├── .dockerignore ├── .gitattributes ├── .gitignore ├── .travis.yml ├── LICENSE ├── Makefile ├── README.md ├── RELEASE ├── VERSION ├── c ├── .gitignore ├── CMakeLists.txt ├── Makefile ├── cmake_uninstall.cmake.in ├── doc │ ├── CMakeLists.txt │ └── Doxyfile ├── resources │ ├── debian │ │ ├── changelog │ │ ├── compat │ │ ├── control │ │ ├── copyright │ │ ├── rules │ │ └── source │ │ │ └── format │ └── rpm │ │ └── rpm.spec ├── src │ └── variantkey │ │ ├── CMakeLists.txt │ │ ├── binsearch.h │ │ ├── esid.h │ │ ├── genoref.h │ │ ├── hex.h │ │ ├── nrvk.h │ │ ├── regionkey.h │ │ ├── rsidvar.h │ │ ├── set.h │ │ └── variantkey.h ├── test │ ├── CMakeLists.txt │ ├── data │ │ ├── genoref.bin │ │ ├── genoref.fa │ │ ├── nrvk.10.bin │ │ ├── nrvk.10.unsorted.tsv │ │ ├── rsvk.10.bin │ │ ├── rsvk.10.hex │ │ ├── rsvk.m.10.bin │ │ ├── rsvk.m.10.hex │ │ ├── rsvk.sorted.10.hex │ │ ├── rsvk.sorted.m.10.hex │ │ ├── rsvk.unsorted.10.hex │ │ ├── rsvk.unsorted.m.10.hex │ │ ├── test_data.bin │ │ ├── test_data.hex │ │ ├── test_data_arrow.bin │ │ ├── test_data_binsrc.bin │ │ ├── test_data_binsrc.hex │ │ ├── test_data_col.bin │ │ ├── test_data_col.hex │ │ ├── test_data_feather.bin │ │ ├── vkrs.10.bin │ │ ├── vkrs.10.hex │ │ ├── vkrs.sorted.10.hex │ │ └── vkrs.unsorted.10.hex │ ├── rsidvar_bench │ │ ├── CMakeLists.txt │ │ └── rsidvar_bench.c │ ├── test_binsearch.c │ ├── test_binsearch_col.c │ ├── test_binsearch_file.c │ ├── test_esid.c │ ├── test_example.c │ ├── test_genoref.c │ ├── test_hex.c │ ├── test_nrvk.c │ ├── test_regionkey.c │ ├── test_rsidvar.c │ ├── test_set.c │ └── test_variantkey.c └── vk │ ├── CMakeLists.txt │ └── vk.c ├── conda ├── c.src │ ├── build.sh │ └── meta.yaml ├── c.vk │ ├── build.sh │ └── meta.yaml ├── channels.mk ├── python-class │ ├── build.sh │ ├── meta.yaml │ └── run_test.sh ├── python │ ├── build.sh │ ├── meta.yaml │ └── run_test.sh ├── r │ ├── build.sh │ ├── meta.yaml │ └── run_test.sh └── setup-conda.sh ├── docker ├── dev │ └── Dockerfile └── scripts │ ├── install-common.sh │ ├── install-python-pyvariantkey.sh │ └── install-python-variantkey.sh ├── dockerbuild.sh ├── go ├── .gitignore ├── Makefile ├── example │ └── main.go └── src │ ├── esid_test.go │ ├── genoref_test.go │ ├── main_test.go │ ├── nrvk_test.go │ ├── regionkey_test.go │ ├── rsidvar_test.go │ ├── variantkey.go │ └── variantkey_test.go ├── javascript ├── .gitignore ├── Makefile ├── src │ └── variantkey.js └── test │ ├── test_esid.js │ ├── test_regionkey.js │ └── test_variantkey.js ├── python-class ├── .gitattributes ├── .gitignore ├── MANIFEST.in ├── Makefile ├── pyvariantkey │ ├── __init__.py │ └── variantkey.py ├── setup.cfg ├── setup.py └── test │ ├── __init__.py │ ├── example.py │ ├── test_esid.py │ ├── test_file_errors.py │ ├── test_genoref.py │ ├── test_nrvk.py │ ├── test_regionkey.py │ ├── test_rsidvar.py │ └── test_variantkey.py ├── python ├── .gitignore ├── MANIFEST.in ├── Makefile ├── setup.cfg ├── setup.py ├── test │ ├── example.py │ ├── test_esid.py │ ├── test_genoref.py │ ├── test_nrvk.py │ ├── test_regionkey.py │ ├── test_rsidvar.py │ └── test_variantkey.py └── variantkey │ ├── pyvariantkey.c │ └── pyvariantkey.h ├── r ├── .gitignore ├── Makefile ├── example │ └── example.R └── variantkey │ ├── .Rbuildignore │ ├── DESCRIPTION │ ├── NAMESPACE │ ├── R │ ├── hex64.R │ ├── uint64.R │ └── variantkey.R │ ├── man │ ├── AreOverlappingRegionKeys.Rd │ ├── AreOverlappingRegionRegionKey.Rd │ ├── AreOverlappingRegions.Rd │ ├── AreOverlappingVariantKeyRegionKey.Rd │ ├── CheckReference.Rd │ ├── CloseVariantKey.Rd │ ├── CompareVariantKeyChrom.Rd │ ├── CompareVariantKeyChromPos.Rd │ ├── DecodeChrom.Rd │ ├── DecodeRefAlt.Rd │ ├── DecodeRegionKey.Rd │ ├── DecodeRegionStrand.Rd │ ├── DecodeStringID.Rd │ ├── DecodeVariantKey.Rd │ ├── EncodeChrom.Rd │ ├── EncodeRefAlt.Rd │ ├── EncodeRegionKey.Rd │ ├── EncodeRegionStrand.Rd │ ├── EncodeStringID.Rd │ ├── EncodeStringNumID.Rd │ ├── EncodeVariantKey.Rd │ ├── ExtendRegionKey.Rd │ ├── ExtractRegionKeyChrom.Rd │ ├── ExtractRegionKeyEndPos.Rd │ ├── ExtractRegionKeyStartPos.Rd │ ├── ExtractRegionKeyStrand.Rd │ ├── ExtractVariantKeyChrom.Rd │ ├── ExtractVariantKeyPos.Rd │ ├── ExtractVariantKeyRefAlt.Rd │ ├── FindAllRvVariantKeyByRsid.Rd │ ├── FindAllVrRsidByVariantKey.Rd │ ├── FindRefAltByVariantKey.Rd │ ├── FindRvVariantKeyByRsid.Rd │ ├── FindVrChromposRange.Rd │ ├── FindVrRsidByVariantKey.Rd │ ├── FlipAllele.Rd │ ├── GetGenorefSeq.Rd │ ├── GetNextRvVariantKeyByRsid.Rd │ ├── GetNextVrRsidByVariantKey.Rd │ ├── GetRegionKeyChromEndPos.Rd │ ├── GetRegionKeyChromStartPos.Rd │ ├── GetVariantKeyChromEndPos.Rd │ ├── GetVariantKeyChromStartPos.Rd │ ├── GetVariantKeyEndPos.Rd │ ├── GetVariantKeyRefLength.Rd │ ├── HashStringID.Rd │ ├── InitVariantKey.Rd │ ├── MmapGenorefFile.Rd │ ├── MmapNRVKFile.Rd │ ├── MmapRSVKFile.Rd │ ├── MmapVKRSFile.Rd │ ├── MunmapBinfile.Rd │ ├── NormalizeVariant.Rd │ ├── NormalizedVariantKey.Rd │ ├── ParseRegionKeyHex.Rd │ ├── ParseVariantKeyHex.Rd │ ├── RegionKey.Rd │ ├── RegionKeyHex.Rd │ ├── ReverseRegionKey.Rd │ ├── ReverseVariantKey.Rd │ ├── VariantKey.Rd │ ├── VariantKeyHex.Rd │ ├── VariantKeyRange.Rd │ ├── VariantToRegionkey.Rd │ ├── VknrBinToTsv.Rd │ ├── as.character.hex64.Rd │ ├── as.character.uint64.Rd │ ├── as.data.frame.uint64.Rd │ ├── as.hex64.NULL.Rd │ ├── as.hex64.Rd │ ├── as.hex64.character.Rd │ ├── as.hex64.factor.Rd │ ├── as.hex64.hex64.Rd │ ├── as.hex64.uint64.Rd │ ├── as.uint64.NULL.Rd │ ├── as.uint64.Rd │ ├── as.uint64.character.Rd │ ├── as.uint64.double.Rd │ ├── as.uint64.factor.Rd │ ├── as.uint64.hex64.Rd │ ├── as.uint64.integer.Rd │ ├── as.uint64.uint64.Rd │ ├── c.uint64.Rd │ ├── cbind.uint64.Rd │ ├── equals-.uint64.Rd │ ├── format.uint64.Rd │ ├── greater-than-.uint64.Rd │ ├── greater-than-equals-.uint64.Rd │ ├── hex64.Rd │ ├── identical.hex64.Rd │ ├── identical.uint64.Rd │ ├── intersect.uint64.Rd │ ├── is.hex64.Rd │ ├── is.uint64.Rd │ ├── length-set-.uint64.Rd │ ├── less-than-.uint64.Rd │ ├── less-than-equals-.uint64.Rd │ ├── not-equals-.uint64.Rd │ ├── order.uint64.Rd │ ├── print.uint64.Rd │ ├── rbind.uint64.Rd │ ├── rep.uint64.Rd │ ├── rev.uint64.Rd │ ├── sort.uint64.Rd │ ├── sub-.uint64.Rd │ ├── sub-sub-.uint64.Rd │ ├── sub-subset-.uint64.Rd │ ├── subset-.uint64.Rd │ ├── uint64.Rd │ ├── union.uint64.Rd │ └── unique.uint64.Rd │ ├── src │ ├── Makevars │ ├── uint64.h │ └── variantkey.c │ └── tests │ ├── testthat.R │ └── testthat │ ├── test-binsearch.R │ ├── test-esid.R │ ├── test-genoref.R │ ├── test-hex64.R │ ├── test-nrvk.R │ ├── test-regionkey.R │ ├── test-rsidvar.R │ ├── test-uint64.R │ └── test-variantkey.R └── resources ├── Docker └── Dockerfile.dev ├── bcftools └── plugins │ ├── add-variantkey.c │ └── variantkey-hex.c ├── doc └── index.html └── tools ├── README.md ├── fastabin.sh ├── nrvk.sh ├── rsvk.sh ├── vcfnorm.sh ├── vkhexbin.sh └── vkrs.sh /.dockerignore: -------------------------------------------------------------------------------- 1 | .git 2 | .cache 3 | .benchmarks 4 | env-* 5 | -------------------------------------------------------------------------------- /.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/.gitattributes -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/.gitignore -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/.travis.yml -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/README.md -------------------------------------------------------------------------------- /RELEASE: -------------------------------------------------------------------------------- 1 | 1 2 | -------------------------------------------------------------------------------- /VERSION: -------------------------------------------------------------------------------- 1 | 5.4.1 2 | -------------------------------------------------------------------------------- /c/.gitignore: -------------------------------------------------------------------------------- 1 | target 2 | -------------------------------------------------------------------------------- /c/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/CMakeLists.txt -------------------------------------------------------------------------------- /c/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/Makefile -------------------------------------------------------------------------------- /c/cmake_uninstall.cmake.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/cmake_uninstall.cmake.in -------------------------------------------------------------------------------- /c/doc/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/doc/CMakeLists.txt -------------------------------------------------------------------------------- /c/doc/Doxyfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/doc/Doxyfile -------------------------------------------------------------------------------- /c/resources/debian/changelog: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/resources/debian/changelog -------------------------------------------------------------------------------- /c/resources/debian/compat: -------------------------------------------------------------------------------- 1 | 9 2 | -------------------------------------------------------------------------------- /c/resources/debian/control: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/resources/debian/control -------------------------------------------------------------------------------- /c/resources/debian/copyright: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/resources/debian/copyright -------------------------------------------------------------------------------- /c/resources/debian/rules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/resources/debian/rules -------------------------------------------------------------------------------- /c/resources/debian/source/format: -------------------------------------------------------------------------------- 1 | 3.0 (quilt) 2 | -------------------------------------------------------------------------------- /c/resources/rpm/rpm.spec: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/resources/rpm/rpm.spec -------------------------------------------------------------------------------- /c/src/variantkey/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/src/variantkey/CMakeLists.txt -------------------------------------------------------------------------------- /c/src/variantkey/binsearch.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/src/variantkey/binsearch.h -------------------------------------------------------------------------------- /c/src/variantkey/esid.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/src/variantkey/esid.h -------------------------------------------------------------------------------- /c/src/variantkey/genoref.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/src/variantkey/genoref.h -------------------------------------------------------------------------------- /c/src/variantkey/hex.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/src/variantkey/hex.h -------------------------------------------------------------------------------- /c/src/variantkey/nrvk.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/src/variantkey/nrvk.h -------------------------------------------------------------------------------- /c/src/variantkey/regionkey.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/src/variantkey/regionkey.h -------------------------------------------------------------------------------- /c/src/variantkey/rsidvar.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/src/variantkey/rsidvar.h -------------------------------------------------------------------------------- /c/src/variantkey/set.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/src/variantkey/set.h -------------------------------------------------------------------------------- /c/src/variantkey/variantkey.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/src/variantkey/variantkey.h -------------------------------------------------------------------------------- /c/test/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/CMakeLists.txt -------------------------------------------------------------------------------- /c/test/data/genoref.bin: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/genoref.bin -------------------------------------------------------------------------------- /c/test/data/genoref.fa: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/genoref.fa -------------------------------------------------------------------------------- /c/test/data/nrvk.10.bin: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/nrvk.10.bin -------------------------------------------------------------------------------- /c/test/data/nrvk.10.unsorted.tsv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/nrvk.10.unsorted.tsv -------------------------------------------------------------------------------- /c/test/data/rsvk.10.bin: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/rsvk.10.bin -------------------------------------------------------------------------------- /c/test/data/rsvk.10.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/rsvk.10.hex -------------------------------------------------------------------------------- /c/test/data/rsvk.m.10.bin: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/rsvk.m.10.bin -------------------------------------------------------------------------------- /c/test/data/rsvk.m.10.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/rsvk.m.10.hex -------------------------------------------------------------------------------- /c/test/data/rsvk.sorted.10.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/rsvk.sorted.10.hex -------------------------------------------------------------------------------- /c/test/data/rsvk.sorted.m.10.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/rsvk.sorted.m.10.hex -------------------------------------------------------------------------------- /c/test/data/rsvk.unsorted.10.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/rsvk.unsorted.10.hex -------------------------------------------------------------------------------- /c/test/data/rsvk.unsorted.m.10.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/rsvk.unsorted.m.10.hex -------------------------------------------------------------------------------- /c/test/data/test_data.bin: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/test_data.bin -------------------------------------------------------------------------------- /c/test/data/test_data.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/test_data.hex -------------------------------------------------------------------------------- /c/test/data/test_data_arrow.bin: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/test_data_arrow.bin -------------------------------------------------------------------------------- /c/test/data/test_data_binsrc.bin: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/test_data_binsrc.bin -------------------------------------------------------------------------------- /c/test/data/test_data_binsrc.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/test_data_binsrc.hex -------------------------------------------------------------------------------- /c/test/data/test_data_col.bin: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/test_data_col.bin -------------------------------------------------------------------------------- /c/test/data/test_data_col.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/test_data_col.hex -------------------------------------------------------------------------------- /c/test/data/test_data_feather.bin: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/test_data_feather.bin -------------------------------------------------------------------------------- /c/test/data/vkrs.10.bin: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/vkrs.10.bin -------------------------------------------------------------------------------- /c/test/data/vkrs.10.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/vkrs.10.hex -------------------------------------------------------------------------------- /c/test/data/vkrs.sorted.10.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/vkrs.sorted.10.hex -------------------------------------------------------------------------------- /c/test/data/vkrs.unsorted.10.hex: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/data/vkrs.unsorted.10.hex -------------------------------------------------------------------------------- /c/test/rsidvar_bench/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/rsidvar_bench/CMakeLists.txt -------------------------------------------------------------------------------- /c/test/rsidvar_bench/rsidvar_bench.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/rsidvar_bench/rsidvar_bench.c -------------------------------------------------------------------------------- /c/test/test_binsearch.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_binsearch.c -------------------------------------------------------------------------------- /c/test/test_binsearch_col.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_binsearch_col.c -------------------------------------------------------------------------------- /c/test/test_binsearch_file.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_binsearch_file.c -------------------------------------------------------------------------------- /c/test/test_esid.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_esid.c -------------------------------------------------------------------------------- /c/test/test_example.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_example.c -------------------------------------------------------------------------------- /c/test/test_genoref.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_genoref.c -------------------------------------------------------------------------------- /c/test/test_hex.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_hex.c -------------------------------------------------------------------------------- /c/test/test_nrvk.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_nrvk.c -------------------------------------------------------------------------------- /c/test/test_regionkey.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_regionkey.c -------------------------------------------------------------------------------- /c/test/test_rsidvar.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_rsidvar.c -------------------------------------------------------------------------------- /c/test/test_set.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_set.c -------------------------------------------------------------------------------- /c/test/test_variantkey.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/test/test_variantkey.c -------------------------------------------------------------------------------- /c/vk/CMakeLists.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/vk/CMakeLists.txt -------------------------------------------------------------------------------- /c/vk/vk.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/c/vk/vk.c -------------------------------------------------------------------------------- /conda/c.src/build.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/c.src/build.sh -------------------------------------------------------------------------------- /conda/c.src/meta.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/c.src/meta.yaml -------------------------------------------------------------------------------- /conda/c.vk/build.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/c.vk/build.sh -------------------------------------------------------------------------------- /conda/c.vk/meta.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/c.vk/meta.yaml -------------------------------------------------------------------------------- /conda/channels.mk: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/channels.mk -------------------------------------------------------------------------------- /conda/python-class/build.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/python-class/build.sh -------------------------------------------------------------------------------- /conda/python-class/meta.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/python-class/meta.yaml -------------------------------------------------------------------------------- /conda/python-class/run_test.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/python-class/run_test.sh -------------------------------------------------------------------------------- /conda/python/build.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/python/build.sh -------------------------------------------------------------------------------- /conda/python/meta.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/python/meta.yaml -------------------------------------------------------------------------------- /conda/python/run_test.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/python/run_test.sh -------------------------------------------------------------------------------- /conda/r/build.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/r/build.sh -------------------------------------------------------------------------------- /conda/r/meta.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/r/meta.yaml -------------------------------------------------------------------------------- /conda/r/run_test.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/r/run_test.sh -------------------------------------------------------------------------------- /conda/setup-conda.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/conda/setup-conda.sh -------------------------------------------------------------------------------- /docker/dev/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/docker/dev/Dockerfile -------------------------------------------------------------------------------- /docker/scripts/install-common.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/docker/scripts/install-common.sh -------------------------------------------------------------------------------- /docker/scripts/install-python-pyvariantkey.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/docker/scripts/install-python-pyvariantkey.sh -------------------------------------------------------------------------------- /docker/scripts/install-python-variantkey.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/docker/scripts/install-python-variantkey.sh -------------------------------------------------------------------------------- /dockerbuild.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/dockerbuild.sh -------------------------------------------------------------------------------- /go/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/.gitignore -------------------------------------------------------------------------------- /go/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/Makefile -------------------------------------------------------------------------------- /go/example/main.go: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/example/main.go -------------------------------------------------------------------------------- /go/src/esid_test.go: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/src/esid_test.go -------------------------------------------------------------------------------- /go/src/genoref_test.go: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/src/genoref_test.go -------------------------------------------------------------------------------- /go/src/main_test.go: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/src/main_test.go -------------------------------------------------------------------------------- /go/src/nrvk_test.go: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/src/nrvk_test.go -------------------------------------------------------------------------------- /go/src/regionkey_test.go: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/src/regionkey_test.go -------------------------------------------------------------------------------- /go/src/rsidvar_test.go: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/src/rsidvar_test.go -------------------------------------------------------------------------------- /go/src/variantkey.go: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/src/variantkey.go -------------------------------------------------------------------------------- /go/src/variantkey_test.go: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/go/src/variantkey_test.go -------------------------------------------------------------------------------- /javascript/.gitignore: -------------------------------------------------------------------------------- 1 | target 2 | -------------------------------------------------------------------------------- /javascript/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/javascript/Makefile -------------------------------------------------------------------------------- /javascript/src/variantkey.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/javascript/src/variantkey.js -------------------------------------------------------------------------------- /javascript/test/test_esid.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/javascript/test/test_esid.js -------------------------------------------------------------------------------- /javascript/test/test_regionkey.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/javascript/test/test_regionkey.js -------------------------------------------------------------------------------- /javascript/test/test_variantkey.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/javascript/test/test_variantkey.js -------------------------------------------------------------------------------- /python-class/.gitattributes: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/.gitattributes -------------------------------------------------------------------------------- /python-class/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/.gitignore -------------------------------------------------------------------------------- /python-class/MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/MANIFEST.in -------------------------------------------------------------------------------- /python-class/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/Makefile -------------------------------------------------------------------------------- /python-class/pyvariantkey/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /python-class/pyvariantkey/variantkey.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/pyvariantkey/variantkey.py -------------------------------------------------------------------------------- /python-class/setup.cfg: -------------------------------------------------------------------------------- 1 | [bdist_wheel] 2 | -------------------------------------------------------------------------------- /python-class/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/setup.py -------------------------------------------------------------------------------- /python-class/test/__init__.py: -------------------------------------------------------------------------------- 1 | -------------------------------------------------------------------------------- /python-class/test/example.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/test/example.py -------------------------------------------------------------------------------- /python-class/test/test_esid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/test/test_esid.py -------------------------------------------------------------------------------- /python-class/test/test_file_errors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/test/test_file_errors.py -------------------------------------------------------------------------------- /python-class/test/test_genoref.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/test/test_genoref.py -------------------------------------------------------------------------------- /python-class/test/test_nrvk.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/test/test_nrvk.py -------------------------------------------------------------------------------- /python-class/test/test_regionkey.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/test/test_regionkey.py -------------------------------------------------------------------------------- /python-class/test/test_rsidvar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/test/test_rsidvar.py -------------------------------------------------------------------------------- /python-class/test/test_variantkey.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python-class/test/test_variantkey.py -------------------------------------------------------------------------------- /python/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/.gitignore -------------------------------------------------------------------------------- /python/MANIFEST.in: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/MANIFEST.in -------------------------------------------------------------------------------- /python/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/Makefile -------------------------------------------------------------------------------- /python/setup.cfg: -------------------------------------------------------------------------------- 1 | [bdist_wheel] 2 | -------------------------------------------------------------------------------- /python/setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/setup.py -------------------------------------------------------------------------------- /python/test/example.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/test/example.py -------------------------------------------------------------------------------- /python/test/test_esid.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/test/test_esid.py -------------------------------------------------------------------------------- /python/test/test_genoref.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/test/test_genoref.py -------------------------------------------------------------------------------- /python/test/test_nrvk.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/test/test_nrvk.py -------------------------------------------------------------------------------- /python/test/test_regionkey.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/test/test_regionkey.py -------------------------------------------------------------------------------- /python/test/test_rsidvar.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/test/test_rsidvar.py -------------------------------------------------------------------------------- /python/test/test_variantkey.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/test/test_variantkey.py -------------------------------------------------------------------------------- /python/variantkey/pyvariantkey.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/variantkey/pyvariantkey.c -------------------------------------------------------------------------------- /python/variantkey/pyvariantkey.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/python/variantkey/pyvariantkey.h -------------------------------------------------------------------------------- /r/.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/.gitignore -------------------------------------------------------------------------------- /r/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/Makefile -------------------------------------------------------------------------------- /r/example/example.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/example/example.R -------------------------------------------------------------------------------- /r/variantkey/.Rbuildignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/.Rbuildignore -------------------------------------------------------------------------------- /r/variantkey/DESCRIPTION: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/DESCRIPTION -------------------------------------------------------------------------------- /r/variantkey/NAMESPACE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/NAMESPACE -------------------------------------------------------------------------------- /r/variantkey/R/hex64.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/R/hex64.R -------------------------------------------------------------------------------- /r/variantkey/R/uint64.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/R/uint64.R -------------------------------------------------------------------------------- /r/variantkey/R/variantkey.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/R/variantkey.R -------------------------------------------------------------------------------- /r/variantkey/man/AreOverlappingRegionKeys.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/AreOverlappingRegionKeys.Rd -------------------------------------------------------------------------------- /r/variantkey/man/AreOverlappingRegionRegionKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/AreOverlappingRegionRegionKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/AreOverlappingRegions.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/AreOverlappingRegions.Rd -------------------------------------------------------------------------------- /r/variantkey/man/AreOverlappingVariantKeyRegionKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/AreOverlappingVariantKeyRegionKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/CheckReference.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/CheckReference.Rd -------------------------------------------------------------------------------- /r/variantkey/man/CloseVariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/CloseVariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/CompareVariantKeyChrom.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/CompareVariantKeyChrom.Rd -------------------------------------------------------------------------------- /r/variantkey/man/CompareVariantKeyChromPos.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/CompareVariantKeyChromPos.Rd -------------------------------------------------------------------------------- /r/variantkey/man/DecodeChrom.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/DecodeChrom.Rd -------------------------------------------------------------------------------- /r/variantkey/man/DecodeRefAlt.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/DecodeRefAlt.Rd -------------------------------------------------------------------------------- /r/variantkey/man/DecodeRegionKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/DecodeRegionKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/DecodeRegionStrand.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/DecodeRegionStrand.Rd -------------------------------------------------------------------------------- /r/variantkey/man/DecodeStringID.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/DecodeStringID.Rd -------------------------------------------------------------------------------- /r/variantkey/man/DecodeVariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/DecodeVariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/EncodeChrom.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/EncodeChrom.Rd -------------------------------------------------------------------------------- /r/variantkey/man/EncodeRefAlt.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/EncodeRefAlt.Rd -------------------------------------------------------------------------------- /r/variantkey/man/EncodeRegionKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/EncodeRegionKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/EncodeRegionStrand.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/EncodeRegionStrand.Rd -------------------------------------------------------------------------------- /r/variantkey/man/EncodeStringID.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/EncodeStringID.Rd -------------------------------------------------------------------------------- /r/variantkey/man/EncodeStringNumID.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/EncodeStringNumID.Rd -------------------------------------------------------------------------------- /r/variantkey/man/EncodeVariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/EncodeVariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ExtendRegionKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ExtendRegionKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ExtractRegionKeyChrom.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ExtractRegionKeyChrom.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ExtractRegionKeyEndPos.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ExtractRegionKeyEndPos.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ExtractRegionKeyStartPos.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ExtractRegionKeyStartPos.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ExtractRegionKeyStrand.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ExtractRegionKeyStrand.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ExtractVariantKeyChrom.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ExtractVariantKeyChrom.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ExtractVariantKeyPos.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ExtractVariantKeyPos.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ExtractVariantKeyRefAlt.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ExtractVariantKeyRefAlt.Rd -------------------------------------------------------------------------------- /r/variantkey/man/FindAllRvVariantKeyByRsid.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/FindAllRvVariantKeyByRsid.Rd -------------------------------------------------------------------------------- /r/variantkey/man/FindAllVrRsidByVariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/FindAllVrRsidByVariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/FindRefAltByVariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/FindRefAltByVariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/FindRvVariantKeyByRsid.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/FindRvVariantKeyByRsid.Rd -------------------------------------------------------------------------------- /r/variantkey/man/FindVrChromposRange.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/FindVrChromposRange.Rd -------------------------------------------------------------------------------- /r/variantkey/man/FindVrRsidByVariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/FindVrRsidByVariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/FlipAllele.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/FlipAllele.Rd -------------------------------------------------------------------------------- /r/variantkey/man/GetGenorefSeq.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/GetGenorefSeq.Rd -------------------------------------------------------------------------------- /r/variantkey/man/GetNextRvVariantKeyByRsid.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/GetNextRvVariantKeyByRsid.Rd -------------------------------------------------------------------------------- /r/variantkey/man/GetNextVrRsidByVariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/GetNextVrRsidByVariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/GetRegionKeyChromEndPos.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/GetRegionKeyChromEndPos.Rd -------------------------------------------------------------------------------- /r/variantkey/man/GetRegionKeyChromStartPos.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/GetRegionKeyChromStartPos.Rd -------------------------------------------------------------------------------- /r/variantkey/man/GetVariantKeyChromEndPos.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/GetVariantKeyChromEndPos.Rd -------------------------------------------------------------------------------- /r/variantkey/man/GetVariantKeyChromStartPos.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/GetVariantKeyChromStartPos.Rd -------------------------------------------------------------------------------- /r/variantkey/man/GetVariantKeyEndPos.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/GetVariantKeyEndPos.Rd -------------------------------------------------------------------------------- /r/variantkey/man/GetVariantKeyRefLength.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/GetVariantKeyRefLength.Rd -------------------------------------------------------------------------------- /r/variantkey/man/HashStringID.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/HashStringID.Rd -------------------------------------------------------------------------------- /r/variantkey/man/InitVariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/InitVariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/MmapGenorefFile.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/MmapGenorefFile.Rd -------------------------------------------------------------------------------- /r/variantkey/man/MmapNRVKFile.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/MmapNRVKFile.Rd -------------------------------------------------------------------------------- /r/variantkey/man/MmapRSVKFile.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/MmapRSVKFile.Rd -------------------------------------------------------------------------------- /r/variantkey/man/MmapVKRSFile.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/MmapVKRSFile.Rd -------------------------------------------------------------------------------- /r/variantkey/man/MunmapBinfile.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/MunmapBinfile.Rd -------------------------------------------------------------------------------- /r/variantkey/man/NormalizeVariant.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/NormalizeVariant.Rd -------------------------------------------------------------------------------- /r/variantkey/man/NormalizedVariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/NormalizedVariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ParseRegionKeyHex.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ParseRegionKeyHex.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ParseVariantKeyHex.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ParseVariantKeyHex.Rd -------------------------------------------------------------------------------- /r/variantkey/man/RegionKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/RegionKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/RegionKeyHex.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/RegionKeyHex.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ReverseRegionKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ReverseRegionKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/ReverseVariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/ReverseVariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/VariantKey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/VariantKey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/VariantKeyHex.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/VariantKeyHex.Rd -------------------------------------------------------------------------------- /r/variantkey/man/VariantKeyRange.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/VariantKeyRange.Rd -------------------------------------------------------------------------------- /r/variantkey/man/VariantToRegionkey.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/VariantToRegionkey.Rd -------------------------------------------------------------------------------- /r/variantkey/man/VknrBinToTsv.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/VknrBinToTsv.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.character.hex64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.character.hex64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.character.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.character.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.data.frame.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.data.frame.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.hex64.NULL.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.hex64.NULL.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.hex64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.hex64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.hex64.character.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.hex64.character.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.hex64.factor.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.hex64.factor.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.hex64.hex64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.hex64.hex64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.hex64.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.hex64.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.uint64.NULL.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.uint64.NULL.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.uint64.character.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.uint64.character.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.uint64.double.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.uint64.double.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.uint64.factor.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.uint64.factor.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.uint64.hex64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.uint64.hex64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.uint64.integer.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.uint64.integer.Rd -------------------------------------------------------------------------------- /r/variantkey/man/as.uint64.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/as.uint64.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/c.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/c.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/cbind.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/cbind.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/equals-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/equals-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/format.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/format.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/greater-than-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/greater-than-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/greater-than-equals-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/greater-than-equals-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/hex64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/hex64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/identical.hex64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/identical.hex64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/identical.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/identical.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/intersect.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/intersect.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/is.hex64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/is.hex64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/is.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/is.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/length-set-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/length-set-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/less-than-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/less-than-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/less-than-equals-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/less-than-equals-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/not-equals-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/not-equals-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/order.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/order.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/print.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/print.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/rbind.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/rbind.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/rep.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/rep.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/rev.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/rev.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/sort.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/sort.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/sub-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/sub-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/sub-sub-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/sub-sub-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/sub-subset-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/sub-subset-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/subset-.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/subset-.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/union.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/union.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/man/unique.uint64.Rd: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/man/unique.uint64.Rd -------------------------------------------------------------------------------- /r/variantkey/src/Makevars: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/src/Makevars -------------------------------------------------------------------------------- /r/variantkey/src/uint64.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/src/uint64.h -------------------------------------------------------------------------------- /r/variantkey/src/variantkey.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/src/variantkey.c -------------------------------------------------------------------------------- /r/variantkey/tests/testthat.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/tests/testthat.R -------------------------------------------------------------------------------- /r/variantkey/tests/testthat/test-binsearch.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/tests/testthat/test-binsearch.R -------------------------------------------------------------------------------- /r/variantkey/tests/testthat/test-esid.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/tests/testthat/test-esid.R -------------------------------------------------------------------------------- /r/variantkey/tests/testthat/test-genoref.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/tests/testthat/test-genoref.R -------------------------------------------------------------------------------- /r/variantkey/tests/testthat/test-hex64.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/tests/testthat/test-hex64.R -------------------------------------------------------------------------------- /r/variantkey/tests/testthat/test-nrvk.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/tests/testthat/test-nrvk.R -------------------------------------------------------------------------------- /r/variantkey/tests/testthat/test-regionkey.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/tests/testthat/test-regionkey.R -------------------------------------------------------------------------------- /r/variantkey/tests/testthat/test-rsidvar.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/tests/testthat/test-rsidvar.R -------------------------------------------------------------------------------- /r/variantkey/tests/testthat/test-uint64.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/tests/testthat/test-uint64.R -------------------------------------------------------------------------------- /r/variantkey/tests/testthat/test-variantkey.R: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/r/variantkey/tests/testthat/test-variantkey.R -------------------------------------------------------------------------------- /resources/Docker/Dockerfile.dev: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/Docker/Dockerfile.dev -------------------------------------------------------------------------------- /resources/bcftools/plugins/add-variantkey.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/bcftools/plugins/add-variantkey.c -------------------------------------------------------------------------------- /resources/bcftools/plugins/variantkey-hex.c: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/bcftools/plugins/variantkey-hex.c -------------------------------------------------------------------------------- /resources/doc/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/doc/index.html -------------------------------------------------------------------------------- /resources/tools/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/tools/README.md -------------------------------------------------------------------------------- /resources/tools/fastabin.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/tools/fastabin.sh -------------------------------------------------------------------------------- /resources/tools/nrvk.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/tools/nrvk.sh -------------------------------------------------------------------------------- /resources/tools/rsvk.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/tools/rsvk.sh -------------------------------------------------------------------------------- /resources/tools/vcfnorm.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/tools/vcfnorm.sh -------------------------------------------------------------------------------- /resources/tools/vkhexbin.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/tools/vkhexbin.sh -------------------------------------------------------------------------------- /resources/tools/vkrs.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/genomics-dev/variantkey/HEAD/resources/tools/vkrs.sh --------------------------------------------------------------------------------