├── .bumpversion.cfg ├── .coveragerc ├── .github ├── dependabot.yml └── workflows │ ├── build-api.yml │ ├── build-blobtoolkit-dependencies.yml │ ├── build-blobtoolkit.yml │ ├── build-ui.yml │ ├── changes.yml │ ├── conditional-workflow.yml │ ├── github-release.yml │ ├── package-api.yml │ ├── package-blobtools.yml │ ├── package-host.yml │ ├── package-pipeline.yml │ ├── package-ui.yml │ ├── update-dependencies.yml │ └── upload-to-pypi.yml ├── .gitignore ├── .hostbumpversion.cfg ├── .pipelinebumpversion.cfg ├── .pre-commit-config.yaml ├── .prebumpversion.cfg ├── .pylintrc ├── .pylintrc_tests ├── .travis.yml ├── AUTHORS ├── LICENSE ├── MANIFEST.in ├── README.md ├── bump_full_version.sh ├── bump_npm_version.sh ├── bump_versions.sh ├── conftest.py ├── databases ├── README.md ├── blast │ └── README.md ├── busco │ ├── README.md │ ├── archaea_odb10.tar.gz │ ├── bacteria_odb10.tar.gz │ ├── eukaryota_odb10.tar.gz │ └── metazoa_odb10.tar.gz └── uniprot │ ├── README.md │ ├── all.dmnd │ ├── gfLaeSulp1.1.buscogenes.dmnd │ ├── gfLaeSulp1.1.buscoregions.dmnd │ ├── ilEraDefo1.1.buscogenes.dmnd │ ├── ilEraDefo1.1.buscoregions.dmnd │ ├── mCerEla1.1.buscogenes.dmnd │ ├── mCerEla1.1.buscoregions.dmnd │ ├── mMelMel3.1.buscogenes.dmnd │ └── mMelMel3.1.buscoregions.dmnd ├── examples ├── assembly.fasta ├── assembly.reads.bam ├── blast.out ├── blobDB.json ├── busco.tsv ├── diamond.out ├── list.json ├── meta.yaml ├── reads_1.fq.gz └── reads_2.fq.gz ├── package-api.sh ├── package-ui.sh ├── pip_install_latest.sh ├── pipeline.mermaid ├── pre-commit.sh ├── pyproject.toml ├── requirements.txt ├── run_tests.sh ├── setup.cfg ├── setup.py ├── src ├── api │ ├── .env.dist │ ├── api.md │ ├── default.json.dist │ ├── package-lock.json │ ├── package.json │ ├── package.sh │ ├── scripts │ │ └── build-target-tree.mjs │ └── src │ │ ├── api-spec.yaml │ │ ├── app.js │ │ ├── app.test.js │ │ ├── config │ │ ├── main.js │ │ └── swagger.js │ │ ├── functions │ │ ├── io.js │ │ ├── io.spec.js │ │ └── logger.js │ │ ├── models │ │ ├── dataset.js │ │ ├── dataset.spec.js │ │ ├── field.js │ │ ├── field.spec.js │ │ ├── repository.js │ │ └── repository.spec.js │ │ ├── public │ │ └── index.html │ │ ├── routes │ │ ├── dataset.js │ │ ├── field.js │ │ ├── identifier.js │ │ ├── image.js │ │ ├── search.js │ │ ├── search_routes.js │ │ ├── status.js │ │ ├── summary.js │ │ └── table.js │ │ ├── server.js │ │ └── shared │ │ ├── functions │ │ ├── utils.js │ │ └── utils.spec.js │ │ └── models │ │ ├── dataset.js │ │ ├── field.js │ │ ├── filter.js │ │ ├── filter.spec.js │ │ ├── repository.js │ │ └── repository.spec.js ├── blobtoolkit-host │ ├── MANIFEST.in │ ├── pip_install_latest.sh │ ├── pyproject.toml │ ├── requirements.txt │ ├── setup.py │ └── src │ │ ├── __init__.py │ │ ├── __main__.py │ │ ├── blobtoolkit_host.py │ │ └── lib │ │ ├── __init__.py │ │ ├── host.py │ │ └── version.py ├── blobtoolkit-pipeline │ ├── MANIFEST.in │ ├── pip_install_latest.sh │ ├── pyproject.toml │ ├── requirements.txt │ ├── setup.py │ └── src │ │ ├── README.md │ │ ├── __init__.py │ │ ├── blobtoolkit-snakefiles │ │ ├── add_reads.smk │ │ ├── blastn.smk │ │ ├── blobtoolkit.smk │ │ ├── blobtools.smk │ │ ├── busco.smk │ │ ├── chunk_stats.smk │ │ ├── cov_stats.smk │ │ ├── diamond.smk │ │ ├── diamond_blastp.smk │ │ ├── minimap.smk │ │ ├── rules │ │ │ ├── _transfer_dataset.smk │ │ │ ├── add_cov_to_tsv.smk │ │ │ ├── add_summary_to_metadata.smk │ │ │ ├── checksum_files.smk │ │ │ ├── chunk_fasta.smk │ │ │ ├── chunk_fasta_by_busco.smk │ │ │ ├── chunk_nohit_fasta.smk │ │ │ ├── combine_stats.smk │ │ │ ├── count_busco_genes.smk │ │ │ ├── extract_busco_genes.smk │ │ │ ├── extract_nohit_fasta.smk │ │ │ ├── generate_images.smk │ │ │ ├── generate_summary.smk │ │ │ ├── get_chunked_stats.smk │ │ │ ├── get_window_stats.smk │ │ │ ├── run_bamtools_stats.smk │ │ │ ├── run_blastn.smk │ │ │ ├── run_blobtk_depth.smk │ │ │ ├── run_blobtools_add.smk │ │ │ ├── run_blobtools_create.smk │ │ │ ├── run_busco5.smk │ │ │ ├── run_diamond_blastp.smk │ │ │ ├── run_diamond_blastx.smk │ │ │ ├── run_minimap2_align.smk │ │ │ ├── run_minimap2_index.smk │ │ │ ├── run_mosdepth.smk │ │ │ ├── run_sub_pipeline.smk │ │ │ ├── run_windowmasker.smk │ │ │ ├── skip_windowmasker.smk │ │ │ ├── unchunk_blastn.smk │ │ │ ├── unchunk_blastx.smk │ │ │ ├── unzip_assembly_fasta.smk │ │ │ └── validate_dataset.smk │ │ ├── view.smk │ │ ├── window_stats.smk │ │ └── windowmasker.smk │ │ ├── blobtoolkit_pipeline.py │ │ └── lib │ │ ├── __init__.py │ │ ├── add_summary_to_metadata.py │ │ ├── chunk_fasta.py │ │ ├── count_busco_genes.py │ │ ├── data.py │ │ ├── extract_busco_genes.py │ │ ├── functions.py │ │ ├── generate_config.py │ │ ├── generate_configs.sh │ │ ├── generate_static_images.py │ │ ├── lsf_wrapper.sh │ │ ├── resume_pipeline.py │ │ ├── run.py │ │ ├── run_btk_pipeline.sh │ │ ├── track_bioproject_accessions.py │ │ ├── transfer_completed.py │ │ ├── unchunk_blast.py │ │ ├── version.py │ │ └── window_stats.py ├── blobtools │ ├── __init__.py │ ├── __main__.py │ ├── blobtools.py │ └── lib │ │ ├── __init__.py │ │ ├── add.py │ │ ├── bed.py │ │ ├── blob_db.py │ │ ├── busco.py │ │ ├── calc.py │ │ ├── cov.py │ │ ├── dataset.py │ │ ├── fasta.py │ │ ├── fetch.py │ │ ├── field.py │ │ ├── file_io.py │ │ ├── filter.py │ │ ├── hits.py │ │ ├── host.py │ │ ├── key.py │ │ ├── link.py │ │ ├── remove.py │ │ ├── synonyms.py │ │ ├── taxdump.py │ │ ├── taxid.py │ │ ├── text.py │ │ ├── trnascan.py │ │ ├── validate.py │ │ ├── version.py │ │ └── view.py ├── btk │ ├── __init__.py │ ├── __main__.py │ ├── btk.py │ └── lib │ │ ├── pipeline.py │ │ └── version.py ├── data │ ├── .bumpversion.cfg │ ├── MANIFEST.in │ ├── example │ │ └── FXWY01 │ │ │ ├── ERR1656467_cov.json │ │ │ ├── ERR1656467_read_cov.json │ │ │ ├── bestsumorder_class.json │ │ │ ├── bestsumorder_class_cindex.json │ │ │ ├── bestsumorder_class_positions.json │ │ │ ├── bestsumorder_class_score.json │ │ │ ├── bestsumorder_family.json │ │ │ ├── bestsumorder_family_cindex.json │ │ │ ├── bestsumorder_family_positions.json │ │ │ ├── bestsumorder_family_score.json │ │ │ ├── bestsumorder_genus.json │ │ │ ├── bestsumorder_genus_cindex.json │ │ │ ├── bestsumorder_genus_positions.json │ │ │ ├── bestsumorder_genus_score.json │ │ │ ├── bestsumorder_kingdom.json │ │ │ ├── bestsumorder_kingdom_cindex.json │ │ │ ├── bestsumorder_kingdom_positions.json │ │ │ ├── bestsumorder_kingdom_score.json │ │ │ ├── bestsumorder_order.json │ │ │ ├── bestsumorder_order_cindex.json │ │ │ ├── bestsumorder_order_positions.json │ │ │ ├── bestsumorder_order_score.json │ │ │ ├── bestsumorder_phylum.json │ │ │ ├── bestsumorder_phylum_cindex.json │ │ │ ├── bestsumorder_phylum_positions.json │ │ │ ├── bestsumorder_phylum_score.json │ │ │ ├── bestsumorder_positions.json │ │ │ ├── bestsumorder_species.json │ │ │ ├── bestsumorder_species_cindex.json │ │ │ ├── bestsumorder_species_positions.json │ │ │ ├── bestsumorder_species_score.json │ │ │ ├── bestsumorder_superkingdom.json │ │ │ ├── bestsumorder_superkingdom_cindex.json │ │ │ ├── bestsumorder_superkingdom_positions.json │ │ │ ├── bestsumorder_superkingdom_score.json │ │ │ ├── eukaryota_odb9_busco.json │ │ │ ├── gc.json │ │ │ ├── identifiers.json │ │ │ ├── length.json │ │ │ ├── meta.json │ │ │ ├── metazoa_odb9_busco.json │ │ │ ├── ncount.json │ │ │ └── nematoda_odb9_busco.json │ ├── pip_install_latest.sh │ ├── pyproject.toml │ ├── requirements.txt │ ├── schema │ │ ├── basic.schema.json │ │ ├── meta.schema.json │ │ └── subschemas │ │ │ ├── array.data.schema.json │ │ │ ├── array.meta.schema.json │ │ │ ├── assembly.basic.schema.json │ │ │ ├── assembly.schema.json │ │ │ ├── category.data.schema.json │ │ │ ├── category.meta.schema.json │ │ │ ├── fields.schema.json │ │ │ ├── identifier.data.schema.json │ │ │ ├── identifier.meta.schema.json │ │ │ ├── multiarray.data.schema.json │ │ │ ├── multiarray.meta.schema.json │ │ │ ├── plot.schema.json │ │ │ ├── reads.schema.json │ │ │ ├── taxon.basic.schema.json │ │ │ ├── taxon.schema.json │ │ │ ├── variable.data.schema.json │ │ │ └── variable.meta.schema.json │ └── setup.py ├── demo │ ├── FXWY01 │ │ ├── ERR1656467_cov.json │ │ ├── ERR1656467_read_cov.json │ │ ├── bestsumorder_class.json │ │ ├── bestsumorder_class_cindex.json │ │ ├── bestsumorder_class_positions.json │ │ ├── bestsumorder_class_score.json │ │ ├── bestsumorder_family.json │ │ ├── bestsumorder_family_cindex.json │ │ ├── bestsumorder_family_positions.json │ │ ├── bestsumorder_family_score.json │ │ ├── bestsumorder_genus.json │ │ ├── bestsumorder_genus_cindex.json │ │ ├── bestsumorder_genus_positions.json │ │ ├── bestsumorder_genus_score.json │ │ ├── bestsumorder_kingdom.json │ │ ├── bestsumorder_kingdom_cindex.json │ │ ├── bestsumorder_kingdom_positions.json │ │ ├── bestsumorder_kingdom_score.json │ │ ├── bestsumorder_order.json │ │ ├── bestsumorder_order_cindex.json │ │ ├── bestsumorder_order_positions.json │ │ ├── bestsumorder_order_score.json │ │ ├── bestsumorder_phylum.json │ │ ├── bestsumorder_phylum_cindex.json │ │ ├── bestsumorder_phylum_positions.json │ │ ├── bestsumorder_phylum_score.json │ │ ├── bestsumorder_positions.json │ │ ├── bestsumorder_species.json │ │ ├── bestsumorder_species_cindex.json │ │ ├── bestsumorder_species_positions.json │ │ ├── bestsumorder_species_score.json │ │ ├── bestsumorder_superkingdom.json │ │ ├── bestsumorder_superkingdom_cindex.json │ │ ├── bestsumorder_superkingdom_positions.json │ │ ├── bestsumorder_superkingdom_score.json │ │ ├── eukaryota_odb9_busco.json │ │ ├── gc.json │ │ ├── identifiers.json │ │ ├── length.json │ │ ├── meta.json │ │ ├── metazoa_odb9_busco.json │ │ ├── ncount.json │ │ └── nematoda_odb9_busco.json │ └── generate_btk_plots.sh ├── docker │ ├── Dockerfile │ ├── api │ │ ├── .env │ │ └── Dockerfile │ ├── blobtools │ │ ├── Dockerfile │ │ └── env.yaml │ ├── build_tests.py │ ├── dependencies │ │ ├── Dockerfile │ │ ├── env.yaml │ │ ├── setup.sh │ │ └── startup.sh │ ├── env.yaml │ ├── setup.sh │ ├── startup.sh │ └── viewer │ │ ├── .env │ │ └── Dockerfile ├── packaged-viewer │ ├── package-lock.json │ ├── package.json │ ├── package.sh │ └── src │ │ └── app.js └── viewer │ ├── .babelrc │ ├── .bumpversion.cfg │ ├── .env.dist │ ├── .prettierignore │ ├── AUTHORS │ ├── CHANGELOG.md │ ├── INSTALL.md │ ├── LICENSE │ ├── README.md │ ├── package-lock.json │ ├── package.json │ ├── package.sh │ ├── postcss.config.js │ ├── src │ ├── client │ │ ├── favicon │ │ │ ├── android-chrome-192x192.png │ │ │ ├── android-chrome-512x512.png │ │ │ ├── apple-touch-icon.png │ │ │ ├── favicon-16x16.png │ │ │ ├── favicon-32x32.png │ │ │ ├── favicon.ico │ │ │ └── manifest.json │ │ ├── index.html │ │ ├── main.js │ │ └── views │ │ │ ├── actions │ │ │ └── dataset.js │ │ │ ├── components │ │ │ ├── App.jsx │ │ │ ├── App.scss │ │ │ ├── AxisTitle.jsx │ │ │ ├── BTKLogos.jsx │ │ │ ├── Busco.jsx │ │ │ ├── BuscoData.jsx │ │ │ ├── BuscoPlot.jsx │ │ │ ├── CanvasCircle.jsx │ │ │ ├── Caption.scss │ │ │ ├── CategoryDistribution.jsx │ │ │ ├── CategoryLegend.jsx │ │ │ ├── CategoryPlotBoundary.jsx │ │ │ ├── CircleAxis.jsx │ │ │ ├── CumulativePlot.jsx │ │ │ ├── CumulativePlotBoundary.jsx │ │ │ ├── Customise.scss │ │ │ ├── CustomiseDatasetTable.jsx │ │ │ ├── DOIBadge.jsx │ │ │ ├── Dataset.jsx │ │ │ ├── DatasetApplyFilters.jsx │ │ │ ├── DatasetCreateList.jsx │ │ │ ├── DatasetModal.jsx │ │ │ ├── DatasetSpinner.jsx │ │ │ ├── DatasetTable.jsx │ │ │ ├── DatasetTableCSV.jsx │ │ │ ├── DatasetTree.jsx │ │ │ ├── Datasets.scss │ │ │ ├── DetailPlot.jsx │ │ │ ├── Error.jsx │ │ │ ├── ExportButton.jsx │ │ │ ├── ExternalLink.jsx │ │ │ ├── FAQ.scss │ │ │ ├── FAQs.jsx │ │ │ ├── Field.jsx │ │ │ ├── FieldBox.jsx │ │ │ ├── FieldBoxHeader.jsx │ │ │ ├── FieldBoxHeaderButton.jsx │ │ │ ├── FieldBoxHeaderFilterButtons.jsx │ │ │ ├── FieldRawDataPreview.jsx │ │ │ ├── FieldSet.jsx │ │ │ ├── Fields.scss │ │ │ ├── FigureCaption.jsx │ │ │ ├── Filter.jsx │ │ │ ├── FilterBox.jsx │ │ │ ├── FilterBoxHeader.jsx │ │ │ ├── FilterCategory.jsx │ │ │ ├── FilterControlCategory.jsx │ │ │ ├── FilterControlRange.jsx │ │ │ ├── FilterDisplayCategory.jsx │ │ │ ├── FilterDisplayRange.jsx │ │ │ ├── FilterPreview.jsx │ │ │ ├── Filters.jsx │ │ │ ├── Filters.scss │ │ │ ├── FindDatasets.jsx │ │ │ ├── GetStarted.jsx │ │ │ ├── Header.jsx │ │ │ ├── HomePage.jsx │ │ │ ├── HomePage.scss │ │ │ ├── Icon.scss │ │ │ ├── LassoSelect.jsx │ │ │ ├── Layout.jsx │ │ │ ├── Layout.scss │ │ │ ├── LayoutControls.jsx │ │ │ ├── LayoutHeader.jsx │ │ │ ├── LayoutPlots.jsx │ │ │ ├── Link.jsx │ │ │ ├── ListModal.jsx │ │ │ ├── Main.jsx │ │ │ ├── MainPlot.jsx │ │ │ ├── MainPlotBoundary.jsx │ │ │ ├── Menu.scss │ │ │ ├── MenuDataset.jsx │ │ │ ├── MenuDatasetMain.jsx │ │ │ ├── MenuDisplayKite.jsx │ │ │ ├── MenuDisplayMain.jsx │ │ │ ├── MenuDisplaySet.jsx │ │ │ ├── MenuDisplaySimple.jsx │ │ │ ├── MenuFilterMain.jsx │ │ │ ├── MenuHelpMain.jsx │ │ │ ├── MenuItem.jsx │ │ │ ├── MenuList.jsx │ │ │ ├── MenuListUpload.jsx │ │ │ ├── MenuListsMain.jsx │ │ │ ├── MenuSummary.jsx │ │ │ ├── MenuSummaryMain.jsx │ │ │ ├── MenuSwitchView.jsx │ │ │ ├── NoBlobWarning.jsx │ │ │ ├── NoHitWarning.jsx │ │ │ ├── NoPlot.jsx │ │ │ ├── NumericInput.jsx │ │ │ ├── Palette.jsx │ │ │ ├── Palette.scss │ │ │ ├── PaletteSwatch.jsx │ │ │ ├── Palettes.jsx │ │ │ ├── Plot.scss │ │ │ ├── PlotAxisTitle.jsx │ │ │ ├── PlotBubble.jsx │ │ │ ├── PlotBubbleSVG.jsx │ │ │ ├── PlotBubbles.jsx │ │ │ ├── PlotBubblesCanvas.jsx │ │ │ ├── PlotBubblesCanvasLayers.jsx │ │ │ ├── PlotBubblesSVG.jsx │ │ │ ├── PlotBubblesSVGLayers.jsx │ │ │ ├── PlotGridBoundary.jsx │ │ │ ├── PlotGridSVG.jsx │ │ │ ├── PlotHexBinSVG.jsx │ │ │ ├── PlotHexBinsSVG.jsx │ │ │ ├── PlotHexGridSVG.jsx │ │ │ ├── PlotKitesSVG.jsx │ │ │ ├── PlotLayer.jsx │ │ │ ├── PlotLayerTab.jsx │ │ │ ├── PlotLayerTabs.jsx │ │ │ ├── PlotLegend.jsx │ │ │ ├── PlotLinesSVG.jsx │ │ │ ├── PlotMissing.jsx │ │ │ ├── PlotParameters.jsx │ │ │ ├── PlotRefKitesSVG.jsx │ │ │ ├── PlotSideBinsSVG.jsx │ │ │ ├── PlotSquareBinSVG.jsx │ │ │ ├── PlotSquareBinsSVG.jsx │ │ │ ├── PlotSquareGridSVG.jsx │ │ │ ├── PlotTransformLines.jsx │ │ │ ├── PreviewBar.jsx │ │ │ ├── PreviewBars.jsx │ │ │ ├── PreviewPlotBoundary.jsx │ │ │ ├── RecordModal.jsx │ │ │ ├── ReferenceAssembliesList.jsx │ │ │ ├── Repository.jsx │ │ │ ├── Repository.scss │ │ │ ├── RepositoryDataset.jsx │ │ │ ├── RepositoryDatasetList.jsx │ │ │ ├── Routes.jsx │ │ │ ├── SVGIcon.jsx │ │ │ ├── Search.jsx │ │ │ ├── Search.scss │ │ │ ├── SelectWarning.jsx │ │ │ ├── SnailPlot.jsx │ │ │ ├── SnailPlotLegend.jsx │ │ │ ├── SnailPlotScale.jsx │ │ │ ├── Spinner.jsx │ │ │ ├── Spinner.scss │ │ │ ├── StaticBusco.jsx │ │ │ ├── StaticBuscoData.jsx │ │ │ ├── StaticBuscoPlot.jsx │ │ │ ├── StaticMissing.jsx │ │ │ ├── StaticPlot.jsx │ │ │ ├── StaticWarning.jsx │ │ │ ├── Suggestions.jsx │ │ │ ├── TableCSV.jsx │ │ │ ├── TablePlot.jsx │ │ │ ├── TextIcon.jsx │ │ │ ├── Timeout.jsx │ │ │ ├── ToolTips.jsx │ │ │ ├── TransformEquation.jsx │ │ │ ├── Tree.scss │ │ │ ├── TreeMapPlot.jsx │ │ │ ├── XPlot.jsx │ │ │ ├── YPlot.jsx │ │ │ ├── _colors.scss │ │ │ ├── _web-fonts.scss │ │ │ ├── img │ │ │ │ ├── bbsrc-logo.png │ │ │ │ ├── ebi-logo.png │ │ │ │ ├── ena-logo.png │ │ │ │ ├── figure1.jpg │ │ │ │ ├── figure2.jpg │ │ │ │ ├── hex_blur.jpg │ │ │ │ ├── sanger-logo.png │ │ │ │ └── uoe-logo.png │ │ │ ├── style │ │ │ │ └── node_modules.css │ │ │ └── svg │ │ │ │ ├── adjust.svg │ │ │ │ ├── category.svg │ │ │ │ ├── center.svg │ │ │ │ ├── circleShape.svg │ │ │ │ ├── circleStyle.svg │ │ │ │ ├── clone.svg │ │ │ │ ├── count.svg │ │ │ │ ├── ellipsis.svg │ │ │ │ ├── fontSize.svg │ │ │ │ ├── gridShape.svg │ │ │ │ ├── hexShape.svg │ │ │ │ ├── histogramStyle.svg │ │ │ │ ├── invert.svg │ │ │ │ ├── invertSelection.svg │ │ │ │ ├── kiteShape.svg │ │ │ │ ├── kiteSolid.svg │ │ │ │ ├── lineShape.svg │ │ │ │ ├── lineStyle.svg │ │ │ │ ├── linear.svg │ │ │ │ ├── log.svg │ │ │ │ ├── max.svg │ │ │ │ ├── mean.svg │ │ │ │ ├── min.svg │ │ │ │ ├── mixedStyle.svg │ │ │ │ ├── scale.svg │ │ │ │ ├── selectAll.svg │ │ │ │ ├── selectNone.svg │ │ │ │ ├── show.svg │ │ │ │ ├── showHide.svg │ │ │ │ ├── sqrt.svg │ │ │ │ ├── squareShape.svg │ │ │ │ ├── sum.svg │ │ │ │ ├── sumActive.svg │ │ │ │ ├── svg.svg │ │ │ │ ├── test.svg │ │ │ │ ├── weather.svg │ │ │ │ ├── xAxis.svg │ │ │ │ ├── xLetter.svg │ │ │ │ ├── yAxis.svg │ │ │ │ ├── yLetter.svg │ │ │ │ ├── zAxis.svg │ │ │ │ └── zero.svg │ │ │ ├── containers │ │ │ └── Palettes.jsx │ │ │ ├── index.jsx │ │ │ ├── layouts │ │ │ └── default.jsx │ │ │ ├── querySync.jsx │ │ │ ├── reducers │ │ │ ├── api.js │ │ │ ├── color.js │ │ │ ├── dataset.js │ │ │ ├── datasetTable.js │ │ │ ├── datasetTree.js │ │ │ ├── dimension.js │ │ │ ├── field.js │ │ │ ├── filter.js │ │ │ ├── gdpr.js │ │ │ ├── hexFunctions.js │ │ │ ├── history.js │ │ │ ├── identifiers.js │ │ │ ├── list.js │ │ │ ├── location.js │ │ │ ├── plot.js │ │ │ ├── plotData.js │ │ │ ├── plotHexBins.js │ │ │ ├── plotOverlay.js │ │ │ ├── plotParameters.js │ │ │ ├── plotSquareBins.js │ │ │ ├── plotStyles.js │ │ │ ├── preview.js │ │ │ ├── record.js │ │ │ ├── reference.js │ │ │ ├── repository.js │ │ │ ├── root.js │ │ │ ├── select.js │ │ │ ├── selectTools.js │ │ │ ├── selectorCreators.js │ │ │ ├── summary.js │ │ │ └── tracking.js │ │ │ └── store.jsx │ ├── config │ │ ├── client.js │ │ ├── environment.js │ │ ├── main.js │ │ └── swagger.js │ └── public │ │ └── index.html │ └── webpack.config.js ├── tests ├── files │ ├── TEST │ │ ├── gc.json │ │ ├── identifiers.json │ │ ├── length.json │ │ ├── meta.json │ │ └── ncount.json │ ├── UELW01.busco.actinopterygii_odb10.tsv │ ├── infile │ └── infile.gz └── unit_tests │ ├── test_field.py │ ├── test_file_io.py │ ├── test_taxdump.py │ └── test_taxid.py ├── tmp.tsv ├── tox.ini └── update_wiki.sh /.bumpversion.cfg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomehubs/blobtoolkit/HEAD/.bumpversion.cfg -------------------------------------------------------------------------------- /.coveragerc: 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