├── LICENSE ├── README.md ├── generic.google-papi.options.json ├── mutect2-normal-normal.inputs.json ├── mutect2-normal-normal.wdl ├── mutect2.inputs.json ├── mutect2.wdl ├── mutect2_pon.inputs.json └── mutect2_pon.wdl /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/HEAD/README.md -------------------------------------------------------------------------------- /generic.google-papi.options.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/HEAD/generic.google-papi.options.json -------------------------------------------------------------------------------- /mutect2-normal-normal.inputs.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/HEAD/mutect2-normal-normal.inputs.json -------------------------------------------------------------------------------- /mutect2-normal-normal.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/HEAD/mutect2-normal-normal.wdl -------------------------------------------------------------------------------- /mutect2.inputs.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/HEAD/mutect2.inputs.json -------------------------------------------------------------------------------- /mutect2.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/HEAD/mutect2.wdl -------------------------------------------------------------------------------- /mutect2_pon.inputs.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/HEAD/mutect2_pon.inputs.json -------------------------------------------------------------------------------- /mutect2_pon.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/gatk4-somatic-snvs-indels/HEAD/mutect2_pon.wdl --------------------------------------------------------------------------------