├── .babelrc ├── .eslintrc.json ├── .gitignore ├── README.md ├── package.json ├── public ├── GenomePlot.html ├── data │ ├── LNCAP.png │ ├── LNCAP │ │ ├── LNCAP_alts_comprehensive.csv │ │ ├── LNCAP_cnvIntervals.csv │ │ ├── LNCAP_genomePlot_cnv30.json │ │ └── LNCAP_visualization.json │ ├── NA12878.vcf │ ├── NA12878 │ │ ├── NA12878_alts_comprehensive.csv │ │ └── NA12878_visualization.json │ └── vcftoUplot.R └── reference │ └── cytobands │ ├── hg19 │ └── cytoBand.json │ └── hg38 │ └── cytoBand.json ├── src ├── GenomePlot │ ├── GenomePlot.js │ ├── SetupGUI.js │ ├── processAlterationsData.js │ ├── processCopyNumberData.js │ └── processCopyNumberStateData.js ├── css │ └── GenomePlot.css ├── index.js └── local_lib │ ├── domOperations.js │ ├── pathIntersections.js │ ├── prototypes.js │ ├── utils-d3.js │ └── utils.js ├── vendor └── dat-gui │ ├── dat.gui-0.5.1-plus.min.js │ ├── dat.gui.light-theme.css │ └── dat.gui.local.css ├── webpack.config.babel.js └── yarn.lock /.babelrc: 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