├── .gitattributes ├── .github └── workflows │ ├── github-actions-demo.yml │ └── mk-docs.yaml ├── .gitignore ├── CHANGELOG.md ├── LICENSE ├── README.md ├── bin ├── LICENSE ├── README.md ├── SCHEMAS2MD.md ├── _jsonref2json.py ├── adhoc │ ├── beaconCommonComponents.json │ └── ontologyTerm.json ├── beaconYamler.py ├── beacon_yaml2md.pl ├── config │ └── beaconYamler.yaml ├── deref_schemas │ ├── analyses │ │ ├── defaultSchema.json │ │ └── defaultSchema.yaml │ ├── biosamples │ │ ├── defaultSchema.json │ │ └── defaultSchema.yaml │ ├── cohorts │ │ ├── defaultSchema.json │ │ └── defaultSchema.yaml │ ├── datasets │ │ ├── defaultSchema.json │ │ └── defaultSchema.yaml │ ├── genomicVariations │ │ ├── defaultSchema.json │ │ └── defaultSchema.yaml │ ├── individuals │ │ ├── defaultSchema.json │ │ └── defaultSchema.yaml │ ├── obj │ │ ├── Age.yaml │ │ ├── AgeRange.yaml │ │ ├── Allele.yaml │ │ ├── Complex Value.yaml │ │ ├── CopyNumber.yaml │ │ ├── GestationalAge.yaml │ │ ├── Haplotype.yaml │ │ ├── LegacyVariation.yaml │ │ ├── MolecularVariation.yaml │ │ ├── SystemicVariation.yaml │ │ ├── TimeInterval.yaml │ │ ├── Value.yaml │ │ ├── affected.yaml │ │ ├── ageAtExposure.yaml │ │ ├── ageAtOnset.yaml │ │ ├── ageAtProcedure.yaml │ │ ├── ageOfOnset.yaml │ │ ├── ageRange.yaml │ │ ├── aligner.yaml │ │ ├── alleleFrequency.yaml │ │ ├── alleleOrigin.yaml │ │ ├── alternateBases.yaml │ │ ├── aminoacidChanges.yaml │ │ ├── analysisDate.yaml │ │ ├── analysisId.yaml │ │ ├── annotatedWith.yaml │ │ ├── assayCode.yaml │ │ ├── availability.yaml │ │ ├── availabilityCount.yaml │ │ ├── biosampleId.yaml │ │ ├── biosampleStatus.yaml │ │ ├── bodySite.yaml │ │ ├── caseLevelData.yaml │ │ ├── category.yaml │ │ ├── clinicalInterpretations.yaml │ │ ├── clinicalRelevance.yaml │ │ ├── clinvarVariantId.yaml │ │ ├── cohortDataTypes.yaml │ │ ├── cohortDesign.yaml │ │ ├── cohortSize.yaml │ │ ├── cohortType.yaml │ │ ├── collectionDate.yaml │ │ ├── collectionEvents.yaml │ │ ├── collectionMoment.yaml │ │ ├── conditionId.yaml │ │ ├── createDateTime.yaml │ │ ├── cumulativeDose.yaml │ │ ├── dataUseConditions.yaml │ │ ├── date.yaml │ │ ├── dateOfProcedure.yaml │ │ ├── description.yaml │ │ ├── diagnosticMarkers.yaml │ │ ├── disease.yaml │ │ ├── diseaseCode.yaml │ │ ├── diseaseConditions.yaml │ │ ├── diseases.yaml │ │ ├── distribution.yaml │ │ ├── doseIntervals.yaml │ │ ├── duoDataUse.yaml │ │ ├── duration.yaml │ │ ├── effect.yaml │ │ ├── end.yaml │ │ ├── ethnicities.yaml │ │ ├── ethnicity.yaml │ │ ├── eventAgeRange.yaml │ │ ├── eventCases.yaml │ │ ├── eventControls.yaml │ │ ├── eventDataTypes.yaml │ │ ├── eventDate.yaml │ │ ├── eventDiseases.yaml │ │ ├── eventEthnicities.yaml │ │ ├── eventGenders.yaml │ │ ├── eventLocations.yaml │ │ ├── eventNum.yaml │ │ ├── eventPhenotypes.yaml │ │ ├── eventSize.yaml │ │ ├── eventTimeline.yaml │ │ ├── evidence.yaml │ │ ├── evidenceCode.yaml │ │ ├── evidenceType.yaml │ │ ├── excluded.yaml │ │ ├── exclusionCriteria.yaml │ │ ├── exposureCode.yaml │ │ ├── exposures.yaml │ │ ├── externalUrl.yaml │ │ ├── familyHistory.yaml │ │ ├── featureClass.yaml │ │ ├── featureID.yaml │ │ ├── featureType.yaml │ │ ├── frequencies.yaml │ │ ├── frequencyInPopulations.yaml │ │ ├── genders.yaml │ │ ├── geneIds.yaml │ │ ├── genomicFeatures.yaml │ │ ├── genomicHGVSId.yaml │ │ ├── geographicOrigin.yaml │ │ ├── histologicalDiagnosis.yaml │ │ ├── id.yaml │ │ ├── identifiers.yaml │ │ ├── inclusionCriteria.yaml │ │ ├── individualId.yaml │ │ ├── info.yaml │ │ ├── interval.yaml │ │ ├── interventionsOrProcedures.yaml │ │ ├── iso8601duration.yaml │ │ ├── karyotypicSex.yaml │ │ ├── label.yaml │ │ ├── libraryLayout.yaml │ │ ├── librarySelection.yaml │ │ ├── librarySource.yaml │ │ ├── libraryStrategy.yaml │ │ ├── location.yaml │ │ ├── locations.yaml │ │ ├── measurementValue.yaml │ │ ├── measurements.yaml │ │ ├── measures.yaml │ │ ├── memberId.yaml │ │ ├── members.yaml │ │ ├── molecularAttributes.yaml │ │ ├── molecularEffects.yaml │ │ ├── name.yaml │ │ ├── notes.yaml │ │ ├── numSubjects.yaml │ │ ├── observationMoment.yaml │ │ ├── obtentionProcedure.yaml │ │ ├── onset.yaml │ │ ├── pathologicalStage.yaml │ │ ├── pathologicalTnmFinding.yaml │ │ ├── pedigrees.yaml │ │ ├── phenotypicConditions.yaml │ │ ├── phenotypicEffects.yaml │ │ ├── phenotypicFeatures.yaml │ │ ├── pipelineName.yaml │ │ ├── pipelineRef.yaml │ │ ├── platform.yaml │ │ ├── platformModel.yaml │ │ ├── population.yaml │ │ ├── procedure.yaml │ │ ├── procedureCode.yaml │ │ ├── proteinHGVSIds.yaml │ │ ├── quantity.yaml │ │ ├── reference.yaml │ │ ├── referenceBases.yaml │ │ ├── referenceRange.yaml │ │ ├── resolution.yaml │ │ ├── role.yaml │ │ ├── routeOfAdministration.yaml │ │ ├── runDate.yaml │ │ ├── runId.yaml │ │ ├── sampleOriginDetail.yaml │ │ ├── sampleOriginType.yaml │ │ ├── sampleProcessing.yaml │ │ ├── sampleStorage.yaml │ │ ├── scheduleFrequency.yaml │ │ ├── severity.yaml │ │ ├── sex.yaml │ │ ├── source.yaml │ │ ├── sourceReference.yaml │ │ ├── stage.yaml │ │ ├── start.yaml │ │ ├── toolName.yaml │ │ ├── toolReferences.yaml │ │ ├── transcriptHGVSIds.yaml │ │ ├── treatmentCode.yaml │ │ ├── treatments.yaml │ │ ├── tumorGrade.yaml │ │ ├── tumorProgression.yaml │ │ ├── unit.yaml │ │ ├── updateDateTime.yaml │ │ ├── value.yaml │ │ ├── variantAlternativeIds.yaml │ │ ├── variantCaller.yaml │ │ ├── variantInternalId.yaml │ │ ├── variantLevelData.yaml │ │ ├── variantType.yaml │ │ ├── variation.yaml │ │ ├── version.yaml │ │ └── zygosity.yaml │ └── runs │ │ ├── defaultSchema.json │ │ └── defaultSchema.yaml ├── jsonref2json.js ├── node_modules │ ├── .bin │ │ └── js-yaml │ ├── .package-lock.json │ ├── @apidevtools │ │ └── json-schema-ref-parser │ │ │ ├── CHANGELOG.md │ │ │ ├── LICENSE │ │ │ ├── README.md │ │ │ ├── lib │ │ │ ├── bundle.js │ │ │ ├── dereference.js │ │ │ ├── index.d.ts │ │ │ ├── index.js │ │ │ ├── normalize-args.js │ │ │ ├── options.js │ │ │ ├── parse.js │ │ │ ├── parsers │ │ │ │ ├── binary.js │ │ │ │ ├── json.js │ │ │ │ ├── text.js │ │ │ │ └── yaml.js │ │ │ ├── pointer.js │ │ │ ├── ref.js │ │ │ ├── refs.js │ │ │ ├── resolve-external.js │ │ │ ├── resolvers │ │ │ │ ├── file.js │ │ │ │ └── http.js │ │ │ └── util │ │ │ │ ├── errors.js │ │ │ │ ├── plugins.js │ │ │ │ └── url.js │ │ │ └── package.json │ ├── @jsdevtools │ │ └── ono │ │ │ ├── CHANGELOG.md │ │ │ ├── LICENSE │ │ │ ├── README.md │ │ │ ├── cjs │ │ │ ├── constructor.d.ts │ │ │ ├── constructor.js │ │ │ ├── constructor.js.map │ │ │ ├── extend-error.d.ts │ │ │ ├── extend-error.js │ │ │ ├── extend-error.js.map │ │ │ ├── index.d.ts │ │ │ ├── index.js │ │ │ ├── index.js.map │ │ │ ├── isomorphic.browser.d.ts │ │ │ ├── isomorphic.browser.js │ │ │ ├── isomorphic.browser.js.map │ │ │ ├── isomorphic.node.d.ts │ │ │ ├── isomorphic.node.js │ │ │ ├── isomorphic.node.js.map │ │ │ ├── normalize.d.ts │ │ │ ├── normalize.js │ │ │ ├── normalize.js.map │ │ │ ├── singleton.d.ts │ │ │ ├── singleton.js │ │ │ ├── singleton.js.map │ │ │ ├── stack.d.ts │ │ │ ├── stack.js │ │ │ ├── stack.js.map │ │ │ ├── to-json.d.ts │ │ │ ├── to-json.js │ │ │ ├── to-json.js.map │ │ │ ├── types.d.ts │ │ │ ├── types.js │ │ │ └── types.js.map │ │ │ ├── esm │ │ │ ├── constructor.d.ts │ │ │ ├── constructor.js │ │ │ ├── constructor.js.map │ │ │ ├── extend-error.d.ts │ │ │ ├── extend-error.js │ │ │ ├── extend-error.js.map │ │ │ ├── index.d.ts │ │ │ ├── index.js │ │ │ ├── index.js.map │ │ │ ├── isomorphic.browser.d.ts │ │ │ ├── isomorphic.browser.js │ │ │ ├── isomorphic.browser.js.map │ │ │ ├── isomorphic.node.d.ts │ │ │ ├── isomorphic.node.js │ │ │ ├── isomorphic.node.js.map │ │ │ ├── normalize.d.ts │ │ │ ├── normalize.js │ │ │ ├── normalize.js.map │ │ │ ├── singleton.d.ts │ │ │ ├── singleton.js │ │ │ ├── singleton.js.map │ │ │ ├── stack.d.ts │ │ │ ├── stack.js │ │ │ ├── stack.js.map │ │ │ ├── to-json.d.ts │ │ │ ├── to-json.js │ │ │ ├── to-json.js.map │ │ │ ├── types.d.ts │ │ │ ├── types.js │ │ │ └── types.js.map │ │ │ └── package.json │ ├── @types │ │ └── json-schema │ │ │ ├── LICENSE │ │ │ ├── README.md │ │ │ ├── index.d.ts │ │ │ └── package.json │ ├── argparse │ │ ├── CHANGELOG.md │ │ ├── LICENSE │ │ ├── README.md │ │ ├── argparse.js │ │ ├── lib │ │ │ ├── sub.js │ │ │ └── textwrap.js │ │ └── package.json │ ├── call-me-maybe │ │ ├── .npmignore │ │ ├── .travis.yml │ │ ├── .zuul.yml │ │ ├── LICENSE │ │ ├── README.md │ │ ├── index.js │ │ ├── package.json │ │ └── test │ │ │ └── maybeTest.js │ └── js-yaml │ │ ├── CHANGELOG.md │ │ ├── LICENSE │ │ ├── README.md │ │ ├── bin │ │ └── js-yaml.js │ │ ├── dist │ │ ├── js-yaml.js │ │ ├── js-yaml.min.js │ │ └── js-yaml.mjs │ │ ├── index.js │ │ ├── lib │ │ ├── common.js │ │ ├── dumper.js │ │ ├── exception.js │ │ ├── loader.js │ │ ├── schema.js │ │ ├── schema │ │ │ ├── core.js │ │ │ ├── default.js │ │ │ ├── failsafe.js │ │ │ └── json.js │ │ ├── snippet.js │ │ ├── type.js │ │ └── type │ │ │ ├── binary.js │ │ │ ├── bool.js │ │ │ ├── float.js │ │ │ ├── int.js │ │ │ ├── map.js │ │ │ ├── merge.js │ │ │ ├── null.js │ │ │ ├── omap.js │ │ │ ├── pairs.js │ │ │ ├── seq.js │ │ │ ├── set.js │ │ │ ├── str.js │ │ │ └── timestamp.js │ │ └── package.json ├── transform_json2md.sh └── yamlerRunner.sh ├── docs ├── CNAME ├── README.md ├── beacon-flavours.md ├── changes-todo.md ├── code-organization.md ├── contribute.md ├── css │ └── theme_overrides.css ├── filters.md ├── formats-standards.md ├── framework.md ├── handovers.md ├── img │ ├── Beacon-Networks-v2-graphics │ │ ├── Beacon-Networks-v2-graphics-Michael.001.png │ │ ├── Beacon-Networks-v2-graphics-Michael.002.png │ │ └── Beacon-Networks-v2-graphics-Michael.003.png │ ├── Beacon2API_branch_decision_tree.png │ ├── BeaconBracketQuery-limited-match-graphics.png │ ├── BeaconGeneQuery-graphics.png │ ├── BeaconRangeQuery-graphics.png │ ├── GA-logo.png │ ├── Pedigree-image1.jpg │ ├── Schema.png │ ├── beacon-network.png │ ├── elixir-white-48x36.png │ ├── ga4gh_circle.ico │ ├── link-solid.svg │ ├── logo-elixir-48x32.png │ ├── option-A.png │ ├── option-B.png │ └── option-C.png ├── implementations-options.md ├── implementations │ └── org.progenetix.md ├── index.md ├── models.md ├── networks.md ├── other-implementations.md ├── pedigree.md ├── records.md ├── requests │ ├── requestParameterComponents.md │ └── requestProfiles_g_variant.md ├── rest-api.md ├── schemas-md │ ├── analyses_defaultSchema.md │ ├── beacon_terms.md │ ├── biosamples_defaultSchema.md │ ├── cohorts_defaultSchema.md │ ├── datasets_defaultSchema.md │ ├── genomicVariations_defaultSchema.md │ ├── individuals_defaultSchema.md │ ├── obj │ │ ├── Age.md │ │ ├── AgeRange_PXF.md │ │ ├── Allele.md │ │ ├── Complex Value.md │ │ ├── CopyNumber.md │ │ ├── GestationalAge.md │ │ ├── Haplotype.md │ │ ├── LegacyVariation.md │ │ ├── MolecularVariation.md │ │ ├── SystemicVariation.md │ │ ├── TimeInterval.md │ │ ├── Value_PXF.md │ │ ├── affected.md │ │ ├── ageAtExposure.md │ │ ├── ageAtOnset.md │ │ ├── ageAtProcedure.md │ │ ├── ageOfOnset.md │ │ ├── ageRange.md │ │ ├── aligner.md │ │ ├── alleleFrequency.md │ │ ├── alleleOrigin.md │ │ ├── alternateBases.md │ │ ├── aminoacidChanges.md │ │ ├── analysisDate.md │ │ ├── analysisId.md │ │ ├── annotatedWith.md │ │ ├── assayCode.md │ │ ├── availability.md │ │ ├── availabilityCount.md │ │ ├── biosampleId.md │ │ ├── biosampleStatus.md │ │ ├── bodySite.md │ │ ├── caseLevelData.md │ │ ├── category.md │ │ ├── clinicalInterpretations.md │ │ ├── clinicalRelevance.md │ │ ├── clinvarVariantId.md │ │ ├── cohortDataTypes.md │ │ ├── cohortDesign.md │ │ ├── cohortSize.md │ │ ├── cohortType.md │ │ ├── collectionDate.md │ │ ├── collectionEvents.md │ │ ├── collectionMoment.md │ │ ├── conditionId.md │ │ ├── createDateTime.md │ │ ├── cumulativeDose.md │ │ ├── dataUseConditions.md │ │ ├── date.md │ │ ├── dateOfProcedure.md │ │ ├── description.md │ │ ├── diagnosticMarkers.md │ │ ├── disease.md │ │ ├── diseaseCode.md │ │ ├── diseaseConditions.md │ │ ├── diseases.md │ │ ├── distribution.md │ │ ├── doseIntervals.md │ │ ├── duoDataUse.md │ │ ├── duration.md │ │ ├── effect.md │ │ ├── end.md │ │ ├── ethnicities.md │ │ ├── ethnicity.md │ │ ├── eventAgeRange.md │ │ ├── eventCases.md │ │ ├── eventControls.md │ │ ├── eventDataTypes.md │ │ ├── eventDate.md │ │ ├── eventDiseases.md │ │ ├── eventEthnicities.md │ │ ├── eventGenders.md │ │ ├── eventLocations.md │ │ ├── eventNum.md │ │ ├── eventPhenotypes.md │ │ ├── eventSize.md │ │ ├── eventTimeline.md │ │ ├── evidence.md │ │ ├── evidenceCode.md │ │ ├── evidenceType.md │ │ ├── excluded.md │ │ ├── exclusionCriteria.md │ │ ├── exposureCode.md │ │ ├── exposures.md │ │ ├── externalUrl.md │ │ ├── familyHistory.md │ │ ├── featureClass.md │ │ ├── featureID.md │ │ ├── featureType.md │ │ ├── frequencies.md │ │ ├── frequencyInPopulations.md │ │ ├── genders.md │ │ ├── geneIds.md │ │ ├── genomicFeatures.md │ │ ├── genomicHGVSId.md │ │ ├── geographicOrigin.md │ │ ├── histologicalDiagnosis.md │ │ ├── id.md │ │ ├── identifiers.md │ │ ├── inclusionCriteria.md │ │ ├── individualId.md │ │ ├── info.md │ │ ├── interval.md │ │ ├── interventionsOrProcedures.md │ │ ├── iso8601duration.md │ │ ├── karyotypicSex.md │ │ ├── label.md │ │ ├── libraryLayout.md │ │ ├── librarySelection.md │ │ ├── librarySource.md │ │ ├── libraryStrategy.md │ │ ├── location.md │ │ ├── locations.md │ │ ├── measurementValue.md │ │ ├── measurements.md │ │ ├── measures.md │ │ ├── memberId.md │ │ ├── members.md │ │ ├── modifiers.md │ │ ├── molecularAttributes.md │ │ ├── molecularEffects.md │ │ ├── name.md │ │ ├── notes.md │ │ ├── numSubjects.md │ │ ├── observationMoment.md │ │ ├── obtentionProcedure.md │ │ ├── onset.md │ │ ├── pathologicalStage.md │ │ ├── pathologicalTnmFinding.md │ │ ├── pedigrees.md │ │ ├── phenotypicConditions.md │ │ ├── phenotypicEffects.md │ │ ├── phenotypicFeatures.md │ │ ├── pipelineName.md │ │ ├── pipelineRef.md │ │ ├── platform.md │ │ ├── platformModel.md │ │ ├── population.md │ │ ├── procedure.md │ │ ├── procedureCode.md │ │ ├── proteinHGVSIds.md │ │ ├── quantity.md │ │ ├── reference.md │ │ ├── referenceBases.md │ │ ├── referenceRange.md │ │ ├── resolution.md │ │ ├── role.md │ │ ├── routeOfAdministration.md │ │ ├── runDate.md │ │ ├── runId.md │ │ ├── sampleOriginDetail.md │ │ ├── sampleOriginType.md │ │ ├── sampleProcessing.md │ │ ├── sampleStorage.md │ │ ├── scheduleFrequency.md │ │ ├── severity.md │ │ ├── sex.md │ │ ├── source.md │ │ ├── sourceReference.md │ │ ├── stage.md │ │ ├── start.md │ │ ├── toolName.md │ │ ├── toolReferences.md │ │ ├── transcriptHGVSIds.md │ │ ├── treatmentCode.md │ │ ├── treatments.md │ │ ├── tumorGrade.md │ │ ├── tumorProgression.md │ │ ├── unit.md │ │ ├── updateDateTime.md │ │ ├── value.md │ │ ├── variantAlternativeIds.md │ │ ├── variantCaller.md │ │ ├── variantInternalId.md │ │ ├── variantLevelData.md │ │ ├── variantType.md │ │ ├── variation.md │ │ ├── version.md │ │ └── zygosity.md │ └── runs_defaultSchema.md ├── security.md └── variant-queries.md ├── framework ├── json │ ├── .gitignore │ ├── README.md │ ├── common │ │ ├── basicElement.json │ │ ├── beaconCommonComponents.json │ │ ├── elementWithDescription.json │ │ ├── examples │ │ │ ├── basicElement-example.json │ │ │ ├── beaconCommonComponents-example.json │ │ │ ├── elementWithDescription-example.json │ │ │ ├── ontologizedElement-example.json │ │ │ ├── ontologyTerm-example.json │ │ │ ├── referenceToAnSchema-MAX-example.json │ │ │ └── referenceToAnSchema-MIN-example.json │ │ ├── info.json │ │ ├── ontologizedElement.json │ │ ├── ontologyTerm.json │ │ └── referenceToAnSchema.json │ ├── configuration │ │ ├── beaconConfigurationSchema.json │ │ ├── beaconMapSchema.json │ │ ├── entryTypeDefinition.json │ │ ├── entryTypesSchema.json │ │ └── examples │ │ │ ├── beaconConfiguration-example.json │ │ │ ├── beaconMap-MIN-example.json │ │ │ ├── beaconMap-example.json │ │ │ ├── entriesCollectionDefinition_MIN_example.json │ │ │ ├── entriesCollectionDefinition_example.json │ │ │ └── entryTypeDefinition-MIN-example.json │ ├── endpoints.json │ ├── requests │ │ ├── beaconRequestBody.json │ │ ├── beaconRequestMeta.json │ │ ├── examples-fullDocuments │ │ │ ├── beaconRequestBody-MAX-example.json │ │ │ └── beaconRequestBody-MIN-example.json │ │ ├── examples-sections │ │ │ ├── beaconRequestMeta-example.json │ │ │ ├── filteringTerms-example.json │ │ │ └── requestParameters-example.json │ │ ├── filteringTerms.json │ │ └── requestParameters.json │ └── responses │ │ ├── beaconBooleanResponse.json │ │ ├── beaconCollectionsResponse.json │ │ ├── beaconConfigurationResponse.json │ │ ├── beaconCountResponse.json │ │ ├── beaconEntryTypesResponse.json │ │ ├── beaconErrorResponse.json │ │ ├── beaconFilteringTermsResponse.json │ │ ├── beaconInfoResponse.json │ │ ├── beaconMapResponse.json │ │ ├── beaconResultsetsResponse.json │ │ ├── examples-fullDocuments │ │ ├── beaconBooleanResponse-example.json │ │ ├── beaconCollectionsResponse-MID-example.json │ │ ├── beaconCollectionsResponse-MIN-example.json │ │ ├── beaconConfigurationResponse-example.json │ │ ├── beaconCountResponse-example.json │ │ ├── beaconEntryTypesResponse-example.json │ │ ├── beaconErrorResponse_example.json │ │ ├── beaconFilteringTermsResponse-example.json │ │ ├── beaconInfo-MAX-example.json │ │ ├── beaconInfo-MIN-example.json │ │ ├── beaconMapResponse-example.json │ │ └── beaconResultsetResponse-MIN-example.json │ │ ├── examples-sections │ │ ├── beaconBooleanResponseSection-example.json │ │ ├── beaconCountResponseSection-example.json │ │ ├── beaconInformationalResponseMeta-example.json │ │ ├── beaconReceivedRequestSummary-MAX-example.json │ │ ├── beaconReceivedRequestSummary-MIN-example.json │ │ ├── beaconResponseMeta-example.json │ │ ├── beaconResultsetEmpty-example.json │ │ ├── beaconResultsets-MAX-example.json │ │ ├── beaconResultsets-MID-example.json │ │ └── beaconResultsets-MIN-example.json │ │ ├── ga4gh-service-info-1-0-0-schema.json │ │ └── sections │ │ ├── beaconBooleanResponseSection.json │ │ ├── beaconCountResponseSection.json │ │ ├── beaconFilteringTermsResults.json │ │ ├── beaconInfoResults.json │ │ ├── beaconInformationalResponseMeta.json │ │ ├── beaconReceivedRequestSummary.json │ │ ├── beaconResponseMeta.json │ │ ├── beaconResultsets.json │ │ └── beaconSummaryResponseSection.json └── src │ ├── .gitignore │ ├── README.md │ ├── common │ ├── basicElement.yaml │ ├── beaconCommonComponents.yaml │ ├── elementWithDescription.yaml │ ├── examples │ │ ├── basicElement-example.yaml │ │ ├── beaconCommonComponents-example.yaml │ │ ├── elementWithDescription-example.yaml │ │ ├── ontologizedElement-example.yaml │ │ ├── ontologyTerm-example.yaml │ │ ├── referenceToAnSchema-MAX-example.yaml │ │ └── referenceToAnSchema-MIN-example.yaml │ ├── info.yaml │ ├── ontologizedElement.yaml │ ├── ontologyTerm.yaml │ └── referenceToAnSchema.yaml │ ├── configuration │ ├── beaconConfigurationSchema.yaml │ ├── beaconMapSchema.yaml │ ├── entryTypeDefinition.yaml │ ├── entryTypesSchema.yaml │ └── examples │ │ ├── beaconConfiguration-example.yaml │ │ ├── beaconMap-MIN-example.yaml │ │ ├── beaconMap-example.yaml │ │ ├── entriesCollectionDefinition_MIN_example.yaml │ │ ├── entriesCollectionDefinition_example.yaml │ │ └── entryTypeDefinition-MIN-example.yaml │ ├── endpoints.yaml │ ├── requests │ ├── beaconRequestBody.yaml │ ├── beaconRequestMeta.yaml │ ├── examples-fullDocuments │ │ ├── beaconRequestBody-MAX-example.yaml │ │ └── beaconRequestBody-MIN-example.yaml │ ├── examples-sections │ │ ├── beaconRequestMeta-example.yaml │ │ ├── filteringTerms-example.yaml │ │ └── requestParameters-example.yaml │ ├── filteringTerms.yaml │ └── requestParameters.yaml │ └── responses │ ├── beaconBooleanResponse.yaml │ ├── beaconCollectionsResponse.yaml │ ├── beaconConfigurationResponse.yaml │ ├── beaconCountResponse.yaml │ ├── beaconEntryTypesResponse.yaml │ ├── beaconErrorResponse.yaml │ ├── beaconFilteringTermsResponse.yaml │ ├── beaconInfoResponse.yaml │ ├── beaconMapResponse.yaml │ ├── beaconResultsetsResponse.yaml │ ├── examples-fullDocuments │ ├── beaconBooleanResponse-example.yaml │ ├── beaconCollectionsResponse-MID-example.yaml │ ├── beaconCollectionsResponse-MIN-example.yaml │ ├── beaconConfigurationResponse-example.yaml │ ├── beaconCountResponse-example.yaml │ ├── beaconEntryTypesResponse-example.yaml │ ├── beaconErrorResponse_example.yaml │ ├── beaconFilteringTermsResponse-example.yaml │ ├── beaconInfo-MAX-example.yaml │ ├── beaconInfo-MIN-example.yaml │ ├── beaconMapResponse-example.yaml │ └── beaconResultsetResponse-MIN-example.yaml │ ├── examples-sections │ ├── beaconBooleanResponseSection-example.yaml │ ├── beaconCountResponseSection-example.yaml │ ├── beaconInformationalResponseMeta-example.yaml │ ├── beaconReceivedRequestSummary-MAX-example.yaml │ ├── beaconReceivedRequestSummary-MIN-example.yaml │ ├── beaconResponseMeta-example.yaml │ ├── beaconResultsetEmpty-example.yaml │ ├── beaconResultsets-MAX-example.yaml │ ├── beaconResultsets-MID-example.yaml │ └── beaconResultsets-MIN-example.yaml │ ├── ga4gh-service-info-1-0-0-schema.yaml │ └── sections │ ├── beaconBooleanResponseSection.yaml │ ├── beaconCountResponseSection.yaml │ ├── beaconFilteringTermsResults.yaml │ ├── beaconInfoResults.yaml │ ├── beaconInformationalResponseMeta.yaml │ ├── beaconReceivedRequestSummary.yaml │ ├── beaconResponseMeta.yaml │ ├── beaconResultsets.yaml │ └── beaconSummaryResponseSection.yaml ├── mkdocs.yaml ├── models ├── README.md ├── json │ └── beacon-v2-default-model │ │ ├── analyses │ │ ├── defaultSchema.json │ │ ├── endpoints.json │ │ └── examples │ │ │ ├── analyses-MAX-example.json │ │ │ └── analyses-MIN-example.json │ │ ├── beaconConfiguration.json │ │ ├── beaconMap.json │ │ ├── biosamples │ │ ├── defaultSchema.json │ │ ├── endpoints.json │ │ └── examples │ │ │ ├── biosample-MID-example.json │ │ │ └── biosample-MIN-example.json │ │ ├── cohorts │ │ ├── defaultSchema.json │ │ ├── endpoints.json │ │ └── examples │ │ │ ├── cohorts-MAX-example.json │ │ │ ├── cohorts-MID-example.json │ │ │ └── cohorts-MIN-example.json │ │ ├── common │ │ ├── age.json │ │ ├── ageRange.json │ │ ├── commonDefinitions.json │ │ ├── complexValue.json │ │ ├── dataUseConditions.json │ │ ├── disease.json │ │ ├── doseInterval.json │ │ ├── evidence.json │ │ ├── exposure.json │ │ ├── externalReference.json │ │ ├── gestationalAge.json │ │ ├── info.json │ │ ├── measurement.json │ │ ├── pedigree.json │ │ ├── phenotypicFeature.json │ │ ├── procedure.json │ │ ├── quantity.json │ │ ├── referenceRange.json │ │ ├── timeElement.json │ │ ├── timeInterval.json │ │ ├── treatment.json │ │ └── value.json │ │ ├── datasets │ │ ├── defaultSchema.json │ │ ├── endpoints.json │ │ └── examples │ │ │ ├── dataset-MIN-example.json │ │ │ └── dataset-Max-example.json │ │ ├── endpoints.json │ │ ├── genomicVariations │ │ ├── defaultSchema.json │ │ ├── endpoints.json │ │ ├── examples │ │ │ ├── genomicVariant-MID-example.json │ │ │ ├── genomicVariant-MIN-VRS-example.json │ │ │ └── genomicVariant-MIN-example.json │ │ ├── requestParameters.json │ │ └── requestParametersComponents.json │ │ ├── individuals │ │ ├── defaultSchema.json │ │ ├── endpoints.json │ │ └── examples │ │ │ ├── individual-MID-example.json │ │ │ ├── individual-MIN-example.json │ │ │ ├── individual-with-pedigree-MID-example.json │ │ │ └── pedigree-example.json │ │ └── runs │ │ ├── defaultSchema.json │ │ ├── endpoints.json │ │ └── examples │ │ ├── runs-MAX-example.json │ │ └── runs-MIN-example.json └── src │ ├── README.md │ └── beacon-v2-default-model │ ├── analyses │ ├── defaultSchema.yaml │ ├── endpoints.yaml │ └── examples │ │ ├── analyses-MAX-example.yaml │ │ └── analyses-MIN-example.yaml │ ├── beaconConfiguration.yaml │ ├── beaconMap.yaml │ ├── biosamples │ ├── defaultSchema.yaml │ ├── endpoints.yaml │ └── examples │ │ ├── biosample-MID-example.yaml │ │ └── biosample-MIN-example.yaml │ ├── cohorts │ ├── defaultSchema.yaml │ ├── endpoints.yaml │ └── examples │ │ ├── cohorts-MAX-example.yaml │ │ ├── cohorts-MID-example.yaml │ │ └── cohorts-MIN-example.yaml │ ├── common │ ├── age.yaml │ ├── ageRange.yaml │ ├── commonDefinitions.yaml │ ├── complexValue.yaml │ ├── dataUseConditions.yaml │ ├── disease.yaml │ ├── doseInterval.yaml │ ├── evidence.yaml │ ├── exposure.yaml │ ├── externalReference.yaml │ ├── gestationalAge.yaml │ ├── info.yaml │ ├── measurement.yaml │ ├── pedigree.yaml │ ├── phenotypicFeature.yaml │ ├── procedure.yaml │ ├── quantity.yaml │ ├── referenceRange.yaml │ ├── timeElement.yaml │ ├── timeInterval.yaml │ ├── treatment.yaml │ └── value.yaml │ ├── datasets │ ├── defaultSchema.yaml │ ├── endpoints.yaml │ └── examples │ │ ├── dataset-MIN-example.yaml │ │ └── dataset-Max-example.yaml │ ├── endpoints.yaml │ ├── genomicVariations │ ├── defaultSchema.yaml │ ├── endpoints.yaml │ ├── examples │ │ ├── genomicVariant-MID-example.yaml │ │ ├── genomicVariant-MIN-VRS-example.yaml │ │ └── genomicVariant-MIN-example.yaml │ ├── requestParameters.yaml │ └── requestParametersComponents.yaml │ ├── individuals │ ├── defaultSchema.yaml │ ├── endpoints.yaml │ └── examples │ │ ├── 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