├── .idea ├── .gitignore ├── deployment.xml ├── inspectionProfiles │ └── profiles_settings.xml ├── kMetaShot.iml ├── misc.xml ├── modules.xml └── webServers.xml ├── LICENSE ├── README.md ├── __init__.py ├── benchmark ├── Parse_HMP_data.ipynb ├── cami2_composition_adjust.py ├── camitax_transform.py ├── command_list.md ├── finishing_cami2_ass2ref_fn2.ipynb ├── gtdbtk_transform.py └── memory_measuring.py ├── conda_recipes ├── meta.yaml └── setup.py ├── docker ├── Dockerfile └── environment.yml ├── kMetaShot_classifier_NV.py ├── kMetaShot_package ├── __init__.py ├── kmer_minimizer_counting_mmh3.py └── reverse_complement.py └── kMetaShot_test.py /.idea/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gdefazio/kMetaShot/HEAD/.idea/.gitignore -------------------------------------------------------------------------------- /.idea/deployment.xml: 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