├── GENFIRE_Main.m ├── README.md ├── data ├── angles.mat ├── model.mat ├── projections.mat ├── support.mat ├── support180.mat ├── support180_180_168.mat └── support180_180_90.mat ├── results ├── GENFIRE_rec180_gridDft.mat ├── GENFIRE_rec180_gridOS10.mat ├── GENFIRE_rec180_gridOS25.mat ├── GENFIRE_rec180_gridOS3.mat └── view_script.m └── source ├── FourierShellCorrelate.m ├── GENFIRE_OSS.m ├── GENFIRE_iterate.m ├── GENFIRE_reconstruct.m ├── GENFIRE_reconstruct_subsection.m ├── My_paddzero.m ├── alignByCOMx.m ├── alignByCOMy.m ├── calculate3Dprojection.m ├── calculate3Dprojection_interp.m ├── ctf_correction.m ├── fillInFourierGrid.m ├── fillInFourierGrid_DFT.m ├── fillInFourierGrid_tomo.m ├── hermitianSymmetrize.m ├── makeCircleMask.m ├── make_Kspace_indices.m ├── my_fft.m ├── my_ifft.m └── smooth3D.m /GENFIRE_Main.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/GENFIRE_Main.m -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/README.md -------------------------------------------------------------------------------- /data/angles.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/data/angles.mat -------------------------------------------------------------------------------- /data/model.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/data/model.mat -------------------------------------------------------------------------------- /data/projections.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/data/projections.mat -------------------------------------------------------------------------------- /data/support.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/data/support.mat -------------------------------------------------------------------------------- /data/support180.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/data/support180.mat -------------------------------------------------------------------------------- /data/support180_180_168.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/data/support180_180_168.mat -------------------------------------------------------------------------------- /data/support180_180_90.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/data/support180_180_90.mat -------------------------------------------------------------------------------- /results/GENFIRE_rec180_gridDft.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/results/GENFIRE_rec180_gridDft.mat -------------------------------------------------------------------------------- /results/GENFIRE_rec180_gridOS10.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/results/GENFIRE_rec180_gridOS10.mat -------------------------------------------------------------------------------- /results/GENFIRE_rec180_gridOS25.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/results/GENFIRE_rec180_gridOS25.mat -------------------------------------------------------------------------------- /results/GENFIRE_rec180_gridOS3.mat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/results/GENFIRE_rec180_gridOS3.mat -------------------------------------------------------------------------------- /results/view_script.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/results/view_script.m -------------------------------------------------------------------------------- /source/FourierShellCorrelate.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/FourierShellCorrelate.m -------------------------------------------------------------------------------- /source/GENFIRE_OSS.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/GENFIRE_OSS.m -------------------------------------------------------------------------------- /source/GENFIRE_iterate.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/GENFIRE_iterate.m -------------------------------------------------------------------------------- /source/GENFIRE_reconstruct.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/GENFIRE_reconstruct.m -------------------------------------------------------------------------------- /source/GENFIRE_reconstruct_subsection.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/GENFIRE_reconstruct_subsection.m -------------------------------------------------------------------------------- /source/My_paddzero.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/My_paddzero.m -------------------------------------------------------------------------------- /source/alignByCOMx.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/alignByCOMx.m -------------------------------------------------------------------------------- /source/alignByCOMy.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/alignByCOMy.m -------------------------------------------------------------------------------- /source/calculate3Dprojection.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/calculate3Dprojection.m -------------------------------------------------------------------------------- /source/calculate3Dprojection_interp.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/calculate3Dprojection_interp.m -------------------------------------------------------------------------------- /source/ctf_correction.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/ctf_correction.m -------------------------------------------------------------------------------- /source/fillInFourierGrid.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/fillInFourierGrid.m -------------------------------------------------------------------------------- /source/fillInFourierGrid_DFT.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/fillInFourierGrid_DFT.m -------------------------------------------------------------------------------- /source/fillInFourierGrid_tomo.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/fillInFourierGrid_tomo.m -------------------------------------------------------------------------------- /source/hermitianSymmetrize.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/hermitianSymmetrize.m -------------------------------------------------------------------------------- /source/makeCircleMask.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/makeCircleMask.m -------------------------------------------------------------------------------- /source/make_Kspace_indices.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/make_Kspace_indices.m -------------------------------------------------------------------------------- /source/my_fft.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/my_fft.m -------------------------------------------------------------------------------- /source/my_ifft.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/my_ifft.m -------------------------------------------------------------------------------- /source/smooth3D.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genfire-em/GENFIRE-MATLAB/HEAD/source/smooth3D.m --------------------------------------------------------------------------------