├── .gitignore ├── LICENSE.txt ├── config └── config.json ├── pictures ├── cell-type-hor.png ├── cell-type-verticle.png ├── demo.png ├── logo.png ├── risk_score_legend.png ├── screenshot_agg.png ├── screenshot_cc.png ├── screenshot_cell_fraction.png ├── screenshot_cell_type_vis.png ├── screenshot_degree_centrality.png ├── screenshot_file_upload.png ├── screenshot_interaction.png ├── screenshot_mode.png ├── screenshot_option.png ├── screenshot_run.png └── screenshot_thumbnail.png ├── preprocessing ├── gen_Seurat_objects_counts.R ├── genepos.py ├── inferCNV.py ├── quality_control.R └── tumor_frac.py ├── readme.md ├── requirements.txt └── src ├── __init__.py ├── about.py ├── dataset.py ├── ga.py ├── get_patch_img.py ├── main_app.py ├── pathology_models.py ├── resnet.py ├── run_predict.py ├── spa_mapping.py ├── spatial_stat.py ├── tutorial.md └── utils.py /.gitignore: -------------------------------------------------------------------------------- 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