf/cuda.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/cuda.yaml -------------------------------------------------------------------------------- /conf/downstream/btcv/backbone-b.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/btcv/backbone-b.yaml -------------------------------------------------------------------------------- /conf/downstream/btcv/backbone-l.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/btcv/backbone-l.yaml -------------------------------------------------------------------------------- /conf/downstream/btcv/data.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/btcv/data.yaml -------------------------------------------------------------------------------- /conf/downstream/btcv/fit.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/btcv/fit.yaml -------------------------------------------------------------------------------- /conf/downstream/btcv/model.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/btcv/model.yaml -------------------------------------------------------------------------------- /conf/downstream/btcv/test.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/btcv/test.yaml -------------------------------------------------------------------------------- /conf/downstream/chaos/backbone-b.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/chaos/backbone-b.yaml -------------------------------------------------------------------------------- /conf/downstream/chaos/backbone-l.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/chaos/backbone-l.yaml -------------------------------------------------------------------------------- /conf/downstream/chaos/data.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/chaos/data.yaml -------------------------------------------------------------------------------- /conf/downstream/chaos/fit.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/chaos/fit.yaml -------------------------------------------------------------------------------- /conf/downstream/chaos/model.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/chaos/model.yaml -------------------------------------------------------------------------------- /conf/downstream/chaos/predict.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/downstream/chaos/predict.yaml -------------------------------------------------------------------------------- /conf/model/data.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/model/data.yaml -------------------------------------------------------------------------------- /conf/model/eva02-b-ckpt.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/model/eva02-b-ckpt.yaml -------------------------------------------------------------------------------- /conf/model/main.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/model/main.yaml -------------------------------------------------------------------------------- /conf/model/mim-b.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/model/mim-b.yaml -------------------------------------------------------------------------------- /conf/model/mim-l.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/model/mim-l.yaml -------------------------------------------------------------------------------- /conf/model/model.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/model/model.yaml -------------------------------------------------------------------------------- /conf/model/vit-b.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/model/vit-b.yaml -------------------------------------------------------------------------------- /conf/model/vit-l.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/model/vit-l.yaml -------------------------------------------------------------------------------- /conf/tokenizer-pl.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer-pl.yaml -------------------------------------------------------------------------------- /conf/tokenizer/simple/data.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/simple/data.yaml -------------------------------------------------------------------------------- /conf/tokenizer/simple/loss.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/simple/loss.yaml -------------------------------------------------------------------------------- /conf/tokenizer/simple/main-sharpen.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/simple/main-sharpen.yaml -------------------------------------------------------------------------------- /conf/tokenizer/simple/main.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/simple/main.yaml -------------------------------------------------------------------------------- /conf/tokenizer/simple/model.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/simple/model.yaml -------------------------------------------------------------------------------- /conf/tokenizer/simple/pre-trained.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/simple/pre-trained.yaml -------------------------------------------------------------------------------- /conf/tokenizer/vqvae/data.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/vqvae/data.yaml -------------------------------------------------------------------------------- /conf/tokenizer/vqvae/main-continue.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/vqvae/main-continue.yaml -------------------------------------------------------------------------------- /conf/tokenizer/vqvae/main-gan.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/vqvae/main-gan.yaml -------------------------------------------------------------------------------- /conf/tokenizer/vqvae/main.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/vqvae/main.yaml -------------------------------------------------------------------------------- /conf/tokenizer/vqvae/model.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/vqvae/model.yaml -------------------------------------------------------------------------------- /conf/tokenizer/vqvae/pre-trained.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/conf/tokenizer/vqvae/pre-trained.yaml -------------------------------------------------------------------------------- /create-env.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/create-env.zsh -------------------------------------------------------------------------------- /downstream/.gitignore: -------------------------------------------------------------------------------- 1 | data 2 | -------------------------------------------------------------------------------- /downstream/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /downstream/btcv/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/downstream/btcv/__init__.py -------------------------------------------------------------------------------- /downstream/btcv/data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/downstream/btcv/data.py -------------------------------------------------------------------------------- /downstream/btcv/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/downstream/btcv/model.py -------------------------------------------------------------------------------- /downstream/chaos/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/downstream/chaos/.gitignore -------------------------------------------------------------------------------- /downstream/chaos/CHAOS_submission_template_new.zip: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/downstream/chaos/CHAOS_submission_template_new.zip -------------------------------------------------------------------------------- /downstream/chaos/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/downstream/chaos/__init__.py -------------------------------------------------------------------------------- /downstream/chaos/data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/downstream/chaos/data.py -------------------------------------------------------------------------------- /downstream/chaos/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/downstream/chaos/model.py -------------------------------------------------------------------------------- /downstream/medmnistv2/batch-eval-medmnist-pumit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/downstream/medmnistv2/batch-eval-medmnist-pumit.py -------------------------------------------------------------------------------- /downstream/medmnistv2/eval-medmnist.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/downstream/medmnistv2/eval-medmnist.py -------------------------------------------------------------------------------- /environment.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/environment.yaml -------------------------------------------------------------------------------- /monai/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/README.md -------------------------------------------------------------------------------- /monai/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/__init__.py -------------------------------------------------------------------------------- /monai/_extensions/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/_extensions/__init__.py -------------------------------------------------------------------------------- /monai/_extensions/gmm/gmm.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/_extensions/gmm/gmm.cpp -------------------------------------------------------------------------------- /monai/_extensions/gmm/gmm.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/_extensions/gmm/gmm.h -------------------------------------------------------------------------------- /monai/_extensions/gmm/gmm_cpu.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/_extensions/gmm/gmm_cpu.cpp -------------------------------------------------------------------------------- /monai/_extensions/gmm/gmm_cuda.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/_extensions/gmm/gmm_cuda.cu -------------------------------------------------------------------------------- /monai/_extensions/gmm/gmm_cuda_linalg.cuh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/_extensions/gmm/gmm_cuda_linalg.cuh -------------------------------------------------------------------------------- /monai/_extensions/loader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/_extensions/loader.py -------------------------------------------------------------------------------- /monai/_version.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/_version.py -------------------------------------------------------------------------------- /monai/apps/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/__init__.py -------------------------------------------------------------------------------- /monai/apps/auto3dseg/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/auto3dseg/__init__.py -------------------------------------------------------------------------------- /monai/apps/auto3dseg/__main__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/auto3dseg/__main__.py -------------------------------------------------------------------------------- /monai/apps/auto3dseg/auto_runner.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/auto3dseg/auto_runner.py -------------------------------------------------------------------------------- /monai/apps/auto3dseg/bundle_gen.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/auto3dseg/bundle_gen.py -------------------------------------------------------------------------------- /monai/apps/auto3dseg/data_analyzer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/auto3dseg/data_analyzer.py -------------------------------------------------------------------------------- /monai/apps/auto3dseg/ensemble_builder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/auto3dseg/ensemble_builder.py -------------------------------------------------------------------------------- /monai/apps/auto3dseg/hpo_gen.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/auto3dseg/hpo_gen.py -------------------------------------------------------------------------------- /monai/apps/auto3dseg/transforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/auto3dseg/transforms.py -------------------------------------------------------------------------------- /monai/apps/auto3dseg/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/auto3dseg/utils.py -------------------------------------------------------------------------------- /monai/apps/datasets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/datasets.py -------------------------------------------------------------------------------- /monai/apps/deepedit/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/deepedit/__init__.py -------------------------------------------------------------------------------- /monai/apps/deepedit/interaction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/deepedit/interaction.py -------------------------------------------------------------------------------- /monai/apps/deepedit/transforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/deepedit/transforms.py -------------------------------------------------------------------------------- /monai/apps/deepgrow/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/deepgrow/__init__.py -------------------------------------------------------------------------------- /monai/apps/deepgrow/dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/deepgrow/dataset.py -------------------------------------------------------------------------------- /monai/apps/deepgrow/interaction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/deepgrow/interaction.py -------------------------------------------------------------------------------- /monai/apps/deepgrow/transforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/deepgrow/transforms.py -------------------------------------------------------------------------------- /monai/apps/detection/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/__init__.py -------------------------------------------------------------------------------- /monai/apps/detection/metrics/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/metrics/__init__.py -------------------------------------------------------------------------------- /monai/apps/detection/metrics/coco.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/metrics/coco.py -------------------------------------------------------------------------------- /monai/apps/detection/metrics/matching.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/metrics/matching.py -------------------------------------------------------------------------------- /monai/apps/detection/networks/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/networks/__init__.py -------------------------------------------------------------------------------- /monai/apps/detection/networks/retinanet_detector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/networks/retinanet_detector.py -------------------------------------------------------------------------------- /monai/apps/detection/networks/retinanet_network.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/networks/retinanet_network.py -------------------------------------------------------------------------------- /monai/apps/detection/transforms/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/transforms/__init__.py -------------------------------------------------------------------------------- /monai/apps/detection/transforms/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/transforms/array.py -------------------------------------------------------------------------------- /monai/apps/detection/transforms/box_ops.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/transforms/box_ops.py -------------------------------------------------------------------------------- /monai/apps/detection/transforms/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/transforms/dictionary.py -------------------------------------------------------------------------------- /monai/apps/detection/utils/ATSS_matcher.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/utils/ATSS_matcher.py -------------------------------------------------------------------------------- /monai/apps/detection/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/utils/__init__.py -------------------------------------------------------------------------------- /monai/apps/detection/utils/anchor_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/utils/anchor_utils.py -------------------------------------------------------------------------------- /monai/apps/detection/utils/box_coder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/utils/box_coder.py -------------------------------------------------------------------------------- /monai/apps/detection/utils/box_selector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/utils/box_selector.py -------------------------------------------------------------------------------- /monai/apps/detection/utils/detector_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/utils/detector_utils.py -------------------------------------------------------------------------------- /monai/apps/detection/utils/hard_negative_sampler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/utils/hard_negative_sampler.py -------------------------------------------------------------------------------- /monai/apps/detection/utils/predict_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/detection/utils/predict_utils.py -------------------------------------------------------------------------------- /monai/apps/mmars/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/mmars/__init__.py -------------------------------------------------------------------------------- /monai/apps/mmars/mmars.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/mmars/mmars.py -------------------------------------------------------------------------------- /monai/apps/mmars/model_desc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/mmars/model_desc.py -------------------------------------------------------------------------------- /monai/apps/nnunet/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/nnunet/__init__.py -------------------------------------------------------------------------------- /monai/apps/nnunet/__main__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/nnunet/__main__.py -------------------------------------------------------------------------------- /monai/apps/nnunet/nnunetv2_runner.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/nnunet/nnunetv2_runner.py -------------------------------------------------------------------------------- /monai/apps/nnunet/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/nnunet/utils.py -------------------------------------------------------------------------------- /monai/apps/nuclick/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/nuclick/__init__.py -------------------------------------------------------------------------------- /monai/apps/nuclick/transforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/nuclick/transforms.py -------------------------------------------------------------------------------- /monai/apps/pathology/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/__init__.py -------------------------------------------------------------------------------- /monai/apps/pathology/engines/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/engines/__init__.py -------------------------------------------------------------------------------- /monai/apps/pathology/engines/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/engines/utils.py -------------------------------------------------------------------------------- /monai/apps/pathology/handlers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/handlers/__init__.py -------------------------------------------------------------------------------- /monai/apps/pathology/handlers/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/handlers/utils.py -------------------------------------------------------------------------------- /monai/apps/pathology/inferers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/inferers/__init__.py -------------------------------------------------------------------------------- /monai/apps/pathology/inferers/inferer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/inferers/inferer.py -------------------------------------------------------------------------------- /monai/apps/pathology/losses/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/losses/__init__.py -------------------------------------------------------------------------------- /monai/apps/pathology/losses/hovernet_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/losses/hovernet_loss.py -------------------------------------------------------------------------------- /monai/apps/pathology/metrics/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/metrics/__init__.py -------------------------------------------------------------------------------- /monai/apps/pathology/metrics/lesion_froc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/metrics/lesion_froc.py -------------------------------------------------------------------------------- /monai/apps/pathology/transforms/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/transforms/__init__.py -------------------------------------------------------------------------------- /monai/apps/pathology/transforms/post/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/transforms/post/__init__.py -------------------------------------------------------------------------------- /monai/apps/pathology/transforms/post/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/transforms/post/array.py -------------------------------------------------------------------------------- /monai/apps/pathology/transforms/post/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/transforms/post/dictionary.py -------------------------------------------------------------------------------- /monai/apps/pathology/transforms/stain/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/transforms/stain/__init__.py -------------------------------------------------------------------------------- /monai/apps/pathology/transforms/stain/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/transforms/stain/array.py -------------------------------------------------------------------------------- /monai/apps/pathology/transforms/stain/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/transforms/stain/dictionary.py -------------------------------------------------------------------------------- /monai/apps/pathology/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/pathology/utils.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/__init__.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/complex_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/complex_utils.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/fastmri_reader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/fastmri_reader.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/mri_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/mri_utils.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/networks/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/networks/__init__.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/networks/blocks/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/networks/blocks/__init__.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/networks/blocks/varnetblock.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/networks/blocks/varnetblock.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/networks/nets/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/networks/nets/__init__.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/networks/nets/coil_sensitivity_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/networks/nets/coil_sensitivity_model.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/networks/nets/complex_unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/networks/nets/complex_unet.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/networks/nets/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/networks/nets/utils.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/networks/nets/varnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/networks/nets/varnet.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/transforms/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/transforms/__init__.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/transforms/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/transforms/array.py -------------------------------------------------------------------------------- /monai/apps/reconstruction/transforms/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/reconstruction/transforms/dictionary.py -------------------------------------------------------------------------------- /monai/apps/tcia/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/tcia/__init__.py -------------------------------------------------------------------------------- /monai/apps/tcia/label_desc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/tcia/label_desc.py -------------------------------------------------------------------------------- /monai/apps/tcia/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/tcia/utils.py -------------------------------------------------------------------------------- /monai/apps/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/apps/utils.py -------------------------------------------------------------------------------- /monai/auto3dseg/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/auto3dseg/__init__.py -------------------------------------------------------------------------------- /monai/auto3dseg/algo_gen.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/auto3dseg/algo_gen.py -------------------------------------------------------------------------------- /monai/auto3dseg/analyzer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/auto3dseg/analyzer.py -------------------------------------------------------------------------------- /monai/auto3dseg/operations.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/auto3dseg/operations.py -------------------------------------------------------------------------------- /monai/auto3dseg/seg_summarizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/auto3dseg/seg_summarizer.py -------------------------------------------------------------------------------- /monai/auto3dseg/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/auto3dseg/utils.py -------------------------------------------------------------------------------- /monai/bundle/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/bundle/__init__.py -------------------------------------------------------------------------------- /monai/bundle/__main__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/bundle/__main__.py -------------------------------------------------------------------------------- /monai/bundle/config_item.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/bundle/config_item.py -------------------------------------------------------------------------------- /monai/bundle/config_parser.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/bundle/config_parser.py -------------------------------------------------------------------------------- /monai/bundle/properties.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/bundle/properties.py -------------------------------------------------------------------------------- /monai/bundle/reference_resolver.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/bundle/reference_resolver.py -------------------------------------------------------------------------------- /monai/bundle/scripts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/bundle/scripts.py -------------------------------------------------------------------------------- /monai/bundle/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/bundle/utils.py -------------------------------------------------------------------------------- /monai/bundle/workflows.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/bundle/workflows.py -------------------------------------------------------------------------------- /monai/config/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/config/__init__.py -------------------------------------------------------------------------------- /monai/config/deviceconfig.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/config/deviceconfig.py -------------------------------------------------------------------------------- /monai/config/type_definitions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/config/type_definitions.py -------------------------------------------------------------------------------- /monai/csrc/ext.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/ext.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/bilateral/bilateral.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/bilateral/bilateral.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/bilateral/bilateral.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/bilateral/bilateral.h -------------------------------------------------------------------------------- /monai/csrc/filtering/bilateral/bilateralfilter_cpu.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/bilateral/bilateralfilter_cpu.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/bilateral/bilateralfilter_cpu_phl.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/bilateral/bilateralfilter_cpu_phl.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/bilateral/bilateralfilter_cuda.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/bilateral/bilateralfilter_cuda.cu -------------------------------------------------------------------------------- /monai/csrc/filtering/bilateral/bilateralfilter_cuda_phl.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/bilateral/bilateralfilter_cuda_phl.cu -------------------------------------------------------------------------------- /monai/csrc/filtering/filtering.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/filtering.h -------------------------------------------------------------------------------- /monai/csrc/filtering/permutohedral/hash_table.cuh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/permutohedral/hash_table.cuh -------------------------------------------------------------------------------- /monai/csrc/filtering/permutohedral/permutohedral.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/permutohedral/permutohedral.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/permutohedral/permutohedral.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/permutohedral/permutohedral.h -------------------------------------------------------------------------------- /monai/csrc/filtering/permutohedral/permutohedral_cpu.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/permutohedral/permutohedral_cpu.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/permutohedral/permutohedral_cuda.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/permutohedral/permutohedral_cuda.cu -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_bilateral/bf_layer_cpu_backward.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_bilateral/bf_layer_cpu_backward.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_bilateral/bf_layer_cpu_forward.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_bilateral/bf_layer_cpu_forward.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_bilateral/bf_layer_gpu_backward.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_bilateral/bf_layer_gpu_backward.cu -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_bilateral/bf_layer_gpu_forward.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_bilateral/bf_layer_gpu_forward.cu -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_bilateral/trainable_bilateral.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_bilateral/trainable_bilateral.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_bilateral/trainable_bilateral.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_bilateral/trainable_bilateral.h -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_joint_bilateral/jbf_layer_cpu_backward.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_joint_bilateral/jbf_layer_cpu_backward.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_joint_bilateral/jbf_layer_cpu_forward.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_joint_bilateral/jbf_layer_cpu_forward.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_joint_bilateral/jbf_layer_gpu_backward.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_joint_bilateral/jbf_layer_gpu_backward.cu -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_joint_bilateral/jbf_layer_gpu_forward.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_joint_bilateral/jbf_layer_gpu_forward.cu -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_joint_bilateral/trainable_joint_bilateral.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_joint_bilateral/trainable_joint_bilateral.cpp -------------------------------------------------------------------------------- /monai/csrc/filtering/trainable_joint_bilateral/trainable_joint_bilateral.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/filtering/trainable_joint_bilateral/trainable_joint_bilateral.h -------------------------------------------------------------------------------- /monai/csrc/lltm/lltm.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/lltm/lltm.h -------------------------------------------------------------------------------- /monai/csrc/lltm/lltm_cpu.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/lltm/lltm_cpu.cpp -------------------------------------------------------------------------------- /monai/csrc/lltm/lltm_cuda.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/lltm/lltm_cuda.cu -------------------------------------------------------------------------------- /monai/csrc/resample/bounds_common.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/resample/bounds_common.h -------------------------------------------------------------------------------- /monai/csrc/resample/interpolation_common.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/resample/interpolation_common.h -------------------------------------------------------------------------------- /monai/csrc/resample/pushpull.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/resample/pushpull.h -------------------------------------------------------------------------------- /monai/csrc/resample/pushpull_cpu.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/resample/pushpull_cpu.cpp -------------------------------------------------------------------------------- /monai/csrc/resample/pushpull_cuda.cu: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/resample/pushpull_cuda.cu -------------------------------------------------------------------------------- /monai/csrc/utils/common_utils.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/utils/common_utils.h -------------------------------------------------------------------------------- /monai/csrc/utils/meta_macros.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/utils/meta_macros.h -------------------------------------------------------------------------------- /monai/csrc/utils/resample_utils.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/utils/resample_utils.h -------------------------------------------------------------------------------- /monai/csrc/utils/tensor_description.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/utils/tensor_description.h -------------------------------------------------------------------------------- /monai/csrc/utils/tensor_indexing.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/csrc/utils/tensor_indexing.h -------------------------------------------------------------------------------- /monai/data/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/__init__.py -------------------------------------------------------------------------------- /monai/data/box_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/box_utils.py -------------------------------------------------------------------------------- /monai/data/csv_saver.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/csv_saver.py -------------------------------------------------------------------------------- /monai/data/dataloader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/dataloader.py -------------------------------------------------------------------------------- /monai/data/dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/dataset.py -------------------------------------------------------------------------------- /monai/data/dataset_summary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/dataset_summary.py -------------------------------------------------------------------------------- /monai/data/decathlon_datalist.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/decathlon_datalist.py -------------------------------------------------------------------------------- /monai/data/fft_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/fft_utils.py -------------------------------------------------------------------------------- /monai/data/folder_layout.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/folder_layout.py -------------------------------------------------------------------------------- /monai/data/grid_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/grid_dataset.py -------------------------------------------------------------------------------- /monai/data/image_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/image_dataset.py -------------------------------------------------------------------------------- /monai/data/image_reader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/image_reader.py -------------------------------------------------------------------------------- /monai/data/image_writer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/image_writer.py -------------------------------------------------------------------------------- /monai/data/iterable_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/iterable_dataset.py -------------------------------------------------------------------------------- /monai/data/itk_torch_bridge.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/itk_torch_bridge.py -------------------------------------------------------------------------------- /monai/data/meta_obj.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/meta_obj.py -------------------------------------------------------------------------------- /monai/data/meta_tensor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/meta_tensor.py -------------------------------------------------------------------------------- /monai/data/samplers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/samplers.py -------------------------------------------------------------------------------- /monai/data/synthetic.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/synthetic.py -------------------------------------------------------------------------------- /monai/data/test_time_augmentation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/test_time_augmentation.py -------------------------------------------------------------------------------- /monai/data/thread_buffer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/thread_buffer.py -------------------------------------------------------------------------------- /monai/data/torchscript_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/torchscript_utils.py -------------------------------------------------------------------------------- /monai/data/ultrasound_confidence_map.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/ultrasound_confidence_map.py -------------------------------------------------------------------------------- /monai/data/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/utils.py -------------------------------------------------------------------------------- /monai/data/video_dataset.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/video_dataset.py -------------------------------------------------------------------------------- /monai/data/wsi_datasets.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/wsi_datasets.py -------------------------------------------------------------------------------- /monai/data/wsi_reader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/data/wsi_reader.py -------------------------------------------------------------------------------- /monai/engines/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/engines/__init__.py -------------------------------------------------------------------------------- /monai/engines/evaluator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/engines/evaluator.py -------------------------------------------------------------------------------- /monai/engines/multi_gpu_supervised_trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/engines/multi_gpu_supervised_trainer.py -------------------------------------------------------------------------------- /monai/engines/trainer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/engines/trainer.py -------------------------------------------------------------------------------- /monai/engines/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/engines/utils.py -------------------------------------------------------------------------------- /monai/engines/workflow.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/engines/workflow.py -------------------------------------------------------------------------------- /monai/fl/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/fl/__init__.py -------------------------------------------------------------------------------- /monai/fl/client/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/fl/client/__init__.py -------------------------------------------------------------------------------- /monai/fl/client/client_algo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/fl/client/client_algo.py -------------------------------------------------------------------------------- /monai/fl/client/monai_algo.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/fl/client/monai_algo.py -------------------------------------------------------------------------------- /monai/fl/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/fl/utils/__init__.py -------------------------------------------------------------------------------- /monai/fl/utils/constants.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/fl/utils/constants.py -------------------------------------------------------------------------------- /monai/fl/utils/exchange_object.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/fl/utils/exchange_object.py -------------------------------------------------------------------------------- /monai/fl/utils/filters.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/fl/utils/filters.py -------------------------------------------------------------------------------- /monai/handlers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/__init__.py -------------------------------------------------------------------------------- /monai/handlers/checkpoint_loader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/checkpoint_loader.py -------------------------------------------------------------------------------- /monai/handlers/checkpoint_saver.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/checkpoint_saver.py -------------------------------------------------------------------------------- /monai/handlers/classification_saver.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/classification_saver.py -------------------------------------------------------------------------------- /monai/handlers/clearml_handlers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/clearml_handlers.py -------------------------------------------------------------------------------- /monai/handlers/confusion_matrix.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/confusion_matrix.py -------------------------------------------------------------------------------- /monai/handlers/decollate_batch.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/decollate_batch.py -------------------------------------------------------------------------------- /monai/handlers/earlystop_handler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/earlystop_handler.py -------------------------------------------------------------------------------- /monai/handlers/garbage_collector.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/garbage_collector.py -------------------------------------------------------------------------------- /monai/handlers/hausdorff_distance.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/hausdorff_distance.py -------------------------------------------------------------------------------- /monai/handlers/ignite_metric.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/ignite_metric.py -------------------------------------------------------------------------------- /monai/handlers/logfile_handler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/logfile_handler.py -------------------------------------------------------------------------------- /monai/handlers/lr_schedule_handler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/lr_schedule_handler.py -------------------------------------------------------------------------------- /monai/handlers/mean_dice.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/mean_dice.py -------------------------------------------------------------------------------- /monai/handlers/mean_iou.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/mean_iou.py -------------------------------------------------------------------------------- /monai/handlers/metric_logger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/metric_logger.py -------------------------------------------------------------------------------- /monai/handlers/metrics_reloaded_handler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/metrics_reloaded_handler.py -------------------------------------------------------------------------------- /monai/handlers/metrics_saver.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/metrics_saver.py -------------------------------------------------------------------------------- /monai/handlers/mlflow_handler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/mlflow_handler.py -------------------------------------------------------------------------------- /monai/handlers/nvtx_handlers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/nvtx_handlers.py -------------------------------------------------------------------------------- /monai/handlers/panoptic_quality.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/panoptic_quality.py -------------------------------------------------------------------------------- /monai/handlers/parameter_scheduler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/parameter_scheduler.py -------------------------------------------------------------------------------- /monai/handlers/postprocessing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/postprocessing.py -------------------------------------------------------------------------------- /monai/handlers/probability_maps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/probability_maps.py -------------------------------------------------------------------------------- /monai/handlers/regression_metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/regression_metrics.py -------------------------------------------------------------------------------- /monai/handlers/roc_auc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/roc_auc.py -------------------------------------------------------------------------------- /monai/handlers/smartcache_handler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/smartcache_handler.py -------------------------------------------------------------------------------- /monai/handlers/stats_handler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/stats_handler.py -------------------------------------------------------------------------------- /monai/handlers/surface_distance.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/surface_distance.py -------------------------------------------------------------------------------- /monai/handlers/tensorboard_handlers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/tensorboard_handlers.py -------------------------------------------------------------------------------- /monai/handlers/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/utils.py -------------------------------------------------------------------------------- /monai/handlers/validation_handler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/handlers/validation_handler.py -------------------------------------------------------------------------------- /monai/inferers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/inferers/__init__.py -------------------------------------------------------------------------------- /monai/inferers/inferer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/inferers/inferer.py -------------------------------------------------------------------------------- /monai/inferers/merger.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/inferers/merger.py -------------------------------------------------------------------------------- /monai/inferers/splitter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/inferers/splitter.py -------------------------------------------------------------------------------- /monai/inferers/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/inferers/utils.py -------------------------------------------------------------------------------- /monai/losses/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/__init__.py -------------------------------------------------------------------------------- /monai/losses/adversarial_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/adversarial_loss.py -------------------------------------------------------------------------------- /monai/losses/cldice.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/cldice.py -------------------------------------------------------------------------------- /monai/losses/contrastive.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/contrastive.py -------------------------------------------------------------------------------- /monai/losses/deform.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/deform.py -------------------------------------------------------------------------------- /monai/losses/dice.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/dice.py -------------------------------------------------------------------------------- /monai/losses/ds_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/ds_loss.py -------------------------------------------------------------------------------- /monai/losses/focal_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/focal_loss.py -------------------------------------------------------------------------------- /monai/losses/giou_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/giou_loss.py -------------------------------------------------------------------------------- /monai/losses/image_dissimilarity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/image_dissimilarity.py -------------------------------------------------------------------------------- /monai/losses/multi_scale.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/multi_scale.py -------------------------------------------------------------------------------- /monai/losses/perceptual.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/perceptual.py -------------------------------------------------------------------------------- /monai/losses/spatial_mask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/spatial_mask.py -------------------------------------------------------------------------------- /monai/losses/spectral_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/spectral_loss.py -------------------------------------------------------------------------------- /monai/losses/ssim_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/ssim_loss.py -------------------------------------------------------------------------------- /monai/losses/tversky.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/tversky.py -------------------------------------------------------------------------------- /monai/losses/unified_focal_loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/losses/unified_focal_loss.py -------------------------------------------------------------------------------- /monai/metrics/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/__init__.py -------------------------------------------------------------------------------- /monai/metrics/active_learning_metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/active_learning_metrics.py -------------------------------------------------------------------------------- /monai/metrics/confusion_matrix.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/confusion_matrix.py -------------------------------------------------------------------------------- /monai/metrics/cumulative_average.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/cumulative_average.py -------------------------------------------------------------------------------- /monai/metrics/f_beta_score.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/f_beta_score.py -------------------------------------------------------------------------------- /monai/metrics/froc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/froc.py -------------------------------------------------------------------------------- /monai/metrics/generalized_dice.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/generalized_dice.py -------------------------------------------------------------------------------- /monai/metrics/hausdorff_distance.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/hausdorff_distance.py -------------------------------------------------------------------------------- /monai/metrics/loss_metric.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/loss_metric.py -------------------------------------------------------------------------------- /monai/metrics/meandice.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/meandice.py -------------------------------------------------------------------------------- /monai/metrics/meaniou.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/meaniou.py -------------------------------------------------------------------------------- /monai/metrics/metric.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/metric.py -------------------------------------------------------------------------------- /monai/metrics/panoptic_quality.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/panoptic_quality.py -------------------------------------------------------------------------------- /monai/metrics/regression.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/regression.py -------------------------------------------------------------------------------- /monai/metrics/rocauc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/rocauc.py -------------------------------------------------------------------------------- /monai/metrics/surface_dice.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/surface_dice.py -------------------------------------------------------------------------------- /monai/metrics/surface_distance.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/surface_distance.py -------------------------------------------------------------------------------- /monai/metrics/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/utils.py -------------------------------------------------------------------------------- /monai/metrics/wrapper.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/metrics/wrapper.py -------------------------------------------------------------------------------- /monai/networks/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/__init__.py -------------------------------------------------------------------------------- /monai/networks/blocks/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/__init__.py -------------------------------------------------------------------------------- /monai/networks/blocks/acti_norm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/acti_norm.py -------------------------------------------------------------------------------- /monai/networks/blocks/activation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/activation.py -------------------------------------------------------------------------------- /monai/networks/blocks/aspp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/aspp.py -------------------------------------------------------------------------------- /monai/networks/blocks/backbone_fpn_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/backbone_fpn_utils.py -------------------------------------------------------------------------------- /monai/networks/blocks/convolutions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/convolutions.py -------------------------------------------------------------------------------- /monai/networks/blocks/crf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/crf.py -------------------------------------------------------------------------------- /monai/networks/blocks/denseblock.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/denseblock.py -------------------------------------------------------------------------------- /monai/networks/blocks/dints_block.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/dints_block.py -------------------------------------------------------------------------------- /monai/networks/blocks/downsample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/downsample.py -------------------------------------------------------------------------------- /monai/networks/blocks/dynunet_block.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/dynunet_block.py -------------------------------------------------------------------------------- /monai/networks/blocks/encoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/encoder.py -------------------------------------------------------------------------------- /monai/networks/blocks/fcn.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/fcn.py -------------------------------------------------------------------------------- /monai/networks/blocks/feature_pyramid_network.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/feature_pyramid_network.py -------------------------------------------------------------------------------- /monai/networks/blocks/fft_utils_t.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/fft_utils_t.py -------------------------------------------------------------------------------- /monai/networks/blocks/localnet_block.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/localnet_block.py -------------------------------------------------------------------------------- /monai/networks/blocks/mlp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/mlp.py -------------------------------------------------------------------------------- /monai/networks/blocks/patchembedding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/patchembedding.py -------------------------------------------------------------------------------- /monai/networks/blocks/regunet_block.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/regunet_block.py -------------------------------------------------------------------------------- /monai/networks/blocks/segresnet_block.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/segresnet_block.py -------------------------------------------------------------------------------- /monai/networks/blocks/selfattention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/selfattention.py -------------------------------------------------------------------------------- /monai/networks/blocks/squeeze_and_excitation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/squeeze_and_excitation.py -------------------------------------------------------------------------------- /monai/networks/blocks/text_embedding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/text_embedding.py -------------------------------------------------------------------------------- /monai/networks/blocks/transformerblock.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/transformerblock.py -------------------------------------------------------------------------------- /monai/networks/blocks/unetr_block.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/unetr_block.py -------------------------------------------------------------------------------- /monai/networks/blocks/upsample.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/upsample.py -------------------------------------------------------------------------------- /monai/networks/blocks/warp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/blocks/warp.py -------------------------------------------------------------------------------- /monai/networks/layers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/layers/__init__.py -------------------------------------------------------------------------------- /monai/networks/layers/convutils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/layers/convutils.py -------------------------------------------------------------------------------- /monai/networks/layers/drop_path.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/layers/drop_path.py -------------------------------------------------------------------------------- /monai/networks/layers/factories.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/layers/factories.py -------------------------------------------------------------------------------- /monai/networks/layers/filtering.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/layers/filtering.py -------------------------------------------------------------------------------- /monai/networks/layers/gmm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/layers/gmm.py -------------------------------------------------------------------------------- /monai/networks/layers/simplelayers.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/layers/simplelayers.py -------------------------------------------------------------------------------- /monai/networks/layers/spatial_transforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/layers/spatial_transforms.py -------------------------------------------------------------------------------- /monai/networks/layers/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/layers/utils.py -------------------------------------------------------------------------------- /monai/networks/layers/weight_init.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/layers/weight_init.py -------------------------------------------------------------------------------- /monai/networks/nets/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/__init__.py -------------------------------------------------------------------------------- /monai/networks/nets/ahnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/ahnet.py -------------------------------------------------------------------------------- /monai/networks/nets/attentionunet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/attentionunet.py -------------------------------------------------------------------------------- /monai/networks/nets/autoencoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/autoencoder.py -------------------------------------------------------------------------------- /monai/networks/nets/basic_unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/basic_unet.py -------------------------------------------------------------------------------- /monai/networks/nets/basic_unetplusplus.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/basic_unetplusplus.py -------------------------------------------------------------------------------- /monai/networks/nets/classifier.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/classifier.py -------------------------------------------------------------------------------- /monai/networks/nets/daf3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/daf3d.py -------------------------------------------------------------------------------- /monai/networks/nets/densenet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/densenet.py -------------------------------------------------------------------------------- /monai/networks/nets/dints.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/dints.py -------------------------------------------------------------------------------- /monai/networks/nets/dynunet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/dynunet.py -------------------------------------------------------------------------------- /monai/networks/nets/efficientnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/efficientnet.py -------------------------------------------------------------------------------- /monai/networks/nets/flexible_unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/flexible_unet.py -------------------------------------------------------------------------------- /monai/networks/nets/fullyconnectednet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/fullyconnectednet.py -------------------------------------------------------------------------------- /monai/networks/nets/generator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/generator.py -------------------------------------------------------------------------------- /monai/networks/nets/highresnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/highresnet.py -------------------------------------------------------------------------------- /monai/networks/nets/hovernet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/hovernet.py -------------------------------------------------------------------------------- /monai/networks/nets/milmodel.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/milmodel.py -------------------------------------------------------------------------------- /monai/networks/nets/netadapter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/netadapter.py -------------------------------------------------------------------------------- /monai/networks/nets/quicknat.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/quicknat.py -------------------------------------------------------------------------------- /monai/networks/nets/regressor.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/regressor.py -------------------------------------------------------------------------------- /monai/networks/nets/regunet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/regunet.py -------------------------------------------------------------------------------- /monai/networks/nets/resnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/resnet.py -------------------------------------------------------------------------------- /monai/networks/nets/segresnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/segresnet.py -------------------------------------------------------------------------------- /monai/networks/nets/segresnet_ds.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/segresnet_ds.py -------------------------------------------------------------------------------- /monai/networks/nets/senet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/senet.py -------------------------------------------------------------------------------- /monai/networks/nets/swin_unetr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/swin_unetr.py -------------------------------------------------------------------------------- /monai/networks/nets/torchvision_fc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/torchvision_fc.py -------------------------------------------------------------------------------- /monai/networks/nets/transchex.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/transchex.py -------------------------------------------------------------------------------- /monai/networks/nets/unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/unet.py -------------------------------------------------------------------------------- /monai/networks/nets/unetr.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/unetr.py -------------------------------------------------------------------------------- /monai/networks/nets/varautoencoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/varautoencoder.py -------------------------------------------------------------------------------- /monai/networks/nets/vit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/vit.py -------------------------------------------------------------------------------- /monai/networks/nets/vitautoenc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/vitautoenc.py -------------------------------------------------------------------------------- /monai/networks/nets/vnet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/nets/vnet.py -------------------------------------------------------------------------------- /monai/networks/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/networks/utils.py -------------------------------------------------------------------------------- /monai/optimizers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/optimizers/__init__.py -------------------------------------------------------------------------------- /monai/optimizers/lr_finder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/optimizers/lr_finder.py -------------------------------------------------------------------------------- /monai/optimizers/lr_scheduler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/optimizers/lr_scheduler.py -------------------------------------------------------------------------------- /monai/optimizers/novograd.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/optimizers/novograd.py -------------------------------------------------------------------------------- /monai/optimizers/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/optimizers/utils.py -------------------------------------------------------------------------------- /monai/py.typed: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /monai/transforms/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/__init__.py -------------------------------------------------------------------------------- /monai/transforms/adaptors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/adaptors.py -------------------------------------------------------------------------------- /monai/transforms/compose.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/compose.py -------------------------------------------------------------------------------- /monai/transforms/croppad/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/croppad/__init__.py -------------------------------------------------------------------------------- /monai/transforms/croppad/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/croppad/array.py -------------------------------------------------------------------------------- /monai/transforms/croppad/batch.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/croppad/batch.py -------------------------------------------------------------------------------- /monai/transforms/croppad/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/croppad/dictionary.py -------------------------------------------------------------------------------- /monai/transforms/croppad/functional.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/croppad/functional.py -------------------------------------------------------------------------------- /monai/transforms/intensity/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/intensity/__init__.py -------------------------------------------------------------------------------- /monai/transforms/intensity/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/intensity/array.py -------------------------------------------------------------------------------- /monai/transforms/intensity/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/intensity/dictionary.py -------------------------------------------------------------------------------- /monai/transforms/inverse.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/inverse.py -------------------------------------------------------------------------------- /monai/transforms/inverse_batch_transform.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/inverse_batch_transform.py -------------------------------------------------------------------------------- /monai/transforms/io/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/io/__init__.py -------------------------------------------------------------------------------- /monai/transforms/io/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/io/array.py -------------------------------------------------------------------------------- /monai/transforms/io/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/io/dictionary.py -------------------------------------------------------------------------------- /monai/transforms/lazy/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/lazy/__init__.py -------------------------------------------------------------------------------- /monai/transforms/lazy/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/lazy/array.py -------------------------------------------------------------------------------- /monai/transforms/lazy/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/lazy/dictionary.py -------------------------------------------------------------------------------- /monai/transforms/lazy/functional.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/lazy/functional.py -------------------------------------------------------------------------------- /monai/transforms/lazy/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/lazy/utils.py -------------------------------------------------------------------------------- /monai/transforms/meta_utility/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/meta_utility/__init__.py -------------------------------------------------------------------------------- /monai/transforms/meta_utility/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/meta_utility/dictionary.py -------------------------------------------------------------------------------- /monai/transforms/nvtx.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/nvtx.py -------------------------------------------------------------------------------- /monai/transforms/post/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/post/__init__.py -------------------------------------------------------------------------------- /monai/transforms/post/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/post/array.py -------------------------------------------------------------------------------- /monai/transforms/post/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/post/dictionary.py -------------------------------------------------------------------------------- /monai/transforms/signal/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/signal/__init__.py -------------------------------------------------------------------------------- /monai/transforms/signal/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/signal/array.py -------------------------------------------------------------------------------- /monai/transforms/smooth_field/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/smooth_field/__init__.py -------------------------------------------------------------------------------- /monai/transforms/smooth_field/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/smooth_field/array.py -------------------------------------------------------------------------------- /monai/transforms/smooth_field/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/smooth_field/dictionary.py -------------------------------------------------------------------------------- /monai/transforms/spatial/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/spatial/__init__.py -------------------------------------------------------------------------------- /monai/transforms/spatial/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/spatial/array.py -------------------------------------------------------------------------------- /monai/transforms/spatial/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/spatial/dictionary.py -------------------------------------------------------------------------------- /monai/transforms/spatial/functional.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/spatial/functional.py -------------------------------------------------------------------------------- /monai/transforms/traits.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/traits.py -------------------------------------------------------------------------------- /monai/transforms/transform.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/transform.py -------------------------------------------------------------------------------- /monai/transforms/utility/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/utility/__init__.py -------------------------------------------------------------------------------- /monai/transforms/utility/array.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/utility/array.py -------------------------------------------------------------------------------- /monai/transforms/utility/dictionary.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/utility/dictionary.py -------------------------------------------------------------------------------- /monai/transforms/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/utils.py -------------------------------------------------------------------------------- /monai/transforms/utils_create_transform_ims.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/utils_create_transform_ims.py -------------------------------------------------------------------------------- /monai/transforms/utils_pytorch_numpy_unification.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/transforms/utils_pytorch_numpy_unification.py -------------------------------------------------------------------------------- /monai/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/__init__.py -------------------------------------------------------------------------------- /monai/utils/aliases.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/aliases.py -------------------------------------------------------------------------------- /monai/utils/decorators.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/decorators.py -------------------------------------------------------------------------------- /monai/utils/deprecate_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/deprecate_utils.py -------------------------------------------------------------------------------- /monai/utils/dist.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/dist.py -------------------------------------------------------------------------------- /monai/utils/enums.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/enums.py -------------------------------------------------------------------------------- /monai/utils/jupyter_utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/jupyter_utils.py -------------------------------------------------------------------------------- /monai/utils/misc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/misc.py -------------------------------------------------------------------------------- /monai/utils/module.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/module.py -------------------------------------------------------------------------------- /monai/utils/nvtx.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/nvtx.py -------------------------------------------------------------------------------- /monai/utils/profiling.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/profiling.py -------------------------------------------------------------------------------- /monai/utils/state_cacher.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/state_cacher.py -------------------------------------------------------------------------------- /monai/utils/tf32.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/tf32.py -------------------------------------------------------------------------------- /monai/utils/type_conversion.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/utils/type_conversion.py -------------------------------------------------------------------------------- /monai/visualize/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/visualize/__init__.py -------------------------------------------------------------------------------- /monai/visualize/class_activation_maps.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/visualize/class_activation_maps.py -------------------------------------------------------------------------------- /monai/visualize/gradient_based.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/visualize/gradient_based.py -------------------------------------------------------------------------------- /monai/visualize/img2tensorboard.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/visualize/img2tensorboard.py -------------------------------------------------------------------------------- /monai/visualize/occlusion_sensitivity.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/visualize/occlusion_sensitivity.py -------------------------------------------------------------------------------- /monai/visualize/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/visualize/utils.py -------------------------------------------------------------------------------- /monai/visualize/visualizer.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/monai/visualize/visualizer.py -------------------------------------------------------------------------------- /mylib/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/__init__.py -------------------------------------------------------------------------------- /mylib/_scheduler.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/_scheduler.py -------------------------------------------------------------------------------- /mylib/conf/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/conf/__init__.py -------------------------------------------------------------------------------- /mylib/conf/base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/conf/base.py -------------------------------------------------------------------------------- /mylib/conf/mask2former.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/conf/mask2former.py -------------------------------------------------------------------------------- /mylib/conf/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/conf/utils.py -------------------------------------------------------------------------------- /mylib/datamodule/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/datamodule/__init__.py -------------------------------------------------------------------------------- /mylib/datamodule/base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/datamodule/base.py -------------------------------------------------------------------------------- /mylib/datamodule/cls_dm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/datamodule/cls_dm.py -------------------------------------------------------------------------------- /mylib/datamodule/cv.py: -------------------------------------------------------------------------------- 1 | 2 | 3 | -------------------------------------------------------------------------------- /mylib/datamodule/seg.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/datamodule/seg.py -------------------------------------------------------------------------------- /mylib/datamodule/transforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/datamodule/transforms.py -------------------------------------------------------------------------------- /mylib/metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/metrics.py -------------------------------------------------------------------------------- /mylib/models/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/__init__.py -------------------------------------------------------------------------------- /mylib/models/adaptive_resampling.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/adaptive_resampling.py -------------------------------------------------------------------------------- /mylib/models/backbones/__init__.py: -------------------------------------------------------------------------------- 1 | from .swin import * 2 | -------------------------------------------------------------------------------- /mylib/models/backbones/swin/__init__.py: -------------------------------------------------------------------------------- 1 | from .swin3d import * 2 | -------------------------------------------------------------------------------- /mylib/models/backbones/swin/common3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/backbones/swin/common3d.py -------------------------------------------------------------------------------- /mylib/models/backbones/swin/swin3d-conv.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/backbones/swin/swin3d-conv.py -------------------------------------------------------------------------------- /mylib/models/backbones/swin/swin3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/backbones/swin/swin3d.py -------------------------------------------------------------------------------- /mylib/models/backbones/swin/swin_monai.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/backbones/swin/swin_monai.py -------------------------------------------------------------------------------- /mylib/models/backbones/unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/backbones/unet.py -------------------------------------------------------------------------------- /mylib/models/blocks.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/blocks.py -------------------------------------------------------------------------------- /mylib/models/decoders/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/decoders/__init__.py -------------------------------------------------------------------------------- /mylib/models/decoders/full_res.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/decoders/full_res.py -------------------------------------------------------------------------------- /mylib/models/decoders/msdeform.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/decoders/msdeform.py -------------------------------------------------------------------------------- /mylib/models/decoders/plain_conv_unet.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/decoders/plain_conv_unet.py -------------------------------------------------------------------------------- /mylib/models/decoders/swin_unetr_decoder.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/decoders/swin_unetr_decoder.py -------------------------------------------------------------------------------- /mylib/models/decoders/uper.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/decoders/uper.py -------------------------------------------------------------------------------- /mylib/models/init.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/init.py -------------------------------------------------------------------------------- /mylib/models/layers/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/layers/__init__.py -------------------------------------------------------------------------------- /mylib/models/layers/factories.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/layers/factories.py -------------------------------------------------------------------------------- /mylib/models/layers/position_embedding.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/layers/position_embedding.py -------------------------------------------------------------------------------- /mylib/models/lightning/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/lightning/__init__.py -------------------------------------------------------------------------------- /mylib/models/lightning/cls_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/lightning/cls_model.py -------------------------------------------------------------------------------- /mylib/models/lightning/mask2former.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/lightning/mask2former.py -------------------------------------------------------------------------------- /mylib/models/lightning/model_base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/lightning/model_base.py -------------------------------------------------------------------------------- /mylib/models/lightning/seg_model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/lightning/seg_model.py -------------------------------------------------------------------------------- /mylib/models/transformer_decoder/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /mylib/models/transformer_decoder/masked_attention.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/transformer_decoder/masked_attention.py -------------------------------------------------------------------------------- /mylib/models/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/models/utils.py -------------------------------------------------------------------------------- /mylib/optim/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/optim/__init__.py -------------------------------------------------------------------------------- /mylib/optim/factory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/optim/factory.py -------------------------------------------------------------------------------- /mylib/plugins.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/plugins.py -------------------------------------------------------------------------------- /mylib/reader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/reader.py -------------------------------------------------------------------------------- /mylib/scheduler/__init__.py: -------------------------------------------------------------------------------- 1 | from .factory import create_scheduler 2 | -------------------------------------------------------------------------------- /mylib/scheduler/factory.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/scheduler/factory.py -------------------------------------------------------------------------------- /mylib/transforms/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/__init__.py -------------------------------------------------------------------------------- /mylib/transforms/intensity/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/intensity/__init__.py -------------------------------------------------------------------------------- /mylib/transforms/intensity/adjust_contrast.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/intensity/adjust_contrast.py -------------------------------------------------------------------------------- /mylib/transforms/intensity/clamp.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/intensity/clamp.py -------------------------------------------------------------------------------- /mylib/transforms/intensity/foreground_mask.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/intensity/foreground_mask.py -------------------------------------------------------------------------------- /mylib/transforms/intensity/gamma_correction.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/intensity/gamma_correction.py -------------------------------------------------------------------------------- /mylib/transforms/intensity/stats.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/intensity/stats.py -------------------------------------------------------------------------------- /mylib/transforms/io.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/io.py -------------------------------------------------------------------------------- /mylib/transforms/spatial/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/spatial/__init__.py -------------------------------------------------------------------------------- /mylib/transforms/spatial/affine_crop.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/spatial/affine_crop.py -------------------------------------------------------------------------------- /mylib/transforms/spatial/affine_orientation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/spatial/affine_orientation.py -------------------------------------------------------------------------------- /mylib/transforms/spatial/center_crop.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/spatial/center_crop.py -------------------------------------------------------------------------------- /mylib/transforms/spatial/simulate_low_res.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/spatial/simulate_low_res.py -------------------------------------------------------------------------------- /mylib/transforms/spatial/square_pad.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/spatial/square_pad.py -------------------------------------------------------------------------------- /mylib/transforms/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/transforms/utils.py -------------------------------------------------------------------------------- /mylib/types.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/types.py -------------------------------------------------------------------------------- /mylib/utils/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/utils/__init__.py -------------------------------------------------------------------------------- /mylib/utils/enums.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/utils/enums.py -------------------------------------------------------------------------------- /mylib/utils/grad.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/utils/grad.py -------------------------------------------------------------------------------- /mylib/utils/index_tracker.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/utils/index_tracker.py -------------------------------------------------------------------------------- /mylib/utils/lightning.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/mylib/utils/lightning.py -------------------------------------------------------------------------------- /pumit/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/__init__.py -------------------------------------------------------------------------------- /pumit/datamodule.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/datamodule.py -------------------------------------------------------------------------------- /pumit/model/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/model/__init__.py -------------------------------------------------------------------------------- /pumit/model/adapter.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/model/adapter.py -------------------------------------------------------------------------------- /pumit/model/mim.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/model/mim.py -------------------------------------------------------------------------------- /pumit/model/rope.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/model/rope.py -------------------------------------------------------------------------------- /pumit/model/vit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/model/vit.py -------------------------------------------------------------------------------- /pumit/optim.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/optim.py -------------------------------------------------------------------------------- /pumit/reader.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/reader.py -------------------------------------------------------------------------------- /pumit/sac.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/sac.py -------------------------------------------------------------------------------- /pumit/tokenizer/__init__.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/tokenizer/__init__.py -------------------------------------------------------------------------------- /pumit/tokenizer/base.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/tokenizer/base.py -------------------------------------------------------------------------------- /pumit/tokenizer/discriminator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/tokenizer/discriminator.py -------------------------------------------------------------------------------- /pumit/tokenizer/loss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/tokenizer/loss.py -------------------------------------------------------------------------------- /pumit/tokenizer/lpips.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/tokenizer/lpips.py -------------------------------------------------------------------------------- /pumit/tokenizer/quantize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/tokenizer/quantize.py -------------------------------------------------------------------------------- /pumit/tokenizer/simple.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/tokenizer/simple.py -------------------------------------------------------------------------------- /pumit/tokenizer/vgg.pth: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/tokenizer/vgg.pth -------------------------------------------------------------------------------- /pumit/tokenizer/vqvae.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/tokenizer/vqvae.py -------------------------------------------------------------------------------- /pumit/transforms.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/pumit/transforms.py -------------------------------------------------------------------------------- /scripts/data/check-path.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/data/check-path.py -------------------------------------------------------------------------------- /scripts/data/check-shape.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/data/check-shape.py -------------------------------------------------------------------------------- /scripts/data/check-spacing.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/data/check-spacing.py -------------------------------------------------------------------------------- /scripts/data/normalize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/data/normalize.py -------------------------------------------------------------------------------- /scripts/data/process.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/data/process.py -------------------------------------------------------------------------------- /scripts/data/sum.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/data/sum.py -------------------------------------------------------------------------------- /scripts/downstream/btcv/eva02-b.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/btcv/eva02-b.zsh -------------------------------------------------------------------------------- /scripts/downstream/btcv/eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/btcv/eval.py -------------------------------------------------------------------------------- /scripts/downstream/btcv/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/btcv/main.py -------------------------------------------------------------------------------- /scripts/downstream/btcv/nnunet-convert.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/btcv/nnunet-convert.py -------------------------------------------------------------------------------- /scripts/downstream/btcv/pumit-b.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/btcv/pumit-b.zsh -------------------------------------------------------------------------------- /scripts/downstream/btcv/scratch-b.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/btcv/scratch-b.zsh -------------------------------------------------------------------------------- /scripts/downstream/btcv/test-b.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/btcv/test-b.zsh -------------------------------------------------------------------------------- /scripts/downstream/chaos/eva02-b.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/chaos/eva02-b.zsh -------------------------------------------------------------------------------- /scripts/downstream/chaos/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/chaos/main.py -------------------------------------------------------------------------------- /scripts/downstream/chaos/nnunet-convert.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/chaos/nnunet-convert.py -------------------------------------------------------------------------------- /scripts/downstream/chaos/predict-b.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/chaos/predict-b.zsh -------------------------------------------------------------------------------- /scripts/downstream/chaos/preprocess.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/chaos/preprocess.py -------------------------------------------------------------------------------- /scripts/downstream/chaos/pumit-b.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/chaos/pumit-b.zsh -------------------------------------------------------------------------------- /scripts/downstream/chaos/scratch-b.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/chaos/scratch-b.zsh -------------------------------------------------------------------------------- /scripts/downstream/chaos/submit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/chaos/submit.py -------------------------------------------------------------------------------- /scripts/downstream/medmnistv2/batch-eval-medmnist-eva02-b.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/medmnistv2/batch-eval-medmnist-eva02-b.py -------------------------------------------------------------------------------- /scripts/downstream/medmnistv2/batch-eval-medmnist-pumit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/medmnistv2/batch-eval-medmnist-pumit.py -------------------------------------------------------------------------------- /scripts/downstream/medmnistv2/batch-eval-medmnist-smit.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/medmnistv2/batch-eval-medmnist-smit.py -------------------------------------------------------------------------------- /scripts/downstream/medmnistv2/batch-eval-medmnist-unimiss.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/medmnistv2/batch-eval-medmnist-unimiss.py -------------------------------------------------------------------------------- /scripts/downstream/medmnistv2/eval-medmnist.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/downstream/medmnistv2/eval-medmnist.py -------------------------------------------------------------------------------- /scripts/model/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/model/main.py -------------------------------------------------------------------------------- /scripts/model/mim-b.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/model/mim-b.zsh -------------------------------------------------------------------------------- /scripts/model/mim-l.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/model/mim-l.zsh -------------------------------------------------------------------------------- /scripts/tokenizer/eval.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/tokenizer/eval.py -------------------------------------------------------------------------------- /scripts/tokenizer/main.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/tokenizer/main.py -------------------------------------------------------------------------------- /scripts/tokenizer/reconstruct-2d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/tokenizer/reconstruct-2d.py -------------------------------------------------------------------------------- /scripts/tokenizer/reconstruct-3d.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/tokenizer/reconstruct-3d.py -------------------------------------------------------------------------------- /scripts/tokenizer/sharpen.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/tokenizer/sharpen.zsh -------------------------------------------------------------------------------- /scripts/tokenizer/shift-weights.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/tokenizer/shift-weights.py -------------------------------------------------------------------------------- /scripts/tokenizer/simple-gumbel.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/tokenizer/simple-gumbel.zsh -------------------------------------------------------------------------------- /scripts/tokenizer/simple-soft.zsh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/tokenizer/simple-soft.zsh -------------------------------------------------------------------------------- /scripts/tokenizer/visualize.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/function2-llx/PUMIT/HEAD/scripts/tokenizer/visualize.py --------------------------------------------------------------------------------