├── .github ├── ISSUE_TEMPLATE │ ├── config.yml │ ├── new-feature-or-discussion.md │ └── question-issue.md ├── PULL_REQUEST_TEMPLATE.md └── workflows │ ├── ecr_deploy.yml │ ├── shell_var_manifest.yml │ └── stale.yml ├── .gitignore ├── .readthedocs.yaml ├── .vscode └── settings.json ├── LICENSE.md ├── README.md ├── config.yml ├── docs ├── Makefile ├── make.bat ├── requirements.txt └── source │ ├── .vscode │ └── settings.json │ ├── _static │ ├── css │ │ └── custom.css │ ├── favicon.ico │ ├── imi_logo_small.png │ ├── panoply_example.png │ ├── sg-interactive.html │ └── stretched_grid_demo.png │ ├── advanced │ ├── custom-prior-emissions-hemco.rst │ ├── custom-region.rst │ ├── custom-state-vector.rst │ ├── img │ │ ├── ensemble_sensitivity.png │ │ ├── ensemble_spread.png │ │ ├── kalman_filter.png │ │ └── variability_visualization.png │ ├── imi-docker-container.rst │ ├── inversion-ensemble.rst │ ├── kalman-filter-mode.rst │ ├── local-cluster.rst │ ├── running-with-tmux.rst │ ├── setting-up-jupyter.rst │ └── using-clustering-options.rst │ ├── bibtex.json │ ├── conf.py │ ├── geos-chem-shared-docs │ ├── _static │ │ ├── favicon.png │ │ └── geos-chem-logo.svg │ ├── copernicus.bst │ ├── editing_these_docs.rst │ └── geos-chem.bib │ ├── getting-started │ ├── IMI-glossary.rst │ ├── best-practices.rst │ ├── faqs.rst │ ├── img │ │ ├── EC2_launch_seven_steps.png │ │ ├── access_key_console.png │ │ ├── access_key_console_backup.png │ │ ├── assign_iam_to_ec2.png │ │ ├── attach_ebs_in_menu.png │ │ ├── attach_ebs_option.png │ │ ├── avail_zone.png │ │ ├── aws_services.png │ │ ├── change_security_group.png │ │ ├── choose_instance_type.png │ │ ├── choose_security_console.png │ │ ├── choose_security_group.png │ │ ├── choose_storage.png │ │ ├── configuration.png │ │ ├── connect_instruction.png │ │ ├── create_aws_account.png │ │ ├── create_ebs_volume.png │ │ ├── created_access_key.png │ │ ├── default_security_group.png │ │ ├── download_access_key.png │ │ ├── iam_credential_create.png │ │ ├── iam_credential_download.png │ │ ├── instance.png │ │ ├── key_pair.png │ │ ├── launch_instance.png │ │ ├── launch_screen.png │ │ ├── main_console.png │ │ ├── marketplace_listing.png │ │ ├── new_ebs_volume.png │ │ ├── region_list.png │ │ ├── root_ebs_in_console.png │ │ ├── running_instance.png │ │ ├── search_ami.png │ │ ├── security_group_console.png │ │ ├── security_prompt.png │ │ ├── spot_c4.png │ │ ├── spot_configure.png │ │ ├── spot_console.png │ │ ├── ssh_terminal.png │ │ ├── subscription.png │ │ └── terminate.png │ ├── imi-config-file.rst │ ├── imi-preview.rst │ ├── minimizing-cost-tips.rst │ └── quick-start.rst │ ├── index.rst │ ├── other │ ├── ami-specifications.rst │ ├── common-configurations.rst │ └── listing-directory-contents.rst │ └── reference │ ├── CONTRIBUTING.md │ ├── SUPPORT.md │ ├── glossary.rst │ └── known-bugs.rst ├── envs ├── Harvard-Cannon │ ├── README.md │ ├── config.harvard-cannon.12km.yml │ ├── config.harvard-cannon.global_inv.yml │ ├── config.harvard-cannon.yml │ ├── gcclassic.rocky+gnu10.env │ ├── gcclassic.rocky+gnu10.minimal.env │ ├── gcclassic.rocky+gnu12.env │ ├── gcclassic.rocky+gnu12.minimal.env │ └── imi_env.yml ├── MSU-HPC_Orion │ ├── README.md │ ├── config.msu-hpc_orion.global_inv.yml │ ├── gcclassic.intel2022.orion.env │ └── imi_env.yml └── aws │ ├── conda_env.yml │ ├── slurm │ ├── base_slurm.conf │ ├── cgroup.conf │ ├── configure_slurm.py │ └── initialize_slurm │ └── spack_env.env ├── resources ├── containers │ ├── README.md │ ├── al2 │ │ ├── Dockerfile │ │ ├── README.md │ │ ├── base-image │ │ │ ├── Dockerfile │ │ │ ├── README.md │ │ │ └── install-scripts │ │ │ │ ├── geoschem_deps-gnu-openmpi-102.yaml │ │ │ │ ├── imi_env.yml │ │ │ │ ├── install-imi-env.sh │ │ │ │ ├── install-micromamba.sh │ │ │ │ ├── install-spack-env.sh │ │ │ │ ├── install-spack.sh │ │ │ │ ├── install-system-deps.sh │ │ │ │ └── slurm │ │ │ │ ├── base_slurm.conf │ │ │ │ ├── cgroup.conf │ │ │ │ ├── configure_slurm.py │ │ │ │ └── install-slurm.sh │ │ ├── compose.yml │ │ ├── container_config.yml │ │ └── entrypoint.sh │ └── ubuntu │ │ ├── Dockerfile │ │ ├── README.md │ │ ├── base-image │ │ ├── Dockerfile │ │ ├── README.md │ │ └── install-scripts │ │ │ ├── geoschem_deps-gnu-openmpi-122.yml │ │ │ ├── imi_env.yml │ │ │ ├── install-micromamba.sh │ │ │ ├── install-spack-env.sh │ │ │ ├── install-spack.sh │ │ │ └── slurm │ │ │ ├── base_slurm.conf │ │ │ ├── cgroup.conf │ │ │ ├── configure_slurm.py │ │ │ ├── install-slurm.sh │ │ │ ├── sudoers │ │ │ └── test_slurm.sh │ │ └── entrypoint.sh ├── shapefiles │ ├── PermianBasin_Extent_201712.shp │ └── PermianBasin_Extent_201712.shx └── statevectors │ └── readme ├── run_imi.sh └── src ├── components ├── hemco_prior_emis_component │ ├── get_hemco_grid_vars.py │ └── hemco_prior_emis.sh ├── inversion_component │ └── inversion.sh ├── jacobian_component │ ├── jacobian.sh │ ├── make_jacobian_icbc.py │ └── make_perturbation_sf.py ├── kalman_component │ ├── change_dates.py │ ├── cull_restarts.py │ ├── kalman.sh │ ├── make_periods_csv.py │ ├── make_unit_sf.py │ ├── multiply_posteriors.py │ ├── prepare_sf.py │ └── print_posterior_emissions.py ├── osse_component │ ├── make_random_sf.py │ └── osse_sim.sh ├── posterior_component │ ├── posterior.sh │ └── update_prior_emis.py ├── preview_component │ └── preview.sh ├── setup_component │ └── setup.sh ├── shell_variable_manifest.md ├── spinup_component │ └── spinup.sh ├── statevector_component │ ├── aggregation.py │ └── statevector.sh └── template_component │ └── template.sh ├── geoschem_run_scripts ├── Perturbations.txt ├── ch4_run.template ├── run_bkgd_simulation.sh ├── run_jacobian_simulations.sh ├── run_prior_simulation.sh └── submit_jacobian_simulations_array.sh ├── inversion_scripts ├── get_jacobian_scalefactors.py ├── imi_preview.py ├── invert.py ├── jacobian.py ├── lognormal_invert.py ├── make_gridded_posterior.py ├── merge_partial_k.py ├── operators │ ├── TROPOMI_operator.py │ └── operator_utilities.py ├── plumes.py ├── point_sources.py ├── postproc_diags.py ├── run_inversion.sh ├── setup_gc_cache.py └── utils.py ├── notebooks ├── NOAA_ObsPack_MBL_compare.ipynb ├── kf_notebook.ipynb ├── statevector_from_shapefile.ipynb └── visualization_notebook.ipynb ├── utilities ├── cleanup_script.sh ├── common.sh ├── crop_met.sh ├── download_TROPOMI.py ├── download_aws_file.py ├── download_bc.py ├── download_blended_TROPOMI.py ├── download_gc_data.py ├── find_corrupt_files.sh ├── generate_var_manifest.py ├── make_state_vector_file.py ├── nc_chunk.pl ├── override_config_variables.py ├── parse_yaml.py ├── s3_upload.py ├── sanitize_input_yaml.py ├── test_TROPOMI_dir.py └── utils.py └── write_BCs ├── GEOSChem.Restart.20180401_0000z.nc4 ├── README.md ├── config_boundary_conditions.yml ├── run_boundary_conditions.sh └── write_boundary_conditions.py /.github/ISSUE_TEMPLATE/config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/.github/ISSUE_TEMPLATE/config.yml -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/new-feature-or-discussion.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/.github/ISSUE_TEMPLATE/new-feature-or-discussion.md -------------------------------------------------------------------------------- /.github/ISSUE_TEMPLATE/question-issue.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/.github/ISSUE_TEMPLATE/question-issue.md -------------------------------------------------------------------------------- /.github/PULL_REQUEST_TEMPLATE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/.github/PULL_REQUEST_TEMPLATE.md -------------------------------------------------------------------------------- /.github/workflows/ecr_deploy.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/.github/workflows/ecr_deploy.yml -------------------------------------------------------------------------------- /.github/workflows/shell_var_manifest.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/.github/workflows/shell_var_manifest.yml -------------------------------------------------------------------------------- /.github/workflows/stale.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/.github/workflows/stale.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/.gitignore -------------------------------------------------------------------------------- /.readthedocs.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/.readthedocs.yaml -------------------------------------------------------------------------------- /.vscode/settings.json: -------------------------------------------------------------------------------- 1 | { 2 | "python.formatting.provider": "black" 3 | } -------------------------------------------------------------------------------- /LICENSE.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/LICENSE.md -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/README.md -------------------------------------------------------------------------------- /config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/config.yml -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/make.bat -------------------------------------------------------------------------------- /docs/requirements.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/requirements.txt -------------------------------------------------------------------------------- /docs/source/.vscode/settings.json: -------------------------------------------------------------------------------- 1 | { 2 | "restructuredtext.confPath": "${workspaceFolder}" 3 | } -------------------------------------------------------------------------------- /docs/source/_static/css/custom.css: -------------------------------------------------------------------------------- 1 | .tight-table td { 2 | white-space: normal !important; 3 | } -------------------------------------------------------------------------------- /docs/source/_static/favicon.ico: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/_static/favicon.ico -------------------------------------------------------------------------------- /docs/source/_static/imi_logo_small.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/_static/imi_logo_small.png -------------------------------------------------------------------------------- /docs/source/_static/panoply_example.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/_static/panoply_example.png -------------------------------------------------------------------------------- /docs/source/_static/sg-interactive.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/_static/sg-interactive.html -------------------------------------------------------------------------------- /docs/source/_static/stretched_grid_demo.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/_static/stretched_grid_demo.png -------------------------------------------------------------------------------- /docs/source/advanced/custom-prior-emissions-hemco.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/custom-prior-emissions-hemco.rst -------------------------------------------------------------------------------- /docs/source/advanced/custom-region.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/custom-region.rst -------------------------------------------------------------------------------- /docs/source/advanced/custom-state-vector.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/custom-state-vector.rst -------------------------------------------------------------------------------- /docs/source/advanced/img/ensemble_sensitivity.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/img/ensemble_sensitivity.png -------------------------------------------------------------------------------- /docs/source/advanced/img/ensemble_spread.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/img/ensemble_spread.png -------------------------------------------------------------------------------- /docs/source/advanced/img/kalman_filter.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/img/kalman_filter.png -------------------------------------------------------------------------------- /docs/source/advanced/img/variability_visualization.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/img/variability_visualization.png -------------------------------------------------------------------------------- /docs/source/advanced/imi-docker-container.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/imi-docker-container.rst -------------------------------------------------------------------------------- /docs/source/advanced/inversion-ensemble.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/inversion-ensemble.rst -------------------------------------------------------------------------------- /docs/source/advanced/kalman-filter-mode.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/kalman-filter-mode.rst -------------------------------------------------------------------------------- /docs/source/advanced/local-cluster.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/local-cluster.rst -------------------------------------------------------------------------------- /docs/source/advanced/running-with-tmux.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/running-with-tmux.rst -------------------------------------------------------------------------------- /docs/source/advanced/setting-up-jupyter.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/setting-up-jupyter.rst -------------------------------------------------------------------------------- /docs/source/advanced/using-clustering-options.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/advanced/using-clustering-options.rst -------------------------------------------------------------------------------- /docs/source/bibtex.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/bibtex.json -------------------------------------------------------------------------------- /docs/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/conf.py -------------------------------------------------------------------------------- /docs/source/geos-chem-shared-docs/_static/favicon.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/geos-chem-shared-docs/_static/favicon.png -------------------------------------------------------------------------------- /docs/source/geos-chem-shared-docs/_static/geos-chem-logo.svg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/geos-chem-shared-docs/_static/geos-chem-logo.svg -------------------------------------------------------------------------------- /docs/source/geos-chem-shared-docs/copernicus.bst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/geos-chem-shared-docs/copernicus.bst -------------------------------------------------------------------------------- /docs/source/geos-chem-shared-docs/editing_these_docs.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/geos-chem-shared-docs/editing_these_docs.rst -------------------------------------------------------------------------------- /docs/source/geos-chem-shared-docs/geos-chem.bib: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/geos-chem-shared-docs/geos-chem.bib -------------------------------------------------------------------------------- /docs/source/getting-started/IMI-glossary.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/IMI-glossary.rst -------------------------------------------------------------------------------- /docs/source/getting-started/best-practices.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/best-practices.rst -------------------------------------------------------------------------------- /docs/source/getting-started/faqs.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/faqs.rst -------------------------------------------------------------------------------- /docs/source/getting-started/img/EC2_launch_seven_steps.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/EC2_launch_seven_steps.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/access_key_console.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/access_key_console.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/access_key_console_backup.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/access_key_console_backup.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/assign_iam_to_ec2.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/assign_iam_to_ec2.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/attach_ebs_in_menu.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/attach_ebs_in_menu.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/attach_ebs_option.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/attach_ebs_option.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/avail_zone.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/avail_zone.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/aws_services.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/aws_services.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/change_security_group.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/change_security_group.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/choose_instance_type.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/choose_instance_type.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/choose_security_console.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/choose_security_console.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/choose_security_group.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/choose_security_group.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/choose_storage.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/choose_storage.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/configuration.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/configuration.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/connect_instruction.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/connect_instruction.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/create_aws_account.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/create_aws_account.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/create_ebs_volume.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/create_ebs_volume.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/created_access_key.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/created_access_key.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/default_security_group.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/default_security_group.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/download_access_key.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/download_access_key.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/iam_credential_create.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/iam_credential_create.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/iam_credential_download.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/iam_credential_download.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/instance.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/instance.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/key_pair.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/key_pair.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/launch_instance.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/launch_instance.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/launch_screen.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/launch_screen.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/main_console.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/main_console.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/marketplace_listing.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/marketplace_listing.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/new_ebs_volume.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/new_ebs_volume.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/region_list.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/region_list.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/root_ebs_in_console.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/root_ebs_in_console.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/running_instance.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/running_instance.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/search_ami.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/search_ami.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/security_group_console.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/security_group_console.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/security_prompt.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/security_prompt.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/spot_c4.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/spot_c4.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/spot_configure.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/spot_configure.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/spot_console.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/spot_console.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/ssh_terminal.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/ssh_terminal.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/subscription.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/subscription.png -------------------------------------------------------------------------------- /docs/source/getting-started/img/terminate.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/img/terminate.png -------------------------------------------------------------------------------- /docs/source/getting-started/imi-config-file.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/imi-config-file.rst -------------------------------------------------------------------------------- /docs/source/getting-started/imi-preview.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/imi-preview.rst -------------------------------------------------------------------------------- /docs/source/getting-started/minimizing-cost-tips.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/minimizing-cost-tips.rst -------------------------------------------------------------------------------- /docs/source/getting-started/quick-start.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/getting-started/quick-start.rst -------------------------------------------------------------------------------- /docs/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/index.rst -------------------------------------------------------------------------------- /docs/source/other/ami-specifications.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/other/ami-specifications.rst -------------------------------------------------------------------------------- /docs/source/other/common-configurations.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/other/common-configurations.rst -------------------------------------------------------------------------------- /docs/source/other/listing-directory-contents.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/other/listing-directory-contents.rst -------------------------------------------------------------------------------- /docs/source/reference/CONTRIBUTING.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/reference/CONTRIBUTING.md -------------------------------------------------------------------------------- /docs/source/reference/SUPPORT.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/reference/SUPPORT.md -------------------------------------------------------------------------------- /docs/source/reference/glossary.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/reference/glossary.rst -------------------------------------------------------------------------------- /docs/source/reference/known-bugs.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/docs/source/reference/known-bugs.rst -------------------------------------------------------------------------------- /envs/Harvard-Cannon/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/Harvard-Cannon/README.md -------------------------------------------------------------------------------- /envs/Harvard-Cannon/config.harvard-cannon.12km.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/Harvard-Cannon/config.harvard-cannon.12km.yml -------------------------------------------------------------------------------- /envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/Harvard-Cannon/config.harvard-cannon.global_inv.yml -------------------------------------------------------------------------------- /envs/Harvard-Cannon/config.harvard-cannon.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/Harvard-Cannon/config.harvard-cannon.yml -------------------------------------------------------------------------------- /envs/Harvard-Cannon/gcclassic.rocky+gnu10.env: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/Harvard-Cannon/gcclassic.rocky+gnu10.env -------------------------------------------------------------------------------- /envs/Harvard-Cannon/gcclassic.rocky+gnu10.minimal.env: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/Harvard-Cannon/gcclassic.rocky+gnu10.minimal.env -------------------------------------------------------------------------------- /envs/Harvard-Cannon/gcclassic.rocky+gnu12.env: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/Harvard-Cannon/gcclassic.rocky+gnu12.env -------------------------------------------------------------------------------- /envs/Harvard-Cannon/gcclassic.rocky+gnu12.minimal.env: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/Harvard-Cannon/gcclassic.rocky+gnu12.minimal.env -------------------------------------------------------------------------------- /envs/Harvard-Cannon/imi_env.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/Harvard-Cannon/imi_env.yml -------------------------------------------------------------------------------- /envs/MSU-HPC_Orion/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/MSU-HPC_Orion/README.md -------------------------------------------------------------------------------- /envs/MSU-HPC_Orion/config.msu-hpc_orion.global_inv.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/MSU-HPC_Orion/config.msu-hpc_orion.global_inv.yml -------------------------------------------------------------------------------- /envs/MSU-HPC_Orion/gcclassic.intel2022.orion.env: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/MSU-HPC_Orion/gcclassic.intel2022.orion.env -------------------------------------------------------------------------------- /envs/MSU-HPC_Orion/imi_env.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/MSU-HPC_Orion/imi_env.yml -------------------------------------------------------------------------------- /envs/aws/conda_env.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/aws/conda_env.yml -------------------------------------------------------------------------------- /envs/aws/slurm/base_slurm.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/aws/slurm/base_slurm.conf -------------------------------------------------------------------------------- /envs/aws/slurm/cgroup.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/aws/slurm/cgroup.conf -------------------------------------------------------------------------------- /envs/aws/slurm/configure_slurm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/aws/slurm/configure_slurm.py -------------------------------------------------------------------------------- /envs/aws/slurm/initialize_slurm: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/aws/slurm/initialize_slurm -------------------------------------------------------------------------------- /envs/aws/spack_env.env: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/envs/aws/spack_env.env -------------------------------------------------------------------------------- /resources/containers/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/README.md -------------------------------------------------------------------------------- /resources/containers/al2/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/Dockerfile -------------------------------------------------------------------------------- /resources/containers/al2/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/README.md -------------------------------------------------------------------------------- /resources/containers/al2/base-image/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/Dockerfile -------------------------------------------------------------------------------- /resources/containers/al2/base-image/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/README.md -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/geoschem_deps-gnu-openmpi-102.yaml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/geoschem_deps-gnu-openmpi-102.yaml -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/imi_env.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/imi_env.yml -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/install-imi-env.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/install-imi-env.sh -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/install-micromamba.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/install-micromamba.sh -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/install-spack-env.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/install-spack-env.sh -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/install-spack.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/install-spack.sh -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/install-system-deps.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/install-system-deps.sh -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/slurm/base_slurm.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/slurm/base_slurm.conf -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/slurm/cgroup.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/slurm/cgroup.conf -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/slurm/configure_slurm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/slurm/configure_slurm.py -------------------------------------------------------------------------------- /resources/containers/al2/base-image/install-scripts/slurm/install-slurm.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/base-image/install-scripts/slurm/install-slurm.sh -------------------------------------------------------------------------------- /resources/containers/al2/compose.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/compose.yml -------------------------------------------------------------------------------- /resources/containers/al2/container_config.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/container_config.yml -------------------------------------------------------------------------------- /resources/containers/al2/entrypoint.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/al2/entrypoint.sh -------------------------------------------------------------------------------- /resources/containers/ubuntu/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/Dockerfile -------------------------------------------------------------------------------- /resources/containers/ubuntu/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/README.md -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/Dockerfile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/Dockerfile -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/README.md -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/geoschem_deps-gnu-openmpi-122.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/geoschem_deps-gnu-openmpi-122.yml -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/imi_env.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/imi_env.yml -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/install-micromamba.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/install-micromamba.sh -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/install-spack-env.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/install-spack-env.sh -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/install-spack.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/install-spack.sh -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/slurm/base_slurm.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/slurm/base_slurm.conf -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/slurm/cgroup.conf: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/slurm/cgroup.conf -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/slurm/configure_slurm.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/slurm/configure_slurm.py -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/slurm/install-slurm.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/slurm/install-slurm.sh -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/slurm/sudoers: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/slurm/sudoers -------------------------------------------------------------------------------- /resources/containers/ubuntu/base-image/install-scripts/slurm/test_slurm.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/base-image/install-scripts/slurm/test_slurm.sh -------------------------------------------------------------------------------- /resources/containers/ubuntu/entrypoint.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/containers/ubuntu/entrypoint.sh -------------------------------------------------------------------------------- /resources/shapefiles/PermianBasin_Extent_201712.shp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/shapefiles/PermianBasin_Extent_201712.shp -------------------------------------------------------------------------------- /resources/shapefiles/PermianBasin_Extent_201712.shx: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/shapefiles/PermianBasin_Extent_201712.shx -------------------------------------------------------------------------------- /resources/statevectors/readme: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/resources/statevectors/readme -------------------------------------------------------------------------------- /run_imi.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/run_imi.sh -------------------------------------------------------------------------------- /src/components/hemco_prior_emis_component/get_hemco_grid_vars.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/hemco_prior_emis_component/get_hemco_grid_vars.py -------------------------------------------------------------------------------- /src/components/hemco_prior_emis_component/hemco_prior_emis.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/hemco_prior_emis_component/hemco_prior_emis.sh -------------------------------------------------------------------------------- /src/components/inversion_component/inversion.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/inversion_component/inversion.sh -------------------------------------------------------------------------------- /src/components/jacobian_component/jacobian.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/jacobian_component/jacobian.sh -------------------------------------------------------------------------------- /src/components/jacobian_component/make_jacobian_icbc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/jacobian_component/make_jacobian_icbc.py -------------------------------------------------------------------------------- /src/components/jacobian_component/make_perturbation_sf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/jacobian_component/make_perturbation_sf.py -------------------------------------------------------------------------------- /src/components/kalman_component/change_dates.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/kalman_component/change_dates.py -------------------------------------------------------------------------------- /src/components/kalman_component/cull_restarts.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/kalman_component/cull_restarts.py -------------------------------------------------------------------------------- /src/components/kalman_component/kalman.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/kalman_component/kalman.sh -------------------------------------------------------------------------------- /src/components/kalman_component/make_periods_csv.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/kalman_component/make_periods_csv.py -------------------------------------------------------------------------------- /src/components/kalman_component/make_unit_sf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/kalman_component/make_unit_sf.py -------------------------------------------------------------------------------- /src/components/kalman_component/multiply_posteriors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/kalman_component/multiply_posteriors.py -------------------------------------------------------------------------------- /src/components/kalman_component/prepare_sf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/kalman_component/prepare_sf.py -------------------------------------------------------------------------------- /src/components/kalman_component/print_posterior_emissions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/kalman_component/print_posterior_emissions.py -------------------------------------------------------------------------------- /src/components/osse_component/make_random_sf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/osse_component/make_random_sf.py -------------------------------------------------------------------------------- /src/components/osse_component/osse_sim.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/osse_component/osse_sim.sh -------------------------------------------------------------------------------- /src/components/posterior_component/posterior.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/posterior_component/posterior.sh -------------------------------------------------------------------------------- /src/components/posterior_component/update_prior_emis.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/posterior_component/update_prior_emis.py -------------------------------------------------------------------------------- /src/components/preview_component/preview.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/preview_component/preview.sh -------------------------------------------------------------------------------- /src/components/setup_component/setup.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/setup_component/setup.sh -------------------------------------------------------------------------------- /src/components/shell_variable_manifest.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/shell_variable_manifest.md -------------------------------------------------------------------------------- /src/components/spinup_component/spinup.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/spinup_component/spinup.sh -------------------------------------------------------------------------------- /src/components/statevector_component/aggregation.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/statevector_component/aggregation.py -------------------------------------------------------------------------------- /src/components/statevector_component/statevector.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/statevector_component/statevector.sh -------------------------------------------------------------------------------- /src/components/template_component/template.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/components/template_component/template.sh -------------------------------------------------------------------------------- /src/geoschem_run_scripts/Perturbations.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/geoschem_run_scripts/Perturbations.txt -------------------------------------------------------------------------------- /src/geoschem_run_scripts/ch4_run.template: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/geoschem_run_scripts/ch4_run.template -------------------------------------------------------------------------------- /src/geoschem_run_scripts/run_bkgd_simulation.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/geoschem_run_scripts/run_bkgd_simulation.sh -------------------------------------------------------------------------------- /src/geoschem_run_scripts/run_jacobian_simulations.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/geoschem_run_scripts/run_jacobian_simulations.sh -------------------------------------------------------------------------------- /src/geoschem_run_scripts/run_prior_simulation.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/geoschem_run_scripts/run_prior_simulation.sh -------------------------------------------------------------------------------- /src/geoschem_run_scripts/submit_jacobian_simulations_array.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/geoschem_run_scripts/submit_jacobian_simulations_array.sh -------------------------------------------------------------------------------- /src/inversion_scripts/get_jacobian_scalefactors.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/get_jacobian_scalefactors.py -------------------------------------------------------------------------------- /src/inversion_scripts/imi_preview.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/imi_preview.py -------------------------------------------------------------------------------- /src/inversion_scripts/invert.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/invert.py -------------------------------------------------------------------------------- /src/inversion_scripts/jacobian.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/jacobian.py -------------------------------------------------------------------------------- /src/inversion_scripts/lognormal_invert.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/lognormal_invert.py -------------------------------------------------------------------------------- /src/inversion_scripts/make_gridded_posterior.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/make_gridded_posterior.py -------------------------------------------------------------------------------- /src/inversion_scripts/merge_partial_k.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/merge_partial_k.py -------------------------------------------------------------------------------- /src/inversion_scripts/operators/TROPOMI_operator.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/operators/TROPOMI_operator.py -------------------------------------------------------------------------------- /src/inversion_scripts/operators/operator_utilities.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/operators/operator_utilities.py -------------------------------------------------------------------------------- /src/inversion_scripts/plumes.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/plumes.py -------------------------------------------------------------------------------- /src/inversion_scripts/point_sources.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/point_sources.py -------------------------------------------------------------------------------- /src/inversion_scripts/postproc_diags.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/postproc_diags.py -------------------------------------------------------------------------------- /src/inversion_scripts/run_inversion.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/run_inversion.sh -------------------------------------------------------------------------------- /src/inversion_scripts/setup_gc_cache.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/setup_gc_cache.py -------------------------------------------------------------------------------- /src/inversion_scripts/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/inversion_scripts/utils.py -------------------------------------------------------------------------------- /src/notebooks/NOAA_ObsPack_MBL_compare.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/notebooks/NOAA_ObsPack_MBL_compare.ipynb -------------------------------------------------------------------------------- /src/notebooks/kf_notebook.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/notebooks/kf_notebook.ipynb -------------------------------------------------------------------------------- /src/notebooks/statevector_from_shapefile.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/notebooks/statevector_from_shapefile.ipynb -------------------------------------------------------------------------------- /src/notebooks/visualization_notebook.ipynb: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/notebooks/visualization_notebook.ipynb -------------------------------------------------------------------------------- /src/utilities/cleanup_script.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/cleanup_script.sh -------------------------------------------------------------------------------- /src/utilities/common.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/common.sh -------------------------------------------------------------------------------- /src/utilities/crop_met.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/crop_met.sh -------------------------------------------------------------------------------- /src/utilities/download_TROPOMI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/download_TROPOMI.py -------------------------------------------------------------------------------- /src/utilities/download_aws_file.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/download_aws_file.py -------------------------------------------------------------------------------- /src/utilities/download_bc.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/download_bc.py -------------------------------------------------------------------------------- /src/utilities/download_blended_TROPOMI.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/download_blended_TROPOMI.py -------------------------------------------------------------------------------- /src/utilities/download_gc_data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/download_gc_data.py -------------------------------------------------------------------------------- /src/utilities/find_corrupt_files.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/find_corrupt_files.sh -------------------------------------------------------------------------------- /src/utilities/generate_var_manifest.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/generate_var_manifest.py -------------------------------------------------------------------------------- /src/utilities/make_state_vector_file.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/make_state_vector_file.py -------------------------------------------------------------------------------- /src/utilities/nc_chunk.pl: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/nc_chunk.pl -------------------------------------------------------------------------------- /src/utilities/override_config_variables.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/override_config_variables.py -------------------------------------------------------------------------------- /src/utilities/parse_yaml.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/parse_yaml.py -------------------------------------------------------------------------------- /src/utilities/s3_upload.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/s3_upload.py -------------------------------------------------------------------------------- /src/utilities/sanitize_input_yaml.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/sanitize_input_yaml.py -------------------------------------------------------------------------------- /src/utilities/test_TROPOMI_dir.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/test_TROPOMI_dir.py -------------------------------------------------------------------------------- /src/utilities/utils.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/utilities/utils.py -------------------------------------------------------------------------------- /src/write_BCs/GEOSChem.Restart.20180401_0000z.nc4: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/write_BCs/GEOSChem.Restart.20180401_0000z.nc4 -------------------------------------------------------------------------------- /src/write_BCs/README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/write_BCs/README.md -------------------------------------------------------------------------------- /src/write_BCs/config_boundary_conditions.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/write_BCs/config_boundary_conditions.yml -------------------------------------------------------------------------------- /src/write_BCs/run_boundary_conditions.sh: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/write_BCs/run_boundary_conditions.sh -------------------------------------------------------------------------------- /src/write_BCs/write_boundary_conditions.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/geoschem/integrated_methane_inversion/HEAD/src/write_BCs/write_boundary_conditions.py --------------------------------------------------------------------------------