├── .dockstore.yml ├── LICENSE ├── README.md ├── bam-to-unmapped-bams.inputs.json ├── bam-to-unmapped-bams.wdl ├── cram-to-bam.inputs.json ├── cram-to-bam.wdl ├── generic.google-papi.options.json ├── interleaved-fastq-to-paired-fastq.inputs.json ├── interleaved-fastq-to-paired-fastq.wdl ├── paired-fastq-to-unmapped-bam.inputs.json └── paired-fastq-to-unmapped-bam.wdl /.dockstore.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/.dockstore.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/README.md -------------------------------------------------------------------------------- /bam-to-unmapped-bams.inputs.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/bam-to-unmapped-bams.inputs.json -------------------------------------------------------------------------------- /bam-to-unmapped-bams.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/bam-to-unmapped-bams.wdl -------------------------------------------------------------------------------- /cram-to-bam.inputs.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/cram-to-bam.inputs.json -------------------------------------------------------------------------------- /cram-to-bam.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/cram-to-bam.wdl -------------------------------------------------------------------------------- /generic.google-papi.options.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/generic.google-papi.options.json -------------------------------------------------------------------------------- /interleaved-fastq-to-paired-fastq.inputs.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/interleaved-fastq-to-paired-fastq.inputs.json -------------------------------------------------------------------------------- /interleaved-fastq-to-paired-fastq.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/interleaved-fastq-to-paired-fastq.wdl -------------------------------------------------------------------------------- /paired-fastq-to-unmapped-bam.inputs.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/paired-fastq-to-unmapped-bam.inputs.json -------------------------------------------------------------------------------- /paired-fastq-to-unmapped-bam.wdl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gatk-workflows/seq-format-conversion/HEAD/paired-fastq-to-unmapped-bam.wdl --------------------------------------------------------------------------------