├── .gitignore ├── LICENSE ├── README.md ├── deTiN ├── __about__.py ├── __init__.py ├── deTiN.py ├── deTiN_SSNV_based_estimate.py ├── deTiN_aSCNA_based_estimate.py └── deTiN_utilities.py ├── deTiN_example_0.1_TiN_sim.ipynb ├── example_data ├── HCC-1143_100_T-sim-final.acs.seg ├── HCC_10_90.call_stats.pon_removed.txt ├── HCC_10_90.normal.hets.tsv ├── HCC_10_90.tumor.hets.tsv ├── MuTect2.call_stats.txt └── exac.pickle_high_af ├── requirements.txt └── setup.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/getzlab/deTiN/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/getzlab/deTiN/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: 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