├── .github └── workflows │ ├── build.yml │ └── release.yml ├── .gitignore ├── .readthedocs.yml ├── Cell_BLAST ├── __init__.py ├── blast.py ├── config.py ├── data.py ├── directi.py ├── latent.py ├── metrics.py ├── prob.py ├── rebuild.py ├── rmbatch.py ├── utils.py └── weighting.py ├── DataMigration ├── h5_to_h5ad.py └── readme.md ├── LICENSE ├── README.md ├── docs ├── .gitignore ├── BLAST.ipynb ├── DIRECTi.ipynb ├── Makefile ├── README.md ├── _static │ ├── BLAST.html │ ├── DIRECTi.html │ └── flowchart.svg ├── api.rst ├── conf.py ├── index.rst ├── install.rst ├── make.bat ├── migration.rst ├── modules │ ├── Cell_BLAST.blast.rst │ ├── Cell_BLAST.data.rst │ ├── Cell_BLAST.directi.rst │ ├── Cell_BLAST.latent.rst │ ├── Cell_BLAST.prob.rst │ └── Cell_BLAST.rmbatch.rst ├── start.rst └── upload.sh ├── env.yml ├── pyproject.toml ├── setup.py └── test ├── .gitignore ├── dag.obo ├── pollen.h5ad ├── repeatability_test.py ├── test.py ├── test_blast.py ├── test_data.py ├── test_directi.py ├── 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