├── .Rbuildignore ├── .github ├── .gitignore ├── ISSUE_TEMPLATE │ └── atlas-request.md └── workflows │ ├── R-CMD-check.yaml │ ├── pkgdown.yaml │ ├── render-readme.yaml │ └── test-coverage.yaml ├── .gitignore ├── CODE_OF_CONDUCT.md ├── DESCRIPTION ├── LICENSE ├── LICENSE.md ├── NAMESPACE ├── NEWS.md ├── R ├── atlas-steps.R ├── colortable-funcs.R ├── coord-funcs.R ├── create-atlas.R ├── create-ggseg-atlas.R ├── create-ggseg3d-atlas.R ├── dpv-funcs.R ├── dpv2map.R ├── extra-atlases.R ├── fs-structs.R ├── fs-utils.R ├── mesh-funcs.R ├── obj-funcs.R ├── old │ └── nifti2atlas.R ├── subject_2_ascii.R ├── surfsplit.R ├── sysdata.rda └── utils.R ├── README.Rmd ├── README.md ├── _pkgdown.yml ├── codecov.yml ├── data-raw ├── old │ ├── get_surface.R │ ├── old.zip │ └── palettes.R ├── rh.aparc.DKTatlas.annot └── test_create_atlas.R ├── docs ├── 404.html ├── CODE_OF_CONDUCT.html ├── LICENSE-text.html ├── LICENSE.html ├── articles │ ├── customatlas.html │ ├── customatlas3d.html │ ├── customatlas3d_files │ │ └── header-attrs-2.1.3 │ │ │ └── header-attrs.js │ ├── customatlas_files │ │ └── header-attrs-2.1.3 │ │ │ └── header-attrs.js │ ├── figures │ │ ├── vignette-yeo17-3d-plot.png │ │ └── vignette-yeo7-3d-plot.png │ ├── ggsegExtra.html │ ├── ggsegExtra_files │ │ ├── figure-html │ │ │ ├── ggseg-1.png │ │ │ ├── ggseg-2.png │ │ │ ├── ggseg-scale-1.png │ │ │ └── unnamed-chunk-4-1.png │ │ └── header-attrs-2.1.3 │ │ │ └── header-attrs.js │ ├── ggsegrepo.html │ ├── ggsegrepo_files │ │ └── header-attrs-2.1.3 │ │ │ └── header-attrs.js │ └── index.html ├── authors.html ├── bootstrap-toc.css ├── bootstrap-toc.js ├── docsearch.css ├── docsearch.js ├── index.html ├── link.svg ├── pkgdown.css ├── pkgdown.js ├── pkgdown.yml ├── reference │ ├── annot2dpv.html │ ├── aparc_2_mesh.html │ ├── asc2ply.html │ ├── atlas_lab2ctab.html │ ├── atlas_vol2label.html │ ├── atlas_vol2surf.html │ ├── change_meshes.html │ ├── check_fs.html │ ├── ctab_line.html │ ├── curv2asc.html │ ├── curv2ply.html │ ├── curvnf2asc.html │ ├── fs_curvatures.html │ ├── fs_nofixcurv.html │ ├── fs_surfaces.html │ ├── get_ctab.html │ ├── get_mesh.html │ ├── getmode.html │ ├── ggseg_atlas_repos.html │ ├── index.html │ ├── install_ggseg_atlas.html │ ├── install_ggseg_atlas_all.html │ ├── is_ctab.html │ ├── is_facewise.html │ ├── isolate_region.html │ ├── lcbc_surf2surf.html │ ├── make_aparc_2_3datlas.html │ ├── make_aseg_2_3datlas.html │ ├── make_ggseg3d_2_ggseg.html │ ├── make_ggseg_repo.html │ ├── make_palette_ggseg.html │ ├── mri_pretess.html │ ├── mri_smooth.html │ ├── mri_tessellate.html │ ├── mri_vol2label.html │ ├── mri_vol2surf.html │ ├── mris_annot2label.html │ ├── mris_label2annot.html │ ├── prep_n_data.html │ ├── read_annotation.html │ ├── read_ctab.html │ ├── read_dpv.html │ ├── restruct_old_3datlas.html │ ├── smooth2srf.html │ ├── snapshot_brain.html │ ├── subject_2_ascii.html │ ├── surf2asc.html │ ├── surf2ply.html │ ├── surfsplit.html │ ├── write_ctab.html │ └── write_dpv.html └── sitemap.xml ├── ggsegExtra.Rproj ├── inst ├── CITATION ├── README_cit.bib ├── WORDLIST ├── ggsegExtra.svg ├── logo.png ├── m │ └── dpx2map.m ├── rstudio │ └── templates │ │ └── project │ │ ├── create-ggseg-atlas.dcf │ │ ├── create-ggseg-atlas │ │ ├── DESCRIPTION │ │ ├── NAMESPACE │ │ ├── R │ │ │ └── data.R │ │ ├── README.Rmd │ │ ├── data-raw │ │ │ └── create-atlas.R │ │ └── tests │ │ │ ├── testthat.R │ │ │ └── testthat │ │ │ └── test-atlas.R │ │ └── ggseg-logo.png ├── sticker.png └── surfaces │ ├── lh.LCBC │ └── rh.LCBC ├── man-roxygen ├── annot_dir.R ├── cleanup.R ├── hemisphere.R ├── ncores.R ├── opts.R ├── output_dir.R ├── output_file.R ├── smoothness.R ├── steps.R ├── subject.R ├── subjects_dir.R ├── tolerance.R ├── verbose.R └── vertex_size_limits.R ├── man ├── aparc_2_mesh.Rd ├── atlas_lab2ctab.Rd ├── atlas_vol2label.Rd ├── atlas_vol2surf.Rd ├── change_meshes.Rd ├── check_fs.Rd ├── curv2ply.Rd ├── figures │ └── logo.png ├── fs_curvatures.Rd ├── fs_nofixcurv.Rd ├── fs_surfaces.Rd ├── get_mesh.Rd ├── ggseg_atlas_repos.Rd ├── install_ggseg_atlas.Rd ├── install_ggseg_atlas_all.Rd ├── is_ctab.Rd ├── lcbc_surf2surf.Rd ├── make_aparc_2_3datlas.Rd ├── make_ggseg3d_2_ggseg.Rd ├── make_palette_ggseg.Rd ├── make_volumetric_2_3datlas.Rd ├── make_volumetric_ggseg.Rd ├── mri_annotation2label.Rd ├── mri_surf2surf_rereg.Rd ├── mri_vol2label.Rd ├── mris_ca_label.Rd ├── mris_label2annot.Rd ├── read_ctab.Rd ├── restruct_old_3datlas.Rd ├── smooth2srf.Rd ├── subject_2_ascii.Rd ├── surf2ply.Rd ├── surfsplit.Rd └── write_ctab.Rd ├── pkgdown └── favicon │ ├── apple-touch-icon-120x120.png │ ├── apple-touch-icon-152x152.png │ ├── apple-touch-icon-180x180.png │ ├── apple-touch-icon-60x60.png │ ├── apple-touch-icon-76x76.png │ ├── apple-touch-icon.png │ ├── favicon-16x16.png │ ├── favicon-32x32.png │ └── favicon.ico ├── tests ├── spelling.R ├── testthat.R └── testthat │ ├── helper.R │ └── test-extra-atlases.R └── vignettes ├── .gitignore ├── createaseg.Rmd ├── createdkt.Rmd ├── 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