├── README.md ├── __init__.py ├── __pycache__ ├── models.cpython-36.pyc └── utils.cpython-36.pyc ├── data ├── fetch.py ├── gdc-client ├── manifests │ ├── gdc_diagnosis_slides_manifest.tsv │ ├── gdc_manifest_complete.tsv │ ├── gdc_manifest_nometh.tsv │ ├── gdc_tissue_slides_manifest.tsv │ ├── resume_manifest.py │ └── resumed.tsv ├── metadata │ └── gdc_metadata.json ├── mount.sh ├── processed │ └── case_files_locs.yaml └── slides.py ├── experiments ├── chart1.py ├── chart2.py ├── chart3.py ├── chart4.py ├── chart5.py ├── count.py ├── plot.py └── predict.py ├── floyd_requirements.txt ├── generators.py ├── logger.py ├── models.py ├── modules.py ├── old ├── dnn │ ├── __init__.py │ ├── image.py │ ├── linear.py │ ├── models.py │ └── synchronizers.py ├── predict1.py ├── predict2.py ├── predict3.py ├── test1.py ├── test2.py └── test3.py ├── requirements.txt └── utils.py /README.md: -------------------------------------------------------------------------------- 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