├── JointGenotypingWf.hg38.inputs.json ├── JointGenotypingWf.md ├── JointGenotypingWf.options.json ├── JointGenotypingWf.wdl ├── LICENSE ├── PairedEndSingleSampleWf-fc-b37.wdl ├── PairedEndSingleSampleWf-fc-hg38.wdl ├── PairedEndSingleSampleWf.hg38.inputs.json ├── PairedEndSingleSampleWf.md ├── PairedEndSingleSampleWf.options.json ├── PairedEndSingleSampleWf.wdl └── README.md /JointGenotypingWf.hg38.inputs.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/JointGenotypingWf.hg38.inputs.json -------------------------------------------------------------------------------- /JointGenotypingWf.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/JointGenotypingWf.md -------------------------------------------------------------------------------- /JointGenotypingWf.options.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/JointGenotypingWf.options.json -------------------------------------------------------------------------------- /JointGenotypingWf.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/JointGenotypingWf.wdl -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/LICENSE -------------------------------------------------------------------------------- /PairedEndSingleSampleWf-fc-b37.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/PairedEndSingleSampleWf-fc-b37.wdl -------------------------------------------------------------------------------- /PairedEndSingleSampleWf-fc-hg38.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/PairedEndSingleSampleWf-fc-hg38.wdl -------------------------------------------------------------------------------- /PairedEndSingleSampleWf.hg38.inputs.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/PairedEndSingleSampleWf.hg38.inputs.json -------------------------------------------------------------------------------- /PairedEndSingleSampleWf.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/PairedEndSingleSampleWf.md -------------------------------------------------------------------------------- /PairedEndSingleSampleWf.options.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/PairedEndSingleSampleWf.options.json -------------------------------------------------------------------------------- /PairedEndSingleSampleWf.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/PairedEndSingleSampleWf.wdl -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/broad-prod-wgs-germline-snps-indels/HEAD/README.md --------------------------------------------------------------------------------