├── .github └── workflows │ ├── ISSUE_TEMPLATE │ ├── bug_report.md │ └── feature_request.md │ ├── build-test.yml │ ├── building-pypi-linux.yml │ ├── bump-version.yml │ └── docs.yml ├── .gitignore ├── CONTRIBUTING.md ├── LICENSE ├── Makefile ├── README.MD ├── cycpd ├── __init__.py ├── affine_registration.py ├── cython │ ├── cython_functions.pyx │ └── vfastexp.h ├── deformable_registration.py ├── expectation_maximization_registration.py └── rigid_registration.py ├── data ├── bunny_source.txt ├── bunny_target.txt ├── fish_source.txt ├── fish_target.txt ├── surface_points_bone_1_5k_points.npy ├── surface_points_bone_2_5k_points.npy ├── surface_points_bone_2_rigid_register_to_1_5k_points.npy └── surface_points_bone_deformable_target.npy ├── docs ├── affine_registration.html ├── deformable_registration.html ├── expectation_maximization_registration.html ├── index.html └── rigid_registration.html ├── examples ├── knee_affine_3D.py ├── knee_deformable_3D.py └── knee_rigid_3D.py ├── gifs ├── 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