├── .Rbuildignore ├── .covrignore ├── .gitignore ├── .gitmodules ├── ArcGIS ├── FLUXNET (n=166).lyr ├── Fig1&2_combined.mxd ├── Fig1&2_combined_short.mxd ├── Fig1_fluxnet&phenocam_sites.mxd ├── Fig1_phenoflux115.mxd ├── Fig2_st1e3(16000)_validation_sites.mxd ├── MCD12Q1_2010_006_20.tif.clr ├── MCD12Q1_2010_006_20.tif.lyr ├── Representative sites (n=11).lyr ├── arcpy_sample_representative_points.py ├── shp │ ├── st_1000.cpg │ ├── st_1000.dbf │ ├── st_1000.prj │ ├── st_1000.shp │ ├── st_1000.shx │ ├── st_cam131.dbf │ ├── st_cam131.prj │ ├── st_cam131.shp │ ├── st_cam131.shx │ ├── st_flux101.dbf │ ├── st_flux101.prj │ ├── st_flux101.shp │ ├── st_flux101.shx │ ├── st_flux166.dbf │ ├── st_flux166.prj │ ├── st_flux166.shp │ └── st_flux166.shx └── tiff │ ├── MCD12Q1_2010_006_20_full.tif │ ├── MCD12Q1_2010_006_20_left.tif │ └── MCD12Q1_2010_006_20_masked.tif ├── DESCRIPTION ├── Figures ├── Fig1_fluxnet&phenocam_sites.jpg ├── Fig1_sites_dist.tif ├── Fig2_st1e3(16000)_validation_sites.jpg └── img_merge.m ├── LICENSE ├── LICENSE.md ├── MATLAB ├── HANTS.m ├── HANTS_TSM_rep11_y.txt ├── HANTS_multiYears.m ├── MWHA.jl ├── MWHA.m ├── TSM_CANS6_w.txt ├── TSM_CANS6_y.txt ├── TSM_rep11_SG_y.txt ├── check_wFUN.mlx ├── noise_keypoint_HANTS.m ├── noise_random_HANTS.m ├── parameter_HANTS.m └── src │ ├── MWHA.m.hpp │ ├── MWHA.m.py │ ├── main_m2cpp.bat │ └── mconvert.h ├── NAMESPACE ├── R ├── DATASET.R ├── GLOBAL.R ├── TSF_main.R ├── TSF_main_df.R ├── adjust_envelope.R ├── check_Whittaker.R ├── check_input.R ├── fitSimuNoise_TSF.R ├── fitSimuNoise_WHIT.R ├── gof_fitting.R ├── lambda_init.R ├── lambda_optim.R ├── lambda_vcurve.R ├── main_Ipaper.R ├── plot_fitting.R ├── plot_whit.R ├── reference_curve.R ├── simu_noise.R ├── smooth_WHIT.R ├── smooth_rough.R ├── temp │ ├── over_perform.R │ ├── phenofit_evaluate_droped.R │ └── plot_methods.R ├── tidy_info.R ├── wFUN.R └── whittaker-package.R ├── README.Rmd ├── README.md ├── appveyor.yml ├── data ├── d_ref.rda ├── lst_noise.rda └── mat_ref.rda ├── gee_whittaker.Rproj ├── man ├── GOF_season3y.Rd ├── TSF_main.Rd ├── TSF_main_df.Rd ├── add_noise.Rd ├── adjust_envelope.Rd ├── check_Whittaker.Rd ├── check_input.Rd ├── check_ylu.Rd ├── coef_roughness.Rd ├── d_ref.Rd ├── fill_missdate.Rd ├── fitSimuNoise_TSF.Rd ├── fitSimuNoise_WHIT.Rd ├── get_reference.Rd ├── gof_fitting.Rd ├── lambda_init.Rd ├── lambda_optim.Rd ├── lst_noise.Rd ├── mat_ref.Rd ├── plot_ref.Rd ├── rough_fitting.Rd ├── simu_noise.Rd ├── smooth_WHIT.Rd ├── wFUN.Rd ├── wWHIT.Rd └── whittaker-package.Rd ├── scripts ├── ISPRS │ ├── Fig04_gee_whit_flux11.R │ ├── MODIS_gdal │ │ └── gdal_merge.R │ ├── main_pkgs.R │ ├── s1_reference_curve.R │ ├── s2_2_Roughness.R │ ├── s2_evaluate_performance.R │ ├── s3_performance_summary.R │ ├── s4_parameters_sensitivity.R │ └── whit_lambda │ │ ├── 02_whit_lambda_main.R │ │ ├── 03_whit_lambda_formula.R │ │ ├── check_result.R │ │ └── main_lambda.R ├── main_pkgs.R ├── s1_select_dGS_chinacroppheno_1km.R ├── s2_clipImgCol_by_rgee.R ├── 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