├── .Rbuildignore ├── .aspell └── exclude.rds ├── .gitignore ├── DESCRIPTION ├── NAMESPACE ├── R ├── RcppExports.R ├── alpha_diversity.R ├── alpha_workflow.R ├── beta_workflow.R └── utils.R ├── README.md ├── inst └── CITATION ├── man ├── FuncDiv_alpha_metrics.Rd ├── alpha_div_contrib.Rd ├── beta_div_contrib.Rd ├── compute_alpha_div.Rd ├── contrib_to_multitab.Rd ├── func_abun_crossproduct.Rd ├── multitab_to_contrib.Rd └── subset_func_and_abun_tables.Rd ├── src ├── .gitignore ├── RcppExports.cpp ├── prep_data_for_parallelizing.cpp └── rbiom_par_unifrac.cpp └── tests ├── example_files ├── contrib_input.tsv.gz ├── func_input.tsv.gz ├── taxa.tree └── taxa_input.tsv.gz ├── testthat.R └── testthat ├── helper_input_files.R ├── test_alpha_metrics.R ├── test_alpha_workflow.R ├── test_beta_workflow.R └── test_utils.R /.Rbuildignore: -------------------------------------------------------------------------------- 1 | ^LICENSE\.md$ 2 | 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