├── requirements.txt ├── .coveragerc ├── doc ├── aseg.png ├── dk01.jpg └── jhu.png ├── MANIFEST.in ├── requirements-dev.txt ├── ggseg ├── data │ ├── dk │ │ ├── entorhinal_left │ │ ├── transversetemporal_left │ │ ├── entorhinal_right │ │ ├── fusiform_right │ │ ├── fusiform_left │ │ ├── parsorbitalis_right │ │ ├── superiorfrontal_left │ │ ├── transversetemporal_right │ │ ├── cuneus_right │ │ ├── parstriangularis_left │ │ ├── inferiortemporal_right │ │ ├── parsorbitalis_left │ │ ├── parstriangularis_right │ │ ├── lateraloccipital_right │ │ ├── parahippocampal_right │ │ ├── parahippocampal_left │ │ ├── paracentral_right │ │ ├── lateralorbitofrontal_left │ │ ├── pericalcarine_right │ │ ├── bankssts_left │ │ ├── supramarginal_left │ │ ├── insula_right │ │ ├── parsopercularis_right │ │ ├── lateralorbitofrontal_right │ │ ├── rostralanteriorcingulate_right │ │ ├── medialorbitofrontal_left │ │ ├── rostralanteriorcingulate_left │ │ ├── caudalanteriorcingulate_right │ │ ├── paracentral_left │ │ ├── bankssts_right │ │ ├── posteriorcingulate_right │ │ ├── parsopercularis_left │ │ ├── medialorbitofrontal_right │ │ ├── lateraloccipital_left │ │ ├── lingual_right │ │ ├── rostralmiddlefrontal_left │ │ ├── caudalmiddlefrontal_right │ │ ├── cuneus_left │ │ ├── isthmuscingulate_right │ │ ├── caudalanteriorcingulate_left │ │ ├── isthmuscingulate_left │ │ ├── caudalmiddlefrontal_left │ │ ├── rostralmiddlefrontal_right │ │ ├── pericalcarine_left │ │ ├── inferiorparietal_right │ │ ├── insula_left │ │ ├── postcentral_right │ │ ├── superiorparietal_right │ │ ├── supramarginal_right │ │ ├── middletemporal_right │ │ ├── medial_right │ │ ├── lingual_left │ │ ├── posteriorcingulate_left │ │ ├── lateral_right │ │ ├── postcentral_left │ │ ├── inferiorparietal_left │ │ ├── superiortemporal_right │ │ ├── superiortemporal_left │ │ ├── precentral_right │ │ ├── precuneus_right │ │ ├── precentral_left │ │ ├── medial_left │ │ ├── corpuscallosum_right │ │ ├── middletemporal_left │ │ ├── lateral_left │ │ ├── superiorfrontal_right │ │ ├── NA_right │ │ ├── NA_left │ │ ├── precuneus_left │ │ ├── inferiortemporal_left │ │ ├── corpuscallosum_left │ │ └── superiorparietal_left │ ├── aseg │ │ ├── Left-Pallidum │ │ ├── Right-Pallidum │ │ ├── Right-Caudate │ │ ├── Left-Amygdala │ │ ├── Left-Caudate │ │ ├── Right-Lateral-Ventricle │ │ ├── CC_Central │ │ ├── Right-Putamen │ │ ├── Left-Lateral-Ventricle │ │ ├── Left-Putamen │ │ ├── Left-Thalamus │ │ ├── Right-Thalamus │ │ ├── Right-Amygdala │ │ ├── Left-Hippocampus │ │ ├── Right-Hippocampus │ │ ├── Right-VentralDC │ │ ├── Left-VentralDC │ │ ├── CC_Mid_Anterior │ │ ├── CC_Posterior │ │ ├── CC_Mid_Posterior │ │ ├── Cerebellum-White-Matter │ │ ├── CC_Anterior │ │ ├── 3rd-Ventricle │ │ ├── 4th-Ventricle │ │ ├── Brain-Stem │ │ ├── Cerebellum-Cortex │ │ ├── Sagittal │ │ └── Coronal │ └── jhu │ │ ├── Cingulum (cingulate gyrus) R │ │ ├── Cingulum (cingulate gyrus) L │ │ ├── Superior longitudinal fasciculus L │ │ ├── Superior longitudinal fasciculus R │ │ ├── Cingulum (hippocampus) L │ │ ├── Cingulum (hippocampus) R │ │ ├── Superior longitudinal fasciculus (temporal part) R │ │ ├── Superior longitudinal fasciculus (temporal part) L │ │ ├── Uncinate fasciculus L │ │ ├── Uncinate fasciculus R │ │ ├── Forceps major │ │ ├── Inferior longitudinal fasciculus R │ │ ├── Inferior fronto-occipital fasciculus R │ │ ├── Anterior thalamic radiation R │ │ ├── Inferior longitudinal fasciculus L │ │ ├── Anterior thalamic radiation L │ │ ├── Inferior fronto-occipital fasciculus L │ │ ├── Corticospinal tract L │ │ ├── Corticospinal tract R │ │ ├── Forceps minor │ │ └── CSF ├── tests │ └── tests.py └── __init__.py ├── LICENSE ├── setup.py ├── .github └── workflows │ └── main.yml ├── .gitignore └── README.md /requirements.txt: -------------------------------------------------------------------------------- 1 | matplotlib>=3.4 2 | numpy>=1.21 3 | -------------------------------------------------------------------------------- /.coveragerc: -------------------------------------------------------------------------------- 1 | [run] 2 | omit = 3 | ./setup.py 4 | ./docs/* 5 | -------------------------------------------------------------------------------- /doc/aseg.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ggseg/python-ggseg/HEAD/doc/aseg.png -------------------------------------------------------------------------------- /doc/dk01.jpg: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ggseg/python-ggseg/HEAD/doc/dk01.jpg -------------------------------------------------------------------------------- /doc/jhu.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/ggseg/python-ggseg/HEAD/doc/jhu.png -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | include requirements.txt 2 | include README.md 3 | recursive-include ggseg/data * 4 | -------------------------------------------------------------------------------- /requirements-dev.txt: -------------------------------------------------------------------------------- 1 | matplotlib>=3.4 2 | numpy>=1.21 3 | # testing 4 | nose>=1.2.1 5 | coverage>=4.5 6 | coveralls 7 | -------------------------------------------------------------------------------- /ggseg/data/dk/entorhinal_left: -------------------------------------------------------------------------------- 1 | M 1231.25,1148.92 C 1215.06,1143.03 1201.21,1139.97 1204.13,1142.93 1208.21,1147.07 1225.84,1152.87 1234.37,1152.89 1241.06,1152.90 1240.61,1152.33 1231.25,1148.92 1231.25,1148.92 1231.25,1148.92 1231.25,1148.92 Z -------------------------------------------------------------------------------- /ggseg/data/dk/transversetemporal_left: 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1345.31,420.51 1345.31,420.51 1345.31,420.51 1333.06,419.49 1333.06,419.49 1320.51,418.45 1295.46,426.12 1291.73,432.15 1289.25,436.16 1301.20,434.11 1327.44,426.02 1327.44,426.02 1327.44,426.02 1327.44,426.02 Z -------------------------------------------------------------------------------- /ggseg/data/dk/fusiform_left: -------------------------------------------------------------------------------- 1 | M 1087.50,1101.73 C 1087.50,1096.50 1065.60,1087.77 1053.12,1088.04 1053.12,1088.04 1039.06,1088.34 1039.06,1088.34 1039.06,1088.34 1060.94,1095.68 1060.94,1095.68 1084.30,1103.53 1087.50,1104.25 1087.50,1101.73 1087.50,1101.73 1087.50,1101.73 1087.50,1101.73 Z -------------------------------------------------------------------------------- /ggseg/data/dk/parsorbitalis_right: -------------------------------------------------------------------------------- 1 | M 659.61,359.78 C 669.19,350.20 670.55,345.35 665.78,337.80 663.32,333.91 660.48,333.84 646.29,337.27 611.68,345.64 596.87,350.43 596.87,353.27 596.87,357.49 607.67,362.65 622.80,365.63 645.28,370.07 650.08,369.31 659.61,359.78 659.61,359.78 659.61,359.78 659.61,359.78 Z -------------------------------------------------------------------------------- /ggseg/data/dk/superiorfrontal_left: -------------------------------------------------------------------------------- 1 | M 152.43,739.52 C 184.03,716.25 226.99,696.06 266.11,686.08 285.64,681.09 313.96,665.78 307.58,663.65 301.60,661.66 255.16,678.41 219.99,695.26 185.20,711.92 138.25,740.19 131.15,748.75 123.83,757.57 133.77,753.26 152.43,739.52 152.43,739.52 152.43,739.52 152.43,739.52 Z -------------------------------------------------------------------------------- /ggseg/data/dk/transversetemporal_right: -------------------------------------------------------------------------------- 1 | M 378.34,314.80 C 376.83,310.82 371.94,302.18 367.48,295.61 363.02,289.04 359.37,282.72 359.37,281.56 359.37,278.47 340.40,264.96 338.60,266.77 335.82,269.54 349.11,292.06 362.44,307.19 376.73,323.39 382.70,326.25 378.34,314.80 378.34,314.80 378.34,314.80 378.34,314.80 Z -------------------------------------------------------------------------------- /ggseg/data/dk/cuneus_right: -------------------------------------------------------------------------------- 1 | M 1538.97,293.13 C 1533.84,268.84 1494.37,215.78 1481.43,215.78 1478.27,215.78 1467.61,227.13 1455.75,243.12 1426.83,282.12 1427.24,279.21 1450.95,276.67 1467.57,274.89 1475.12,275.73 1491.46,281.17 1502.51,284.84 1516.25,291.32 1522.00,295.57 1536.79,306.48 1541.65,305.78 1538.97,293.13 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Left-Pallidum: -------------------------------------------------------------------------------- 1 | M 392.53,834.94 C 388.96,830.84 387.28,818.00 385.80,783.58 383.25,724.45 386.15,715.53 408.02,715.43 416.37,715.40 419.87,717.73 427.84,728.67 445.33,752.66 452.58,770.11 452.46,787.95 452.29,813.62 442.52,825.71 414.18,835.33 396.06,841.49 398.26,841.53 392.53,834.94 392.53,834.94 392.53,834.94 392.53,834.94 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Right-Pallidum: -------------------------------------------------------------------------------- 1 | M 907.33,830.62 C 870.45,820.11 867.55,812.78 885.61,775.75 897.71,750.91 927.28,715.70 927.49,725.87 927.56,729.06 931.86,737.97 937.05,745.66 951.81,767.53 958.86,783.05 958.86,793.65 958.86,804.27 938.93,837.44 932.78,837.06 930.79,836.94 919.34,834.04 907.33,830.62 907.33,830.62 907.33,830.62 907.33,830.62 Z -------------------------------------------------------------------------------- /ggseg/data/dk/parstriangularis_left: -------------------------------------------------------------------------------- 1 | M 147.50,992.90 C 153.50,988.33 159.84,984.58 161.59,984.58 166.75,984.58 181.25,971.99 181.25,967.51 181.25,965.24 177.62,962.47 173.17,961.36 168.73,960.24 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72.20,1003.16 66.86,999.91 57.49,994.21 56.99,994.21 52.02,999.70 41.91,1010.88 45.99,1022.44 62.60,1029.64 76.78,1035.79 94.94,1035.80 107.88,1029.65 107.88,1029.65 107.88,1029.66 107.88,1029.66 Z -------------------------------------------------------------------------------- /ggseg/data/dk/parstriangularis_right: -------------------------------------------------------------------------------- 1 | M 604.24,335.77 C 657.93,323.70 660.00,321.99 651.78,296.68 648.77,287.42 644.10,277.37 641.39,274.34 636.55,268.93 601.14,256.35 591.08,256.46 584.18,256.55 540.62,297.84 540.62,304.30 540.62,311.69 570.33,338.50 580.80,340.57 581.42,340.69 591.96,338.53 604.24,335.77 604.24,335.77 604.24,335.77 604.24,335.77 Z -------------------------------------------------------------------------------- /ggseg/data/dk/lateraloccipital_right: -------------------------------------------------------------------------------- 1 | M 101.06,345.89 C 104.09,310.91 100.97,302.24 83.97,298.51 69.37,295.30 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2039.54,617.12 2037.09,603.46 2036.22,586.08 2034.88,559.62 2035.06,558.74 2041.68,558.74 2045.44,558.74 2051.05,560.10 2054.14,561.75 2057.23,563.41 2064.94,576.80 2071.26,591.51 2077.58,606.23 2081.81,619.78 2080.67,621.63 2079.53,623.48 2073.89,626.96 2068.14,629.36 2062.38,631.77 2055.56,633.73 2052.97,633.73 2052.97,633.73 2052.97,633.73 2052.97,633.73 Z -------------------------------------------------------------------------------- /ggseg/data/dk/parsopercularis_right: -------------------------------------------------------------------------------- 1 | M 553.25,272.29 C 568.04,257.58 578.12,244.97 578.12,241.20 578.12,234.09 550.27,199.07 540.43,193.80 536.93,191.92 530.29,190.83 525.68,191.37 516.98,192.38 515.82,194.49 509.30,221.11 507.53,228.33 502.44,238.58 497.98,243.88 492.31,250.62 489.75,257.48 489.47,266.68 489.07,279.64 489.33,279.98 506.25,288.34 515.70,293.01 524.55,296.88 525.90,296.93 527.26,296.99 539.56,285.90 553.25,272.29 553.25,272.29 553.25,272.29 553.25,272.29 Z -------------------------------------------------------------------------------- /ggseg/data/dk/lateralorbitofrontal_right: -------------------------------------------------------------------------------- 1 | M 590.62,393.76 C 615.18,390.24 634.37,385.07 634.37,381.96 634.37,380.70 624.55,377.14 612.54,374.05 595.46,369.65 589.28,366.43 584.20,359.29 580.62,354.27 575.73,350.16 573.33,350.16 570.93,350.16 564.00,345.80 557.92,340.46 557.92,340.46 546.87,330.76 546.87,330.76 546.87,330.76 546.87,344.49 546.87,344.49 546.87,352.05 544.75,366.37 542.16,376.32 539.57,386.28 538.14,395.55 538.99,396.92 540.61,399.55 557.19,398.54 590.62,393.76 Z -------------------------------------------------------------------------------- /ggseg/data/dk/rostralanteriorcingulate_right: -------------------------------------------------------------------------------- 1 | M 967.49,393.42 C 968.84,391.24 961.90,382.46 950.07,371.38 950.07,371.38 930.40,352.95 930.40,352.95 930.40,352.95 931.96,315.08 931.96,315.08 933.50,277.73 933.41,277.10 925.68,269.93 915.68,260.66 904.52,260.56 899.05,269.69 896.74,273.56 889.67,285.37 883.36,295.94 877.04,306.52 871.87,317.88 871.87,321.19 871.87,332.23 905.04,370.89 923.65,381.54 948.70,395.87 963.50,399.88 967.49,393.42 967.49,393.42 967.49,393.42 967.49,393.42 Z -------------------------------------------------------------------------------- /ggseg/data/dk/medialorbitofrontal_left: -------------------------------------------------------------------------------- 1 | M 1482.32,1100.34 C 1529.22,1088.35 1556.24,1067.05 1567.75,1033.02 1572.28,1019.61 1569.85,1015.82 1556.77,1015.93 1544.77,1016.04 1542.83,1017.12 1520.63,1036.04 1500.16,1053.49 1474.77,1071.51 1462.92,1076.99 1456.63,1079.90 1441.55,1082.19 1425.42,1082.69 1400.87,1083.44 1396.93,1084.47 1381.75,1094.07 1367.65,1102.99 1365.95,1105.01 1370.81,1107.12 1380.76,1111.43 1457.10,1106.79 1482.32,1100.34 1482.32,1100.34 1482.32,1100.34 1482.32,1100.34 Z -------------------------------------------------------------------------------- /ggseg/data/dk/rostralanteriorcingulate_left: -------------------------------------------------------------------------------- 1 | M 1466.49,1063.60 C 1470.31,1060.15 1480.84,1052.41 1489.88,1046.42 1516.65,1028.69 1535.19,1009.79 1533.35,1002.12 1524.84,966.70 1517.95,953.60 1494.17,927.55 1476.58,908.28 1468.84,921.44 1467.35,973.14 1466.23,1012.18 1462.80,1020.39 1442.15,1033.50 1417.99,1048.85 1409.37,1056.46 1409.37,1062.43 1409.37,1071.59 1413.12,1072.80 1436.80,1071.32 1453.81,1070.25 1461.30,1068.31 1466.49,1063.60 1466.49,1063.60 1466.49,1063.60 1466.49,1063.60 Z -------------------------------------------------------------------------------- /ggseg/data/dk/caudalanteriorcingulate_right: -------------------------------------------------------------------------------- 1 | M 965.89,248.59 C 975.80,239.14 985.91,231.40 988.37,231.40 990.82,231.40 1002.41,225.11 1014.13,217.41 1025.85,209.71 1040.12,201.86 1045.84,199.98 1052.13,197.90 1056.24,194.47 1056.24,191.32 1056.22,184.96 1044.89,165.78 1041.16,165.78 1034.62,165.78 1001.28,178.91 982.02,189.07 958.78,201.33 918.72,237.53 918.79,246.21 918.84,251.94 935.78,265.25 943.47,265.59 945.89,265.69 955.98,258.05 965.89,248.59 965.89,248.59 965.89,248.59 965.89,248.59 Z -------------------------------------------------------------------------------- /ggseg/data/dk/paracentral_left: -------------------------------------------------------------------------------- 1 | M 1208.35,773.20 C 1208.35,773.20 1224.51,771.26 1224.51,771.26 1224.51,771.26 1226.56,745.88 1226.56,745.88 1227.94,728.85 1227.22,714.33 1224.39,701.76 1218.26,674.54 1215.59,673.62 1142.72,673.62 1089.85,673.62 1083.47,674.19 1079.80,679.20 1073.64,687.61 1079.29,708.06 1093.36,728.31 1099.93,737.77 1107.03,750.78 1109.14,757.22 1111.68,764.96 1115.29,769.45 1119.77,770.44 1138.79,774.64 1184.48,776.06 1208.35,773.20 1208.35,773.20 1208.35,773.20 1208.35,773.20 Z -------------------------------------------------------------------------------- /ggseg/data/dk/bankssts_right: -------------------------------------------------------------------------------- 1 | M 257.53,338.12 C 258.44,336.65 257.51,331.03 255.47,325.63 252.42,317.55 252.70,313.29 257.06,301.52 257.06,301.52 262.36,287.24 262.36,287.24 262.36,287.24 249.89,262.44 249.89,262.44 243.04,248.81 235.45,237.65 233.03,237.65 223.12,237.65 218.82,242.12 213.98,257.46 211.18,266.33 206.70,277.93 204.02,283.22 199.58,292.00 199.61,294.25 204.39,308.64 210.21,326.17 216.81,333.58 230.13,337.57 242.05,341.15 255.49,341.41 257.53,338.12 257.53,338.12 257.53,338.12 257.53,338.12 Z -------------------------------------------------------------------------------- /ggseg/data/dk/posteriorcingulate_right: -------------------------------------------------------------------------------- 1 | M 1237.76,188.43 C 1243.32,183.71 1253.59,177.03 1260.57,173.59 1272.27,167.83 1273.34,166.25 1274.12,153.57 1274.58,146.00 1273.39,137.92 1271.47,135.60 1266.34,129.42 1155.47,129.64 1136.83,135.87 1129.46,138.33 1114.37,141.96 1103.29,143.93 1080.60,147.98 1059.37,157.57 1059.37,163.80 1059.37,169.42 1067.94,186.22 1072.92,190.35 1076.67,193.46 1097.28,194.49 1192.73,196.35 1226.73,197.01 1227.91,196.80 1237.76,188.43 1237.76,188.43 1237.76,188.43 1237.76,188.43 Z -------------------------------------------------------------------------------- /ggseg/data/dk/parsopercularis_left: -------------------------------------------------------------------------------- 1 | M 215.80,946.70 C 226.88,943.05 238.60,937.53 241.85,934.45 247.64,928.95 247.57,928.51 238.86,913.74 233.97,905.43 225.62,886.69 220.32,872.08 220.32,872.08 210.67,845.51 210.67,845.51 210.67,845.51 198.30,846.50 198.30,846.50 191.24,847.07 179.51,851.60 170.93,857.09 158.74,864.89 154.19,870.50 146.71,887.00 141.64,898.18 137.50,909.26 137.50,911.64 137.50,916.48 167.71,948.21 175.00,951.03 184.05,954.52 195.84,953.27 215.80,946.70 215.80,946.70 215.80,946.70 215.80,946.70 Z -------------------------------------------------------------------------------- /ggseg/data/dk/medialorbitofrontal_right: -------------------------------------------------------------------------------- 1 | M 1008.72,441.91 C 1018.01,439.42 1016.08,434.16 1004.49,430.37 999.44,428.72 990.69,423.36 985.05,418.45 979.40,413.55 974.32,409.54 973.75,409.54 973.19,409.54 965.42,408.15 956.48,406.46 930.75,401.58 901.56,383.43 884.86,361.93 871.61,344.85 869.74,343.56 861.02,345.42 855.82,346.53 845.58,348.19 838.28,349.11 826.99,350.54 825.00,351.87 825.00,357.97 825.00,366.51 841.39,398.73 850.94,408.94 860.73,419.41 893.90,434.34 918.10,439.15 939.98,443.51 996.35,445.22 1008.72,441.91 Z -------------------------------------------------------------------------------- /ggseg/data/dk/lateraloccipital_left: -------------------------------------------------------------------------------- 1 | M 706.65,1030.15 C 725.76,1022.12 744.02,1006.52 750.17,992.98 758.36,974.93 757.89,944.70 749.03,920.75 741.82,901.24 734.37,894.29 734.37,907.05 734.37,920.42 726.14,927.78 706.95,931.58 685.24,935.87 662.82,946.41 657.41,954.89 654.05,960.14 654.43,963.38 659.77,975.20 665.11,987.02 665.79,992.89 664.04,1011.92 664.04,1011.92 661.97,1034.58 661.97,1034.58 661.97,1034.58 679.04,1034.58 679.04,1034.58 688.43,1034.58 700.85,1032.59 706.65,1030.15 706.65,1030.15 706.65,1030.15 706.65,1030.15 Z -------------------------------------------------------------------------------- /ggseg/data/dk/lingual_right: -------------------------------------------------------------------------------- 1 | M 1387.50,403.20 C 1443.43,399.49 1482.79,391.10 1505.74,378.00 1531.71,363.16 1528.11,358.61 1487.50,354.93 1469.40,353.29 1446.54,349.72 1425.70,345.27 1421.79,344.43 1413.00,338.70 1406.17,332.53 1394.05,321.58 1393.32,321.36 1375.78,323.55 1353.71,326.30 1350.09,328.16 1339.27,342.35 1332.94,350.65 1329.62,360.29 1326.59,379.22 1324.33,393.32 1323.21,406.03 1324.09,407.47 1324.98,408.90 1328.71,409.25 1332.38,408.25 1336.06,407.24 1360.86,404.96 1387.50,403.20 1387.50,403.20 1387.50,403.20 1387.50,403.20 Z -------------------------------------------------------------------------------- /ggseg/data/dk/rostralmiddlefrontal_left: -------------------------------------------------------------------------------- 1 | M 41.30,994.73 C 45.96,984.85 51.79,971.85 54.25,965.83 61.10,949.06 98.57,910.38 110.42,907.84 124.20,904.90 127.21,901.82 139.11,878.51 146.19,864.65 153.24,855.69 160.87,850.86 176.01,841.27 177.19,836.47 167.53,823.81 163.05,817.93 159.37,810.95 159.37,808.31 159.37,799.78 144.22,768.93 139.05,766.94 131.71,764.13 92.98,791.59 67.90,817.38 15.37,871.41 -4.35,945.38 20.32,995.83 24.87,1005.11 29.54,1012.71 30.70,1012.70 31.86,1012.70 36.63,1004.61 41.30,994.73 41.30,994.73 41.30,994.73 41.30,994.73 Z -------------------------------------------------------------------------------- /ggseg/data/dk/caudalmiddlefrontal_right: -------------------------------------------------------------------------------- 1 | M 548.15,170.89 C 549.23,165.11 552.91,157.86 556.31,154.78 560.47,151.02 562.50,145.17 562.50,136.96 562.50,130.24 563.85,122.21 565.50,119.12 569.40,111.84 561.50,104.40 534.37,89.82 510.63,77.06 460.21,57.64 457.60,60.25 456.61,61.24 459.20,67.46 463.36,74.07 467.51,80.68 472.66,91.40 474.79,97.90 479.46,112.12 492.66,136.84 500.19,145.46 503.19,148.90 507.75,156.81 510.32,163.04 514.04,172.09 517.41,175.02 527.02,177.57 545.30,182.41 546.03,182.18 548.15,170.89 548.15,170.89 548.15,170.89 548.15,170.89 Z -------------------------------------------------------------------------------- /ggseg/data/dk/cuneus_left: -------------------------------------------------------------------------------- 1 | M 864.06,951.54 C 882.20,941.10 883.61,940.81 907.03,942.56 907.03,942.56 931.25,944.38 931.25,944.38 931.25,944.38 924.22,933.11 924.22,933.11 920.35,926.90 912.62,916.12 907.03,909.16 901.44,902.19 896.87,895.17 896.87,893.55 896.87,891.94 894.81,885.68 892.28,879.63 888.27,870.03 886.90,869.05 881.47,871.96 878.05,873.79 868.65,884.76 860.58,896.34 852.51,907.92 841.73,922.81 836.61,929.43 827.12,941.72 817.48,967.49 820.52,972.42 822.20,975.13 827.60,972.54 864.06,951.54 864.06,951.54 864.06,951.54 864.06,951.54 Z -------------------------------------------------------------------------------- /ggseg/data/dk/isthmuscingulate_right: -------------------------------------------------------------------------------- 1 | M 1333.96,332.79 C 1345.61,317.87 1347.24,314.01 1345.49,305.44 1344.38,299.96 1341.68,277.19 1339.49,254.84 1335.26,211.47 1327.72,187.88 1316.12,181.67 1312.64,179.80 1304.42,178.32 1297.86,178.36 1282.06,178.48 1251.74,188.71 1250.86,194.22 1250.46,196.69 1262.65,206.72 1278.98,217.34 1278.98,217.34 1307.80,236.09 1307.80,236.09 1307.80,236.09 1316.18,259.53 1316.18,259.53 1325.52,285.63 1327.13,310.10 1320.31,322.04 1315.59,330.29 1313.96,350.16 1318.01,350.16 1319.32,350.16 1326.50,342.35 1333.96,332.79 Z -------------------------------------------------------------------------------- /ggseg/data/dk/caudalanteriorcingulate_left: -------------------------------------------------------------------------------- 1 | M 1462.58,923.44 C 1468.34,908.28 1465.93,904.20 1434.73,876.28 1382.27,829.34 1371.55,822.58 1335.56,813.75 1327.06,811.66 1322.59,824.16 1324.92,843.50 1326.47,856.37 1327.36,857.42 1341.22,862.66 1349.28,865.71 1359.67,871.19 1364.30,874.83 1368.93,878.47 1374.50,881.45 1376.67,881.45 1378.84,881.45 1388.11,887.08 1397.26,893.95 1406.41,900.83 1415.52,906.45 1417.51,906.45 1419.49,906.45 1426.92,912.08 1434.00,918.95 1449.02,933.53 1458.19,934.97 1462.58,923.44 1462.58,923.44 1462.58,923.44 1462.58,923.44 Z -------------------------------------------------------------------------------- /ggseg/data/dk/isthmuscingulate_left: -------------------------------------------------------------------------------- 1 | M 1050.79,1013.15 C 1052.50,1006.60 1048.98,998.79 1039.67,988.51 1033.94,982.18 1033.65,979.89 1036.67,965.07 1039.82,949.65 1047.50,925.37 1053.77,911.09 1055.28,907.62 1069.12,895.88 1084.51,884.99 1106.56,869.40 1112.50,863.61 1112.50,857.66 1112.50,833.20 1046.79,830.13 1034.02,853.99 1028.04,865.17 1021.95,891.39 1021.91,906.15 1021.89,916.02 1018.78,925.44 1010.94,939.47 995.37,967.31 996.12,971.55 1021.09,996.99 1043.48,1019.80 1048.36,1022.46 1050.79,1013.15 1050.79,1013.15 1050.79,1013.15 1050.79,1013.15 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Right-Lateral-Ventricle: -------------------------------------------------------------------------------- 1 | M 682.76,584.88 C 669.17,525.33 671.33,518.15 702.57,518.86 718.80,519.22 724.78,517.34 756.25,501.97 804.15,478.57 836.16,465.33 844.84,465.33 860.53,465.33 877.00,497.67 866.96,508.76 864.22,511.79 861.98,516.70 861.98,519.67 861.98,522.64 857.93,528.86 852.97,533.49 842.83,542.97 819.23,583.33 817.68,593.84 816.12,604.45 791.23,611.33 744.88,613.98 723.25,615.21 704.81,617.43 703.89,618.91 702.97,620.40 699.73,621.61 696.68,621.61 692.17,621.61 689.59,614.81 682.76,584.88 682.76,584.88 682.76,584.88 682.76,584.88 Z -------------------------------------------------------------------------------- /ggseg/data/dk/caudalmiddlefrontal_left: -------------------------------------------------------------------------------- 1 | M 208.85,830.40 C 211.14,828.60 217.27,818.61 222.48,808.20 227.69,797.78 233.71,787.15 235.86,784.57 238.01,781.99 247.83,764.41 257.67,745.50 267.52,726.60 278.26,708.22 281.54,704.67 290.29,695.21 288.91,692.98 275.78,695.41 243.18,701.45 187.21,726.62 163.44,745.93 163.44,745.93 150.33,756.59 150.33,756.59 150.33,756.59 159.54,777.12 159.54,777.12 164.60,788.41 168.75,799.79 168.75,802.41 168.75,805.03 173.69,813.90 179.73,822.13 190.97,837.44 197.52,839.30 208.85,830.40 208.85,830.40 208.85,830.40 208.85,830.40 Z -------------------------------------------------------------------------------- /ggseg/data/jhu/Cingulum (cingulate gyrus) L: -------------------------------------------------------------------------------- 1 | M 1912.24,640.70 C 1908.76,641.35 1902.41,641.04 1898.11,640.01 1893.81,638.98 1890.35,636.79 1890.41,635.15 1890.47,633.51 1891.69,623.03 1893.11,611.86 1894.54,600.69 1896.92,589.24 1898.40,586.41 1899.89,583.58 1905.32,579.80 1910.48,578.00 1915.63,576.21 1920.40,575.71 1921.07,576.89 1921.75,578.08 1924.74,590.18 1927.72,603.79 1927.72,603.79 1933.14,628.52 1933.14,628.52 1933.14,628.52 1925.85,634.02 1925.85,634.02 1921.83,637.05 1915.71,640.06 1912.24,640.70 1912.24,640.70 1912.24,640.70 1912.24,640.70 Z -------------------------------------------------------------------------------- /ggseg/data/dk/rostralmiddlefrontal_right: -------------------------------------------------------------------------------- 1 | M 691.89,329.29 C 705.24,290.13 689.63,229.35 654.25,182.65 641.60,165.95 604.94,131.97 592.23,125.17 580.84,119.07 575.00,123.06 575.00,136.94 575.00,144.83 572.32,152.56 567.19,159.52 554.85,176.25 556.52,189.50 573.73,211.50 581.63,221.59 589.34,233.04 590.87,236.95 592.40,240.86 595.43,244.61 597.61,245.29 599.78,245.96 611.81,249.50 624.34,253.15 650.74,260.84 655.51,266.39 664.44,299.84 671.43,326.01 680.82,347.67 684.26,345.54 685.72,344.64 689.15,337.33 691.89,329.29 691.89,329.29 691.89,329.29 691.89,329.29 Z -------------------------------------------------------------------------------- /ggseg/data/dk/pericalcarine_left: -------------------------------------------------------------------------------- 1 | M 869.21,1014.53 C 880.64,1011.86 893.74,1008.25 898.32,1006.50 902.91,1004.76 911.21,1003.33 916.78,1003.33 923.93,1003.33 930.30,1000.22 938.45,992.76 944.80,986.94 950.00,980.72 950.00,978.93 950.00,977.15 946.46,971.48 942.14,966.35 935.67,958.65 930.45,956.36 912.55,953.34 892.19,949.90 889.87,950.13 875.88,956.87 867.66,960.83 855.31,967.78 848.44,972.30 841.56,976.83 832.07,982.88 827.34,985.75 817.99,991.44 815.78,1004.44 822.15,1016.34 825.95,1023.46 831.98,1023.23 869.21,1014.53 869.21,1014.53 869.21,1014.53 869.21,1014.53 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/CC_Central: -------------------------------------------------------------------------------- 1 | M 2297.78,464.45 C 2263.61,461.47 2263.12,461.31 2259.77,452.44 2257.06,445.26 2254.47,443.45 2246.90,443.45 2246.90,443.45 2237.43,443.45 2237.43,443.45 2237.43,443.45 2245.27,425.47 2245.27,425.47 2253.74,406.05 2261.39,397.75 2266.30,402.65 2268.02,404.38 2271.41,404.52 2274.28,402.99 2277.03,401.53 2288.57,399.34 2299.93,398.13 2318.08,396.19 2323.23,396.95 2342.20,404.36 2373.51,416.60 2376.11,418.96 2371.80,431.34 2369.86,436.90 2364.71,447.53 2360.36,454.95 2351.40,470.24 2356.11,469.52 2297.78,464.44 2297.78,464.44 2297.78,464.45 2297.78,464.45 Z -------------------------------------------------------------------------------- /ggseg/data/dk/inferiorparietal_right: -------------------------------------------------------------------------------- 1 | M 118.75,282.07 C 128.84,275.21 132.21,274.72 162.41,275.67 162.41,275.67 195.13,276.69 195.13,276.69 195.13,276.69 200.75,261.55 200.75,261.55 207.71,242.80 207.74,241.32 202.01,196.36 196.72,154.86 197.89,118.76 204.87,108.11 209.13,101.62 209.10,100.71 204.54,98.96 201.76,97.89 190.04,97.02 178.48,97.02 160.73,97.02 155.29,98.41 143.35,105.97 115.61,123.57 51.51,205.53 48.15,227.70 45.67,244.03 52.29,260.72 66.82,274.80 77.11,284.77 99.29,294.45 104.69,291.31 106.41,290.31 112.73,286.15 118.75,282.07 118.75,282.07 118.75,282.07 118.75,282.07 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Right-Putamen: -------------------------------------------------------------------------------- 1 | M 939.30,877.76 C 926.99,870.09 920.25,860.51 917.56,846.84 917.00,844.01 920.07,841.67 925.74,840.59 937.76,838.29 958.67,808.93 958.78,794.20 958.86,784.15 949.88,763.73 937.17,745.08 928.31,732.08 928.40,700.12 937.36,675.65 946.88,649.62 948.89,648.20 962.82,657.67 973.99,665.26 983.85,679.40 983.88,687.88 983.97,708.65 1001.82,732.00 1021.71,737.36 1036.20,741.26 1036.23,741.55 1027.67,791.96 1018.08,848.40 1017.17,851.08 1001.09,869.91 986.21,887.32 986.01,887.42 969.61,886.89 957.70,886.50 949.27,883.96 939.30,877.76 939.30,877.76 939.30,877.76 939.30,877.76 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Left-Lateral-Ventricle: -------------------------------------------------------------------------------- 1 | M 539.05,598.30 C 521.06,593.18 511.00,584.97 513.05,577.11 513.88,573.95 510.15,564.61 504.65,556.06 499.21,547.61 491.94,536.04 488.49,530.36 485.03,524.68 479.06,518.64 475.20,516.94 469.02,514.21 468.20,511.56 468.20,494.13 468.20,494.13 468.20,474.40 468.20,474.40 468.20,474.40 481.48,468.37 481.48,468.37 507.51,456.55 520.46,460.66 588.07,502.15 615.32,518.88 617.54,519.66 635.76,519.03 661.31,518.14 664.23,521.59 659.50,547.06 655.18,570.28 645.73,590.40 636.27,596.52 626.34,602.95 559.62,604.17 539.05,598.30 539.05,598.30 539.05,598.30 539.05,598.30 Z -------------------------------------------------------------------------------- /ggseg/data/dk/insula_left: -------------------------------------------------------------------------------- 1 | M 247.99,1061.78 C 253.34,1050.85 265.41,1036.34 283.51,1019.07 298.60,1004.69 327.11,977.28 346.87,958.17 368.09,937.65 388.25,921.03 396.09,917.59 403.40,914.38 409.37,910.74 409.37,909.49 409.37,903.24 389.14,904.07 367.19,911.24 354.19,915.48 341.77,918.95 339.58,918.95 331.59,918.95 257.32,941.02 240.62,948.36 231.17,952.51 217.37,957.69 209.95,959.87 192.06,965.11 188.79,972.77 189.33,1008.12 189.78,1037.71 193.55,1049.66 206.02,1060.94 211.91,1066.28 232.62,1077.41 237.91,1078.09 239.00,1078.23 243.54,1070.89 247.99,1061.78 247.99,1061.78 247.99,1061.78 247.99,1061.78 Z -------------------------------------------------------------------------------- /ggseg/data/dk/postcentral_right: -------------------------------------------------------------------------------- 1 | M 423.33,246.19 C 425.24,240.57 425.78,231.24 424.55,225.15 423.34,219.14 420.68,204.37 418.65,192.34 411.29,148.77 378.58,93.17 339.16,57.20 328.31,47.30 316.53,33.40 312.97,26.31 309.42,19.21 304.23,12.53 301.44,11.46 292.52,8.04 266.50,9.37 263.24,13.42 257.40,20.67 255.92,36.69 259.67,52.05 264.48,71.76 267.38,75.14 279.43,75.14 293.17,75.14 318.71,92.10 334.00,111.37 340.94,120.13 352.13,138.68 358.86,152.60 369.82,175.26 371.34,181.36 373.34,210.77 374.60,229.23 377.18,244.95 379.22,246.64 383.37,250.09 416.48,259.18 418.55,257.44 419.30,256.81 421.45,251.75 423.33,246.19 Z -------------------------------------------------------------------------------- /ggseg/data/dk/superiorparietal_right: -------------------------------------------------------------------------------- 1 | M 141.26,94.68 C 153.78,86.40 155.78,86.08 195.22,86.08 229.70,86.08 237.56,85.17 244.96,80.34 252.23,75.59 253.38,73.15 251.63,66.27 250.46,61.70 248.75,47.65 247.84,35.05 246.17,12.17 246.16,12.14 237.93,14.12 214.68,19.71 189.88,35.09 163.96,59.98 138.66,84.27 122.18,103.27 126.42,103.27 127.43,103.27 134.11,99.40 141.26,94.68 141.26,94.68 141.26,94.68 141.26,94.68 Z 2 | M 1466.80,170.31 C 1463.65,165.51 1460.68,163.42 1459.98,165.53 1458.70,169.35 1468.69,182.50 1471.06,180.13 1471.78,179.41 1469.86,174.99 1466.80,170.31 1466.80,170.31 1466.80,170.31 1466.80,170.31 Z 3 | -------------------------------------------------------------------------------- /ggseg/data/aseg/Left-Putamen: -------------------------------------------------------------------------------- 1 | M 327.88,872.82 C 314.42,858.13 309.26,850.28 310.80,846.87 312.02,844.18 313.83,823.69 314.83,801.34 316.60,761.60 316.89,760.29 327.93,741.95 334.14,731.64 345.84,710.91 353.93,695.90 367.12,671.43 380.84,655.99 389.39,655.99 391.07,655.99 394.20,660.25 396.36,665.45 401.09,676.89 398.94,695.69 390.02,720.70 385.27,734.06 383.06,750.12 381.65,781.76 381.65,781.76 379.74,824.69 379.74,824.69 379.74,824.69 388.03,831.22 388.03,831.22 392.59,834.80 396.26,839.40 396.19,841.42 395.93,848.75 360.31,891.99 353.75,892.93 349.00,893.61 341.80,888.02 327.88,872.82 327.88,872.82 327.88,872.82 327.88,872.82 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Left-Thalamus: -------------------------------------------------------------------------------- 1 | M 598.23,801.48 C 591.54,797.37 585.21,792.78 584.17,791.29 583.12,789.80 575.94,786.61 568.21,784.20 552.89,779.44 534.14,762.21 507.27,728.19 477.94,691.08 476.48,686.20 485.03,654.08 490.30,634.29 491.34,632.51 509.43,612.54 509.43,612.54 524.09,596.34 524.09,596.34 524.09,596.34 542.69,601.16 542.69,601.16 552.93,603.81 567.42,606.00 574.91,606.01 611.54,606.08 619.29,608.74 639.66,628.19 639.66,628.19 658.84,646.50 658.84,646.50 658.84,646.50 658.62,681.72 658.62,681.72 658.10,763.28 650.21,795.87 628.80,804.81 615.07,810.55 612.54,810.28 598.23,801.48 598.23,801.48 598.23,801.48 598.23,801.48 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Right-Thalamus: -------------------------------------------------------------------------------- 1 | M 691.66,794.31 C 677.83,761.58 674.70,740.89 674.57,681.30 674.47,636.75 674.53,636.33 680.60,641.82 688.64,649.10 696.01,645.95 698.35,634.26 699.38,629.10 702.29,623.16 704.82,621.06 707.56,618.79 725.39,616.41 748.98,615.17 774.30,613.85 794.00,611.11 803.72,607.57 803.72,607.57 818.90,602.04 818.90,602.04 818.90,602.04 826.24,611.04 826.24,611.04 837.67,625.07 843.23,645.18 843.23,672.52 843.23,694.30 842.04,699.55 833.46,715.64 822.91,735.44 799.21,759.15 777.49,771.65 770.02,775.94 753.81,788.95 741.48,800.56 710.14,830.05 706.58,829.60 691.66,794.31 691.66,794.31 691.66,794.31 691.66,794.31 Z -------------------------------------------------------------------------------- /ggseg/data/dk/supramarginal_right: -------------------------------------------------------------------------------- 1 | M 350.60,246.92 C 356.95,245.15 362.87,241.29 363.76,238.34 364.65,235.38 364.25,221.01 362.85,206.40 360.04,176.81 347.47,147.46 324.70,117.29 312.19,100.73 286.49,84.52 272.73,84.52 259.56,84.52 230.78,97.69 219.66,108.82 219.66,108.82 208.45,120.03 208.45,120.03 208.45,120.03 210.44,165.56 210.44,165.56 211.53,190.60 213.30,214.21 214.36,218.02 216.98,227.39 224.66,229.22 239.46,224.00 250.61,220.07 252.90,220.21 262.63,225.39 268.58,228.55 278.57,231.20 284.84,231.27 291.24,231.34 304.05,235.51 314.06,240.78 334.03,251.29 334.55,251.37 350.60,246.92 350.60,246.92 350.60,246.92 350.60,246.92 Z -------------------------------------------------------------------------------- /ggseg/data/dk/middletemporal_right: -------------------------------------------------------------------------------- 1 | M 450.20,484.44 C 469.07,474.34 449.03,458.07 335.26,391.07 314.26,378.71 291.23,363.71 284.08,357.73 274.71,349.90 269.29,347.44 264.68,348.90 255.19,351.91 233.59,350.90 223.19,346.95 208.93,341.55 201.12,332.38 193.55,312.14 184.31,287.42 177.65,283.21 151.09,285.35 120.40,287.81 108.44,299.19 113.86,320.78 115.17,325.98 127.83,336.34 155.52,354.87 177.41,369.50 198.83,384.02 203.12,387.13 219.56,399.00 231.66,406.82 244.50,413.84 251.82,417.85 265.79,426.02 275.53,432.01 285.28,438.00 304.26,446.84 317.72,451.64 331.18,456.45 351.84,464.54 363.64,469.61 398.56,484.63 437.41,491.28 450.20,484.44 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Right-Amygdala: -------------------------------------------------------------------------------- 1 | M 955.74,1015.76 C 953.16,1014.31 943.57,1011.38 934.43,1009.24 915.99,1004.92 861.98,971.51 861.98,964.42 861.98,958.31 852.35,950.56 843.23,949.32 836.89,948.45 834.73,945.60 831.80,934.18 827.74,918.41 826.14,920.74 861.43,891.14 875.79,879.10 879.69,877.50 901.44,874.74 925.32,871.72 925.67,871.78 940.56,881.33 955.28,890.78 980.62,922.11 986.90,938.63 989.67,945.92 989.24,946.69 982.37,946.69 973.27,946.69 958.86,952.83 958.86,956.72 958.86,958.25 960.85,963.34 963.27,968.03 971.46,983.87 977.80,1013.40 973.59,1016.08 968.69,1019.19 961.63,1019.06 955.74,1015.76 955.74,1015.76 955.74,1015.76 955.74,1015.76 Z -------------------------------------------------------------------------------- /ggseg/data/dk/medial_right: -------------------------------------------------------------------------------- 1 | M 1103.12,498.45 C 1093.31,495.04 1083.86,487.89 1071.87,474.81 1050.79,451.81 1041.10,448.88 1000.12,453.12 937.81,459.57 877.58,445.59 844.08,416.92 809.98,387.72 797.85,333.99 812.47,276.82 834.26,191.64 905.49,113.47 1005.13,65.41 1038.50,49.31 1112.03,23.40 1136.89,18.97 1144.96,17.54 1161.40,14.12 1173.44,11.37 1186.82,8.32 1209.87,6.36 1232.81,6.33 1345.29,6.18 1389.23,35.61 1480.25,172.03 1543.47,266.78 1550.75,281.83 1551.22,318.80 1551.51,341.75 1550.49,347.34 1543.92,358.83 1532.95,377.97 1497.21,399.46 1465.04,406.25 1321.72,436.52 1299.54,442.53 1237.81,467.81 1154.48,501.96 1129.56,507.62 1103.12,498.45 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Left-Hippocampus: -------------------------------------------------------------------------------- 1 | M 355.35,1059.42 C 335.04,1046.66 327.57,1036.10 327.57,1020.19 327.57,993.96 338.20,974.82 352.78,974.82 357.51,974.82 376.62,971.22 395.24,966.82 424.04,960.01 433.62,956.01 459.56,939.98 476.33,929.62 490.88,919.78 491.90,918.13 494.33,914.19 501.31,920.06 512.48,935.43 520.26,946.15 521.33,950.36 521.33,970.22 521.33,992.00 521.02,992.94 512.61,996.42 507.82,998.41 501.84,1003.38 499.33,1007.47 496.82,1011.55 483.38,1025.36 469.47,1038.15 469.47,1038.15 444.18,1061.39 444.18,1061.39 444.18,1061.39 416.13,1064.99 416.13,1064.99 376.59,1070.06 371.56,1069.60 355.35,1059.42 355.35,1059.42 355.35,1059.42 355.35,1059.42 Z -------------------------------------------------------------------------------- /ggseg/data/dk/lingual_left: -------------------------------------------------------------------------------- 1 | M 1048.35,1069.75 C 1047.08,1066.74 1045.07,1058.53 1043.90,1051.51 1041.10,1034.71 1031.06,1018.95 1013.09,1003.13 1013.09,1003.13 998.45,990.24 998.45,990.24 998.45,990.24 975.01,992.37 975.01,992.37 955.07,994.19 950.16,995.84 942.19,1003.43 935.33,1009.96 927.78,1013.17 914.06,1015.40 903.75,1017.07 891.35,1019.96 886.51,1021.82 881.68,1023.69 874.46,1025.21 870.49,1025.21 866.51,1025.21 857.85,1027.47 851.24,1030.24 851.24,1030.24 839.21,1035.26 839.21,1035.26 839.21,1035.26 847.82,1042.66 847.82,1042.66 867.43,1059.53 944.03,1073.71 1021.43,1074.80 1048.16,1075.18 1050.47,1074.74 1048.35,1069.75 1048.35,1069.75 1048.35,1069.75 1048.35,1069.75 Z -------------------------------------------------------------------------------- /ggseg/data/dk/posteriorcingulate_left: -------------------------------------------------------------------------------- 1 | M 1201.56,856.21 C 1223.21,852.17 1243.87,851.76 1275.30,854.74 1311.01,858.14 1313.75,856.49 1314.08,831.38 1314.30,814.37 1313.44,811.41 1307.04,807.22 1298.65,801.71 1268.44,794.07 1254.69,793.97 1249.53,793.94 1241.09,791.70 1235.94,789.00 1228.73,785.24 1218.97,784.33 1193.75,785.09 1175.70,785.64 1150.28,784.90 1137.26,783.45 1114.96,780.96 1113.09,781.24 1105.04,788.16 1099.09,793.28 1095.94,799.62 1094.68,808.98 1092.95,821.89 1093.51,823.06 1108.16,837.35 1116.56,845.55 1125.31,854.67 1127.60,857.62 1131.19,862.24 1135.50,862.72 1158.85,861.06 1173.75,860.00 1192.97,857.82 1201.56,856.21 1201.56,856.21 1201.56,856.21 1201.56,856.21 Z -------------------------------------------------------------------------------- /ggseg/data/dk/lateral_right: -------------------------------------------------------------------------------- 1 | M 395.31,501.27 C 370.62,497.46 331.19,483.90 242.19,448.61 188.91,427.48 139.69,408.47 132.81,406.37 125.94,404.27 106.25,396.87 89.06,389.93 22.17,362.93 -0.00,339.61 -0.00,296.26 -0.00,280.16 2.00,272.36 10.93,253.73 36.18,201.04 105.67,104.21 151.56,57.76 182.49,26.45 211.26,9.37 243.75,3.02 265.49,-1.23 336.21,-0.93 360.91,3.52 465.33,22.32 555.84,64.13 616.88,121.79 638.34,142.06 667.33,179.92 682.45,207.45 716.82,270.01 716.31,330.43 681.10,365.64 655.15,391.59 620.08,403.52 556.25,408.12 511.67,411.34 502.68,417.16 482.81,455.69 469.66,481.17 465.13,487.12 454.32,493.09 441.28,500.28 413.68,504.11 395.31,501.27 395.31,501.27 395.31,501.27 395.31,501.27 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Right-Hippocampus: -------------------------------------------------------------------------------- 1 | M 896.86,1075.09 C 883.39,1069.19 870.94,1060.30 857.94,1047.30 839.48,1028.83 838.54,1027.10 830.16,996.03 830.16,996.03 821.49,963.88 821.49,963.88 821.49,963.88 828.02,958.41 828.02,958.41 831.61,955.40 838.66,952.94 843.68,952.94 850.79,952.94 854.23,955.34 859.19,963.74 868.73,979.91 913.38,1006.35 946.36,1015.36 960.97,1019.35 973.79,1023.46 974.86,1024.50 975.92,1025.54 977.62,1030.88 978.65,1036.37 980.45,1046.01 980.12,1046.38 968.90,1047.31 958.52,1048.17 957.14,1049.32 955.74,1058.29 954.47,1066.42 951.35,1069.81 939.16,1076.26 930.91,1080.64 922.47,1084.12 920.41,1083.99 918.36,1083.87 907.76,1079.86 896.86,1075.09 896.86,1075.09 896.86,1075.09 896.86,1075.09 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Right-VentralDC: -------------------------------------------------------------------------------- 1 | M 740.31,904.17 C 732.69,899.48 716.52,892.46 704.37,888.56 682.64,881.60 682.29,881.32 683.14,871.40 683.61,865.85 688.30,853.24 693.55,843.39 701.34,828.77 704.93,825.10 712.98,823.49 718.95,822.29 729.25,815.20 739.02,805.55 752.24,792.49 756.57,789.94 762.83,791.51 769.68,793.23 770.70,795.58 772.60,814.20 773.77,825.63 776.71,839.72 779.13,845.51 779.13,845.51 783.53,856.04 783.53,856.04 783.53,856.04 824.11,856.04 824.11,856.04 863.91,856.04 880.73,858.84 880.73,865.46 880.73,867.29 875.42,874.48 868.94,881.43 858.33,892.80 854.00,894.85 825.97,901.75 808.82,905.97 785.65,910.15 774.47,911.05 756.26,912.52 752.72,911.81 740.31,904.17 740.31,904.17 740.31,904.17 740.31,904.17 Z -------------------------------------------------------------------------------- /ggseg/data/dk/postcentral_left: -------------------------------------------------------------------------------- 1 | M 364.40,901.44 C 371.09,898.65 377.59,894.77 378.86,892.82 380.12,890.86 381.17,879.18 381.20,866.85 381.26,838.25 391.82,793.60 402.25,777.84 409.52,766.86 438.24,745.37 465.05,730.87 470.47,727.94 475.37,722.40 476.13,718.37 476.87,714.38 479.06,700.75 480.99,688.07 482.91,675.39 486.91,660.92 489.87,655.90 497.11,643.65 492.48,640.92 464.32,640.86 464.32,640.86 442.70,640.81 442.70,640.81 442.70,640.81 421.48,663.47 421.48,663.47 409.82,675.93 391.71,700.19 381.25,717.38 319.09,819.51 319.82,818.16 315.70,839.92 308.63,877.25 308.22,893.28 314.10,902.26 319.02,909.78 320.59,910.22 335.83,908.43 344.86,907.37 357.72,904.22 364.40,901.44 364.40,901.44 364.40,901.44 364.40,901.44 Z -------------------------------------------------------------------------------- /ggseg/data/dk/inferiorparietal_left: -------------------------------------------------------------------------------- 1 | M 668.94,932.92 C 677.53,928.57 691.89,923.63 700.87,921.95 709.84,920.26 718.94,916.52 721.09,913.63 726.28,906.66 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462.72,899.37 449.46,903.73 443.07,904.93 428.83,907.60 423.69,913.30 426.27,923.57 430.73,941.34 408.30,971.24 373.50,993.91 356.96,1004.69 352.49,1006.34 347.30,1003.56 343.86,1001.72 340.59,996.49 340.05,991.95 339.08,983.81 338.74,983.96 316.35,1002.70 275.59,1036.81 250.30,1069.61 250.07,1088.65 249.92,1100.52 266.08,1125.22 273.99,1125.22 276.34,1125.22 284.21,1119.90 291.48,1113.39 Z -------------------------------------------------------------------------------- /ggseg/data/dk/precentral_right: -------------------------------------------------------------------------------- 1 | M 476.23,267.09 C 477.27,264.37 478.12,259.64 478.12,256.58 478.12,253.52 482.21,245.88 487.20,239.60 493.20,232.04 498.01,220.34 501.43,205.00 506.50,182.18 506.47,181.59 499.72,168.32 495.94,160.90 489.59,150.56 485.61,145.33 481.63,140.10 474.72,127.44 470.25,117.20 446.07,61.80 440.05,52.20 420.47,37.88 410.07,30.28 395.63,22.27 388.39,20.09 368.14,14.00 327.38,9.01 324.16,12.23 319.53,16.86 330.73,34.50 348.74,50.96 373.99,74.04 394.25,101.37 412.07,136.38 422.95,157.77 428.12,171.72 428.12,179.69 428.12,186.15 430.37,200.08 433.12,210.64 436.04,221.89 437.37,235.22 436.34,242.82 434.38,257.25 437.52,261.59 454.38,267.75 468.38,272.86 474.08,272.69 476.23,267.09 476.23,267.09 476.23,267.09 476.23,267.09 Z -------------------------------------------------------------------------------- /ggseg/data/dk/precuneus_right: -------------------------------------------------------------------------------- 1 | M 1403.75,299.79 C 1408.66,293.98 1415.63,283.60 1419.22,276.72 1422.81,269.85 1430.21,258.59 1435.66,251.72 1455.48,226.72 1468.75,206.26 1468.75,200.73 1468.75,197.62 1464.50,191.00 1459.30,186.02 1454.07,181.01 1447.86,170.27 1445.40,161.99 1438.10,137.40 1419.56,105.37 1402.20,87.36 1385.88,70.42 1319.77,28.27 1309.53,28.27 1305.13,28.27 1304.46,32.85 1304.56,62.01 1304.68,94.14 1304.20,96.70 1294.53,115.19 1283.51,136.27 1281.17,156.10 1288.94,162.55 1291.45,164.63 1299.53,167.09 1306.91,168.01 1315.21,169.05 1323.55,172.71 1328.82,177.61 1342.19,190.06 1346.47,208.00 1351.34,272.03 1354.03,307.31 1358.60,313.83 1379.31,311.84 1392.14,310.61 1396.34,308.53 1403.75,299.79 1403.75,299.79 1403.75,299.79 1403.75,299.79 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Left-VentralDC: -------------------------------------------------------------------------------- 1 | M 501.02,889.26 C 473.51,876.64 447.57,865.22 443.36,863.89 443.36,863.89 435.71,861.48 435.71,861.48 435.71,861.48 442.93,855.63 442.93,855.63 452.30,848.04 468.79,848.18 491.64,856.04 505.21,860.71 517.95,862.29 541.99,862.29 541.99,862.29 574.18,862.29 574.18,862.29 574.18,862.29 576.15,851.78 576.15,851.78 577.63,843.89 576.10,837.28 570.04,825.31 565.59,816.54 561.96,805.18 561.96,800.08 561.96,791.12 562.37,790.86 573.48,792.66 592.29,795.72 628.08,818.67 636.03,832.77 645.02,848.73 647.56,864.91 643.45,880.16 643.45,880.16 640.13,892.49 640.13,892.49 640.13,892.49 608.08,902.46 608.08,902.46 590.45,907.94 570.40,912.38 563.52,912.33 554.76,912.25 536.05,905.35 501.02,889.26 501.02,889.26 501.02,889.26 501.02,889.26 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/CC_Mid_Anterior: -------------------------------------------------------------------------------- 1 | M 2456.90,524.58 C 2443.82,521.99 2429.90,513.92 2390.99,486.32 2379.39,478.10 2366.74,470.57 2362.87,469.58 2356.01,467.82 2352.76,459.07 2358.97,459.07 2360.68,459.07 2362.09,456.96 2362.09,454.39 2362.09,451.81 2363.58,449.70 2365.40,449.70 2367.22,449.70 2367.91,448.41 2366.94,446.84 2365.97,445.27 2366.55,443.51 2368.23,442.93 2369.91,442.36 2371.72,439.07 2372.25,435.63 2374.71,419.64 2388.20,416.68 2402.76,428.93 2407.57,432.99 2417.56,437.27 2424.95,438.45 2435.44,440.13 2442.52,444.47 2457.27,458.26 2467.66,467.97 2481.29,482.32 2487.56,490.15 2487.56,490.15 2498.96,504.40 2498.96,504.40 2498.96,504.40 2492.45,516.12 2492.45,516.12 2485.42,528.79 2482.14,529.57 2456.90,524.58 2456.90,524.58 2456.90,524.58 2456.90,524.58 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/CC_Posterior: -------------------------------------------------------------------------------- 1 | M 1977.24,575.17 C 1962.24,560.17 1962.06,559.76 1962.10,540.01 1962.15,504.28 1964.22,498.61 1985.11,476.95 2008.76,452.42 2032.86,438.31 2055.83,435.54 2065.28,434.40 2076.75,430.84 2081.32,427.63 2088.55,422.56 2090.12,422.39 2093.42,426.37 2095.50,428.89 2098.93,430.94 2101.03,430.94 2103.13,430.94 2107.28,433.63 2110.25,436.91 2115.40,442.60 2115.34,442.98 2109.00,444.99 2102.41,447.08 2102.42,447.17 2110.34,454.50 2126.75,469.71 2116.92,504.84 2094.69,510.42 2089.42,511.74 2085.09,516.20 2082.10,523.36 2078.78,531.30 2075.06,534.77 2068.49,536.09 2062.03,537.38 2058.88,540.25 2057.46,546.15 2049.72,578.28 2051.08,576.48 2029.19,583.66 1999.34,593.46 1994.79,592.72 1977.24,575.17 1977.24,575.17 1977.24,575.17 1977.24,575.17 Z -------------------------------------------------------------------------------- /ggseg/data/dk/precentral_left: -------------------------------------------------------------------------------- 1 | M 289.29,921.69 C 296.96,919.76 303.90,917.10 304.72,915.78 305.54,914.45 303.95,907.97 301.19,901.36 295.66,888.13 296.37,877.75 305.64,836.13 310.13,815.98 315.43,804.27 332.95,775.76 344.91,756.30 362.59,727.47 372.25,711.69 381.90,695.91 397.02,674.84 405.84,664.88 429.53,638.10 429.02,637.67 382.99,645.72 350.15,651.46 338.45,655.92 320.82,669.43 304.24,682.13 300.00,687.37 300.00,695.14 300.00,698.59 296.60,705.00 292.44,709.39 288.28,713.78 278.27,730.03 270.18,745.50 262.09,760.97 251.55,779.96 246.75,787.69 241.96,795.43 234.11,809.84 229.31,819.72 229.31,819.72 220.58,837.68 220.58,837.68 220.58,837.68 229.42,865.03 229.42,865.03 234.28,880.08 242.66,899.73 248.03,908.71 258.89,926.83 263.33,928.23 289.29,921.69 289.29,921.69 289.29,921.69 289.29,921.69 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/CC_Mid_Posterior: -------------------------------------------------------------------------------- 1 | M 2118.32,475.34 C 2118.32,463.87 2116.71,458.59 2111.89,454.22 2111.89,454.22 2105.46,448.40 2105.46,448.40 2105.46,448.40 2112.25,445.89 2112.25,445.89 2117.64,443.90 2118.29,442.48 2115.40,439.01 2112.47,435.47 2113.51,434.25 2120.90,432.63 2125.92,431.52 2133.67,431.54 2138.13,432.66 2144.60,434.29 2147.98,432.79 2154.94,425.21 2165.16,414.06 2174.05,410.30 2200.03,406.11 2215.24,403.66 2220.43,403.93 2225.44,407.44 2229.21,410.08 2235.32,411.14 2240.66,410.07 2245.57,409.09 2249.58,409.13 2249.58,410.17 2249.58,411.20 2245.89,419.58 2241.38,428.78 2233.07,445.72 2210.32,465.33 2198.96,465.33 2196.11,465.33 2191.77,467.33 2189.31,469.79 2181.10,478.00 2157.57,486.63 2137.86,488.64 2137.86,488.64 2118.32,490.64 2118.32,490.64 2118.32,490.64 2118.32,475.34 2118.32,475.34 Z -------------------------------------------------------------------------------- /ggseg/data/dk/medial_left: -------------------------------------------------------------------------------- 1 | M 1214.06,1162.99 C 1203.75,1159.94 1172.81,1148.25 1145.31,1137.00 1072.02,1107.02 1048.98,1100.79 946.34,1083.24 876.59,1071.31 855.43,1064.98 834.89,1049.87 813.95,1034.47 807.73,1019.68 808.32,986.69 809.08,944.96 818.49,927.19 911.65,791.69 951.53,733.69 975.23,710.25 1014.23,690.22 1055.47,669.04 1085.21,662.38 1140.51,661.92 1188.56,661.52 1206.52,663.90 1266.98,678.70 1354.75,700.19 1434.00,742.39 1494.43,799.83 1573.10,874.60 1604.66,956.71 1581.65,1026.77 1570.68,1060.18 1552.59,1081.28 1521.12,1097.36 1491.73,1112.38 1469.99,1116.19 1404.69,1117.77 1372.03,1118.56 1340.49,1119.97 1334.59,1120.90 1326.99,1122.09 1317.91,1128.29 1303.34,1142.20 1292.05,1152.99 1278.03,1163.42 1272.19,1165.39 1257.38,1170.38 1236.12,1169.50 1214.06,1162.99 1214.06,1162.99 1214.06,1162.99 1214.06,1162.99 Z -------------------------------------------------------------------------------- /ggseg/data/dk/corpuscallosum_right: -------------------------------------------------------------------------------- 1 | M 994.96,369.49 C 995.82,368.09 994.56,361.41 992.15,354.64 986.88,339.85 986.18,308.47 990.91,299.62 994.70,292.55 1029.28,275.72 1075.64,258.37 1109.72,245.63 1136.53,243.53 1164.27,251.41 1172.75,253.82 1185.22,256.75 1191.99,257.91 1207.42,260.57 1237.10,275.40 1250.64,287.21 1269.97,304.08 1284.80,302.72 1296.42,283.04 1310.32,259.47 1303.61,244.80 1269.49,224.21 1269.49,224.21 1244.62,209.20 1244.62,209.20 1244.62,209.20 1193.40,207.02 1193.40,207.02 1120.54,203.92 1067.01,205.52 1049.44,211.31 1041.40,213.96 1029.25,220.17 1022.43,225.11 1015.61,230.05 1003.21,237.59 994.86,241.87 971.79,253.70 946.74,280.84 943.52,297.50 939.86,316.47 940.01,343.18 943.83,350.31 949.35,360.64 969.28,372.04 981.79,372.04 988.16,372.04 994.09,370.89 994.96,369.49 994.96,369.49 994.96,369.49 994.96,369.49 Z -------------------------------------------------------------------------------- /ggseg/data/dk/middletemporal_left: -------------------------------------------------------------------------------- 1 | M 331.25,1143.74 C 355.72,1139.28 400.65,1126.76 409.80,1121.86 413.43,1119.92 422.51,1113.67 429.97,1107.97 437.43,1102.28 450.97,1094.80 460.05,1091.35 494.77,1078.18 525.65,1061.99 542.96,1047.87 565.56,1029.44 591.77,1013.55 607.19,1008.93 615.12,1006.56 623.34,1000.28 631.89,990.06 644.30,975.24 644.62,974.30 641.89,960.55 639.56,948.84 637.06,945.20 627.65,939.77 612.54,931.07 605.78,934.76 588.29,961.26 567.64,992.54 552.11,1000.27 495.06,1007.64 459.06,1012.29 449.67,1016.23 414.37,1041.49 407.67,1046.29 400.87,1050.21 399.26,1050.21 397.65,1050.21 390.48,1054.22 383.32,1059.12 376.17,1064.03 366.80,1070.31 362.50,1073.09 321.00,1099.92 281.01,1133.46 283.33,1139.49 285.22,1144.42 299.63,1150.12 306.25,1148.56 308.83,1147.95 320.08,1145.78 331.25,1143.74 331.25,1143.74 331.25,1143.74 331.25,1143.74 Z -------------------------------------------------------------------------------- /ggseg/data/jhu/Superior longitudinal fasciculus L: -------------------------------------------------------------------------------- 1 | M 1643.08,685.72 C 1630.15,687.25 1626.90,686.52 1621.86,680.94 1616.43,674.93 1612.58,674.35 1578.35,674.35 1578.35,674.35 1540.79,674.35 1540.79,674.35 1540.79,674.35 1547.54,667.17 1547.54,667.17 1553.61,660.70 1553.81,659.50 1549.49,655.18 1545.17,650.86 1545.18,649.97 1549.61,646.29 1554.07,642.59 1554.01,641.62 1548.99,635.95 1544.59,630.99 1544.32,629.39 1547.69,628.21 1550.02,627.40 1579.55,612.66 1613.31,595.45 1651.94,575.76 1679.36,559.70 1687.30,552.09 1695.69,544.04 1702.79,539.99 1708.50,539.99 1716.02,539.99 1716.69,540.74 1713.85,546.04 1712.07,549.36 1710.62,556.59 1710.62,562.09 1710.62,567.60 1705.19,583.51 1698.55,597.45 1691.92,611.39 1682.72,634.23 1678.11,648.21 1673.50,662.19 1667.16,675.94 1664.04,678.77 1660.91,681.60 1651.48,684.73 1643.08,685.72 1643.08,685.72 1643.08,685.72 1643.08,685.72 Z -------------------------------------------------------------------------------- /ggseg/data/dk/lateral_left: -------------------------------------------------------------------------------- 1 | M 298.90,1165.76 C 280.41,1160.22 268.59,1148.81 252.66,1121.13 230.33,1082.32 223.60,1078.37 170.86,1073.06 88.25,1064.75 58.76,1054.79 30.72,1025.74 5.73,999.87 -1.07,980.20 0.80,939.27 2.53,901.31 13.11,871.17 38.10,833.00 60.09,799.41 113.00,747.07 149.80,722.50 198.74,689.82 266.50,660.17 317.68,649.04 329.44,646.48 348.91,642.03 360.94,639.16 393.89,631.28 482.52,629.15 501.93,635.76 510.08,638.54 519.81,640.81 523.57,640.81 533.68,640.81 570.87,660.46 591.24,676.57 604.78,687.27 621.75,708.50 662.13,765.21 691.32,806.21 718.39,845.28 722.28,852.01 726.17,858.75 732.57,868.58 736.49,873.85 747.57,888.75 761.57,921.91 765.31,942.10 774.09,989.64 752.65,1022.74 699.24,1044.09 685.05,1049.76 648.83,1062.44 618.75,1072.26 588.67,1082.09 533.83,1102.04 496.87,1116.61 375.21,1164.56 331.27,1175.47 298.90,1165.76 298.90,1165.76 298.90,1165.76 298.90,1165.76 Z -------------------------------------------------------------------------------- /ggseg/data/dk/superiorfrontal_right: -------------------------------------------------------------------------------- 1 | M 504.53,59.78 C 501.07,56.45 445.49,34.52 440.51,34.52 431.91,34.52 442.75,41.18 460.29,46.67 470.96,50.01 484.61,54.91 490.62,57.57 503.23,63.13 508.96,64.05 504.53,59.78 504.53,59.78 504.53,59.78 504.53,59.78 Z 2 | M 854.09,333.13 C 856.58,330.63 859.61,323.25 860.82,316.72 862.04,310.19 865.37,302.24 868.23,299.05 871.09,295.87 877.65,285.84 882.81,276.77 918.35,214.27 963.47,177.95 1034.37,154.75 1048.98,149.97 1063.75,144.27 1067.19,142.08 1070.62,139.89 1082.58,136.52 1093.75,134.60 1116.53,130.67 1134.37,125.54 1134.37,122.92 1134.37,121.97 1132.84,116.07 1130.97,109.83 1128.58,101.84 1128.49,89.21 1130.69,67.27 1132.41,50.12 1132.81,35.02 1131.58,33.72 1126.40,28.26 1039.59,59.45 993.03,83.49 917.45,122.53 857.73,185.63 830.87,254.80 821.43,279.10 813.26,323.86 816.64,332.68 819.17,339.28 847.60,339.61 854.09,333.13 854.09,333.13 854.09,333.13 854.09,333.13 Z 3 | -------------------------------------------------------------------------------- /ggseg/data/dk/NA_right: -------------------------------------------------------------------------------- 1 | M 1160.97,462.83 C 1184.37,454.73 1200.46,445.47 1263.77,403.70 1290.95,385.77 1303.12,368.01 1303.12,346.30 1303.12,337.33 1305.67,326.17 1309.37,318.91 1316.29,305.35 1317.25,294.78 1312.21,287.66 1309.28,283.51 1308.68,283.51 1307.06,287.62 1306.05,290.19 1301.35,296.16 1296.60,300.91 1289.75,307.76 1285.10,309.53 1273.97,309.53 1262.48,309.53 1257.56,307.52 1246.58,298.34 1220.68,276.71 1186.54,264.51 1134.14,258.19 1113.67,255.72 1097.18,260.48 1039.25,285.61 1004.52,300.66 1001.75,302.51 999.24,312.19 995.15,327.99 1001.66,354.73 1011.11,360.92 1025.72,370.50 1020.06,378.62 996.87,381.33 985.08,382.71 982.64,384.15 981.77,390.31 980.36,400.30 991.66,411.87 1011.55,420.78 1020.47,424.78 1029.23,430.76 1030.99,434.06 1032.76,437.36 1038.85,440.93 1044.53,442.00 1050.20,443.06 1060.34,448.50 1067.06,454.08 1094.94,477.26 1114.16,479.05 1160.97,462.83 1160.97,462.83 1160.97,462.83 1160.97,462.83 Z -------------------------------------------------------------------------------- /ggseg/data/jhu/Superior longitudinal fasciculus R: -------------------------------------------------------------------------------- 1 | M 2404.17,701.06 C 2399.09,705.66 2398.51,705.58 2396.75,700.06 2395.01,694.58 2390.50,693.90 2344.45,692.18 2316.73,691.15 2293.02,689.18 2291.76,687.80 2290.49,686.42 2287.09,656.67 2284.20,621.70 2281.30,586.73 2279.46,557.58 2280.11,556.94 2280.75,556.29 2288.80,558.62 2297.99,562.12 2307.18,565.61 2319.05,570.71 2324.37,573.46 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/ggseg/data/aseg/CC_Anterior: -------------------------------------------------------------------------------- 1 | M 2482.41,665.31 C 2473.82,661.84 2463.64,657.66 2459.81,656.03 2459.81,656.03 2452.83,653.05 2452.83,653.05 2452.83,653.05 2459.33,642.02 2459.33,642.02 2463.93,634.22 2468.06,630.99 2473.42,630.99 2478.48,630.99 2486.17,625.56 2496.63,614.59 2514.79,595.55 2514.82,593.69 2497.68,557.92 2491.86,545.77 2487.10,534.11 2487.10,532.01 2487.10,529.92 2490.05,523.19 2493.66,517.08 2498.57,508.75 2502.30,505.97 2508.50,506.00 2522.51,506.07 2529.90,509.29 2534.09,517.11 2536.30,521.24 2541.04,525.49 2544.64,526.56 2552.96,529.04 2579.96,554.90 2585.79,565.98 2588.23,570.62 2590.23,577.34 2590.23,580.92 2590.23,584.50 2592.34,588.23 2594.92,589.22 2598.07,590.43 2599.61,595.39 2599.61,604.37 2599.61,612.42 2597.75,619.26 2594.92,621.61 2592.34,623.75 2590.23,628.17 2590.23,631.43 2590.23,638.01 2575.94,662.25 2572.07,662.25 2570.71,662.25 2568.10,660.74 2566.27,658.91 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387.39,1145.21 398.44,1140.99 398.44,1140.99 398.44,1140.99 385.94,1142.89 385.94,1142.89 379.06,1143.93 369.22,1146.69 364.06,1149.02 364.06,1149.02 354.69,1153.26 354.69,1153.26 354.69,1153.26 365.51,1151.35 365.51,1151.35 371.47,1150.29 381.31,1147.53 387.39,1145.21 Z M 489.06,1109.06 C 554.56,1083.81 642.70,1043.69 647.09,1037.13 648.07,1035.67 650.71,1025.25 652.95,1013.98 658.69,985.07 654.20,981.37 636.59,1000.53 628.82,1008.99 618.39,1016.51 611.10,1018.91 594.71,1024.31 573.39,1037.09 549.36,1055.92 530.54,1070.66 495.62,1089.17 468.69,1098.67 461.75,1101.12 448.31,1108.45 438.83,1114.95 429.35,1121.46 416.39,1129.98 410.02,1133.90 398.70,1140.86 398.65,1140.97 407.81,1138.90 412.97,1137.73 449.53,1124.31 489.06,1109.06 489.06,1109.06 489.06,1109.06 489.06,1109.06 Z 2 | -------------------------------------------------------------------------------- /ggseg/data/aseg/4th-Ventricle: -------------------------------------------------------------------------------- 1 | M 1917.31,1082.17 C 1916.18,1081.05 1916.13,1074.71 1917.19,1068.08 1918.79,1058.05 1917.60,1053.84 1910.12,1043.03 1901.96,1031.25 1901.14,1027.68 1901.31,1004.77 1901.46,984.84 1903.27,975.17 1909.90,958.94 1919.96,934.34 1920.01,933.57 1912.09,926.40 1908.67,923.31 1901.46,913.88 1896.05,905.46 1896.05,905.46 1886.22,890.15 1886.22,890.15 1886.22,890.15 1892.80,883.14 1892.80,883.14 1896.42,879.29 1905.58,874.48 1913.16,872.45 1931.30,867.60 1943.50,856.90 1963.65,828.16 1972.79,815.13 1984.04,800.95 1988.66,796.65 1997.55,788.36 2008.94,768.54 2008.94,761.33 2008.94,758.96 2012.81,755.08 2017.53,752.71 2022.26,750.34 2026.95,747.97 2027.97,747.43 2031.42,745.60 2024.51,785.66 2017.86,806.03 2014.22,817.20 2004.37,843.48 1995.99,864.41 1987.60,885.35 1979.91,907.15 1978.88,912.86 1977.86,918.57 1970.84,941.58 1963.29,964.00 1955.74,986.42 1949.56,1009.43 1949.56,1015.12 1949.56,1027.98 1934.40,1078.70 1929.63,1081.83 1925.24,1084.70 1919.98,1084.85 1917.30,1082.17 1917.30,1082.17 1917.31,1082.17 1917.31,1082.17 Z -------------------------------------------------------------------------------- /ggseg/data/dk/corpuscallosum_left: -------------------------------------------------------------------------------- 1 | M 1434.34,1025.63 C 1452.77,1014.52 1456.15,1006.87 1456.20,976.15 1456.20,976.15 1456.25,950.52 1456.25,950.52 1456.25,950.52 1444.53,941.77 1444.53,941.77 1438.08,936.96 1428.84,929.15 1423.98,924.43 1419.12,919.70 1413.49,915.81 1411.48,915.80 1409.46,915.79 1401.70,910.91 1394.24,904.98 1386.78,899.04 1377.64,893.27 1373.93,892.14 1370.22,891.02 1362.70,886.74 1357.22,882.63 1351.73,878.53 1339.08,873.11 1329.09,870.60 1304.16,864.34 1228.64,863.67 1167.19,869.17 1167.19,869.17 1117.19,873.64 1117.19,873.64 1117.19,873.64 1090.22,893.11 1090.22,893.11 1054.13,919.17 1050.73,931.05 1073.08,952.98 1092.65,972.18 1099.48,971.61 1143.75,947.04 1163.52,936.07 1185.63,921.75 1192.90,915.21 1192.90,915.21 1206.11,903.33 1206.11,903.33 1206.11,903.33 1243.85,903.33 1243.85,903.33 1274.86,903.33 1286.67,904.76 1310.09,911.34 1341.07,920.05 1352.92,925.24 1359.22,932.83 1361.47,935.54 1369.80,941.30 1377.75,945.64 1405.34,960.71 1414.22,987.58 1401.60,1017.80 1398.89,1024.27 1397.42,1031.51 1398.34,1033.89 1400.65,1039.93 1416.73,1036.24 1434.34,1025.63 1434.34,1025.63 1434.34,1025.63 1434.34,1025.63 Z -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- 1 | MIT License 2 | 3 | Copyright (c) 2021 ggseg - LCBC - University of Oslo 4 | 5 | Permission is hereby granted, free of charge, to any person obtaining a copy 6 | of this software and associated documentation files (the "Software"), to deal 7 | in the Software without restriction, including without limitation the rights 8 | to use, copy, modify, merge, publish, distribute, sublicense, and/or sell 9 | copies of the Software, and to permit persons to whom the Software is 10 | furnished to do so, subject to the following conditions: 11 | 12 | The above copyright notice and this permission notice shall be included in all 13 | copies or substantial portions of the Software. 14 | 15 | THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 16 | IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 17 | FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE 18 | AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 19 | LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, 20 | OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE 21 | SOFTWARE. 22 | -------------------------------------------------------------------------------- /ggseg/data/jhu/Cingulum (hippocampus) L: -------------------------------------------------------------------------------- 1 | M 3608.38,916.53 C 3605.00,916.62 3602.38,918.60 3597.47,923.30 3592.63,927.94 3588.67,934.33 3588.67,937.51 3588.67,942.25 3589.75,942.70 3594.71,940.05 3598.03,938.27 3601.55,936.81 3602.52,936.81 3603.49,936.81 3604.29,939.39 3604.29,942.54 3604.29,945.70 3605.23,949.21 3606.37,950.36 3607.52,951.50 3615.96,952.44 3625.12,952.44 3634.38,952.44 3641.78,951.02 3641.78,949.25 3641.78,947.49 3638.15,940.55 3633.70,933.83 3629.09,926.87 3621.44,920.16 3615.94,918.24 3612.70,917.11 3610.40,916.48 3608.38,916.53 Z M 2246.39,1139.91 C 2242.01,1139.91 2231.83,1143.43 2223.76,1147.72 2215.69,1152.02 2207.32,1155.53 2205.16,1155.53 2202.99,1155.53 2201.22,1156.83 2201.22,1158.40 2201.22,1159.98 2203.98,1167.71 2207.36,1175.59 2210.74,1183.46 2214.35,1189.90 2215.38,1189.90 2216.41,1189.90 2220.00,1188.44 2223.35,1186.65 2228.07,1184.12 2229.86,1184.47 2231.29,1188.21 2232.31,1190.86 2234.35,1193.03 2235.82,1193.03 2237.29,1193.03 2240.00,1190.22 2241.84,1186.78 2243.68,1183.34 2248.13,1180.53 2251.72,1180.53 2257.37,1180.53 2257.98,1179.21 2256.30,1170.77 2255.22,1165.40 2254.34,1156.26 2254.34,1150.46 2254.34,1141.24 2253.34,1139.91 2246.39,1139.91 Z -------------------------------------------------------------------------------- /ggseg/data/jhu/Cingulum (hippocampus) R: -------------------------------------------------------------------------------- 1 | M 3608.38,916.53 C 3605.00,916.62 3602.38,918.60 3597.47,923.30 3592.63,927.94 3588.67,934.33 3588.67,937.51 3588.67,942.25 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2254.34,1141.24 2253.34,1139.91 2246.39,1139.91 Z -------------------------------------------------------------------------------- /ggseg/data/dk/superiorparietal_left: -------------------------------------------------------------------------------- 1 | M 1576.38,974.92 C 1576.23,951.47 1574.54,940.90 1568.04,922.69 1536.73,835.05 1446.11,754.82 1324.21,706.83 1297.05,696.13 1238.51,680.45 1234.65,682.83 1233.10,683.79 1233.29,690.30 1235.10,697.83 1236.85,705.14 1238.18,726.30 1238.03,744.85 1237.78,778.13 1237.88,778.62 1245.65,781.57 1249.99,783.22 1258.85,784.57 1265.36,784.57 1271.87,784.57 1281.69,786.14 1287.19,788.05 1292.68,789.97 1308.71,794.79 1322.81,798.76 1384.72,816.21 1383.74,815.62 1448.52,873.64 1469.63,892.55 1490.40,910.43 1494.69,913.39 1506.85,921.77 1533.67,959.53 1535.89,971.39 1537.00,977.28 1540.15,986.80 1542.89,992.55 1546.95,1001.06 1549.97,1003.24 1559.10,1004.19 1565.26,1004.83 1571.72,1005.12 1573.44,1004.84 1575.28,1004.53 1576.49,992.24 1576.38,974.92 1576.38,974.92 1576.38,974.92 1576.38,974.92 Z 2 | M 652.76,771.29 C 644.66,755.93 606.16,704.22 594.83,693.48 573.45,673.20 531.45,650.18 515.84,650.18 505.32,650.18 495.23,666.41 490.65,690.68 487.65,706.56 487.34,714.87 489.60,718.48 493.82,725.21 547.01,740.34 567.40,740.61 589.97,740.91 611.00,748.28 634.37,764.10 645.55,771.66 655.09,777.96 655.58,778.09 656.07,778.21 654.80,775.15 652.76,771.29 652.76,771.29 652.76,771.29 652.76,771.29 Z 3 | -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- 1 | import setuptools 2 | from ggseg import __version__ 3 | 4 | 5 | import os.path as op 6 | this_directory = op.abspath(op.dirname(__file__)) 7 | with open(op.join(this_directory, 'README.md')) as f: 8 | long_description = f.read() 9 | 10 | setuptools.setup( 11 | name='ggseg', 12 | version=__version__, 13 | summary='Python module for ggseg-like visualizations', 14 | author='Greg Operto', 15 | author_email='goperto@barcelonabeta.org', 16 | url='https://github.com/ggseg/python-ggseg', 17 | packages=setuptools.find_packages(), 18 | description='Python module for ggseg-like visualizations', 19 | long_description=long_description, 20 | long_description_content_type='text/markdown', 21 | 22 | license='MIT', 23 | classifiers=[ 24 | 'Intended Audience :: Developers', 25 | 'Intended Audience :: Science/Research', 26 | 'Intended Audience :: Education', 27 | 'License :: OSI Approved :: MIT License', 28 | 'Operating System :: OS Independent', 29 | 'Topic :: Scientific/Engineering', 30 | 'Topic :: Utilities', 31 | 'Programming Language :: Python :: 3.8', 32 | ], 33 | install_requires=['matplotlib>=3.4', 34 | 'numpy>=1.21'], 35 | platforms='any', 36 | include_package_data=True 37 | ) 38 | -------------------------------------------------------------------------------- /.github/workflows/main.yml: -------------------------------------------------------------------------------- 1 | # This is a basic workflow to help you get started with Actions 2 | 3 | name: CI 4 | 5 | # Controls when the workflow will run 6 | on: 7 | # Triggers the workflow on push or pull request events but only for the main branch 8 | push: 9 | branches: [ main ] 10 | pull_request: 11 | branches: [ main ] 12 | 13 | # Allows you to run this workflow manually from the Actions tab 14 | workflow_dispatch: 15 | 16 | # A workflow run is made up of one or more jobs that can run sequentially or in parallel 17 | jobs: 18 | # This workflow contains a single job called "build" 19 | build: 20 | # The type of runner that the job will run on 21 | runs-on: ubuntu-latest 22 | 23 | # Steps represent a sequence of tasks that will be executed as part of the job 24 | steps: 25 | # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it 26 | - uses: actions/checkout@v2 27 | 28 | - run: sudo apt-get update 29 | - run: pip install -r requirements-dev.txt 30 | - run: nosetests ggseg/tests --nocapture --nologcapture --with-coverage --cover-erase --cover-inclusive --cover-package . 31 | env: 32 | CI_TEST: 0 33 | PYTHONPATH: $PYTHONPATH:$(pwd) 34 | - run: coveralls --service=github 35 | env: 36 | GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} 37 | -------------------------------------------------------------------------------- /ggseg/data/jhu/Superior longitudinal fasciculus (temporal part) R: -------------------------------------------------------------------------------- 1 | M 828.44,886.64 C 828.44,886.64 821.10,899.58 821.10,899.58 817.05,906.70 810.32,916.59 806.14,921.56 801.73,926.80 797.62,936.82 796.36,945.42 795.16,953.57 793.07,963.23 791.71,966.88 790.34,970.55 790.56,974.84 792.18,976.46 794.03,978.31 793.33,982.99 790.34,989.00 786.61,996.47 786.29,1000.57 788.90,1007.43 790.75,1012.28 791.39,1019.68 790.34,1023.88 789.20,1028.41 789.96,1032.47 792.20,1033.85 794.27,1035.14 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-------------------------------------------------------------------------------- /ggseg/data/aseg/Brain-Stem: -------------------------------------------------------------------------------- 1 | M 1959.59,1220.88 C 1949.82,1210.48 1943.31,1189.24 1943.31,1167.79 1943.31,1157.45 1941.69,1133.36 1939.71,1114.26 1936.20,1080.51 1936.34,1078.74 1944.39,1051.40 1948.96,1035.93 1952.69,1018.06 1952.69,1011.69 1952.69,1005.32 1958.24,984.54 1965.02,965.52 1971.81,946.49 1979.44,922.78 1981.99,912.83 1984.54,902.88 1993.72,876.96 2002.39,855.24 2020.11,810.81 2030.82,773.19 2030.82,755.35 2030.82,755.35 2030.82,743.35 2030.82,743.35 2030.82,743.35 2021.15,748.35 2021.15,748.35 2015.83,751.10 2011.10,752.90 2010.64,752.34 2006.48,747.39 2002.69,736.03 2002.69,728.53 2002.69,708.49 2053.97,665.37 2077.80,665.37 2084.33,665.37 2091.14,663.31 2093.32,660.68 2098.51,654.43 2105.79,654.75 2110.69,661.46 2113.68,665.55 2113.79,667.98 2111.15,671.18 2108.38,674.51 2110.11,677.73 2119.15,686.01 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-------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | # Byte-compiled / optimized / DLL files 2 | __pycache__/ 3 | *.py[cod] 4 | *$py.class 5 | 6 | # C extensions 7 | *.so 8 | 9 | # Distribution / packaging 10 | .Python 11 | build/ 12 | develop-eggs/ 13 | dist/ 14 | downloads/ 15 | eggs/ 16 | .eggs/ 17 | lib/ 18 | lib64/ 19 | parts/ 20 | sdist/ 21 | var/ 22 | wheels/ 23 | pip-wheel-metadata/ 24 | share/python-wheels/ 25 | *.egg-info/ 26 | .installed.cfg 27 | *.egg 28 | MANIFEST 29 | 30 | # PyInstaller 31 | # Usually these files are written by a python script from a template 32 | # before PyInstaller builds the exe, so as to inject date/other infos into it. 33 | *.manifest 34 | *.spec 35 | 36 | # Installer logs 37 | pip-log.txt 38 | pip-delete-this-directory.txt 39 | 40 | # Unit test / coverage reports 41 | htmlcov/ 42 | .tox/ 43 | .nox/ 44 | .coverage 45 | .coverage.* 46 | .cache 47 | nosetests.xml 48 | coverage.xml 49 | *.cover 50 | *.py,cover 51 | .hypothesis/ 52 | .pytest_cache/ 53 | 54 | # Translations 55 | *.mo 56 | *.pot 57 | 58 | # Django stuff: 59 | *.log 60 | local_settings.py 61 | db.sqlite3 62 | db.sqlite3-journal 63 | 64 | # Flask stuff: 65 | instance/ 66 | .webassets-cache 67 | 68 | # Scrapy stuff: 69 | .scrapy 70 | 71 | # Sphinx documentation 72 | docs/_build/ 73 | 74 | # PyBuilder 75 | target/ 76 | 77 | # Jupyter Notebook 78 | .ipynb_checkpoints 79 | 80 | # IPython 81 | profile_default/ 82 | ipython_config.py 83 | 84 | # pyenv 85 | .python-version 86 | 87 | # pipenv 88 | # According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. 89 | # However, in case of collaboration, if having platform-specific dependencies or dependencies 90 | # having no cross-platform support, pipenv may install dependencies that don't work, or not 91 | # install all needed dependencies. 92 | #Pipfile.lock 93 | 94 | # PEP 582; used by e.g. github.com/David-OConnor/pyflow 95 | __pypackages__/ 96 | 97 | # Celery stuff 98 | celerybeat-schedule 99 | celerybeat.pid 100 | 101 | # SageMath parsed files 102 | *.sage.py 103 | 104 | # Environments 105 | .env 106 | .venv 107 | env/ 108 | venv/ 109 | ENV/ 110 | env.bak/ 111 | venv.bak/ 112 | 113 | # Spyder project settings 114 | .spyderproject 115 | .spyproject 116 | 117 | # Rope project settings 118 | .ropeproject 119 | 120 | # mkdocs documentation 121 | /site 122 | 123 | # mypy 124 | .mypy_cache/ 125 | .dmypy.json 126 | dmypy.json 127 | 128 | # Pyre type checker 129 | .pyre/ 130 | -------------------------------------------------------------------------------- /ggseg/data/jhu/Inferior longitudinal fasciculus R: -------------------------------------------------------------------------------- 1 | M 3098.88,761.84 C 3098.88,761.84 3097.10,803.24 3097.10,803.24 3096.12,826.01 3094.63,850.26 3093.79,857.14 3092.94,864.01 3090.93,880.28 3089.31,893.30 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3544.74,685.27 3541.80,669.67 3539.68,658.46 3536.79,648.56 3535.38,647.69 3535.20,647.58 3534.91,647.53 3534.51,647.54 Z M 2101.08,746.22 C 2098.13,746.22 2092.00,751.09 2087.45,757.05 2081.84,764.41 2074.95,769.02 2065.99,771.41 2058.73,773.34 2050.53,776.93 2047.77,779.40 2043.41,783.29 2042.23,783.25 2038.79,779.10 2036.62,776.48 2033.61,774.34 2032.10,774.34 2030.59,774.34 2029.35,777.21 2029.35,780.71 2029.35,784.22 2026.52,790.93 2023.05,795.62 2017.37,803.30 2016.71,809.14 2016.46,854.08 2016.31,881.54 2017.20,909.28 2018.43,915.72 2020.01,923.95 2022.31,927.44 2026.15,927.44 2029.17,927.44 2035.53,933.06 2040.29,939.94 2045.05,946.81 2049.88,952.44 2051.00,952.44 2052.12,952.44 2057.78,941.54 2063.56,928.22 2071.58,909.75 2074.34,898.57 2075.18,881.09 2075.99,864.08 2078.19,854.82 2083.74,845.16 2088.93,836.11 2091.87,824.76 2093.36,807.93 2094.55,794.61 2096.80,783.71 2098.37,783.71 2099.94,783.71 2101.22,780.98 2101.22,777.64 2101.22,774.31 2099.71,770.64 2097.85,769.49 2095.70,768.17 2097.43,764.31 2102.58,758.93 2107.04,754.28 2109.73,749.52 2108.56,748.35 2107.39,747.18 2104.02,746.22 2101.08,746.22 Z -------------------------------------------------------------------------------- /ggseg/data/jhu/Inferior longitudinal fasciculus L: -------------------------------------------------------------------------------- 1 | M 3816.47,750.48 C 3815.44,750.50 3814.51,750.63 3813.77,750.87 3810.79,751.81 3806.76,756.07 3804.82,760.34 3802.88,764.60 3799.32,768.09 3796.92,768.09 3794.51,768.09 3790.71,770.30 3788.46,773.01 3786.04,775.92 3785.56,778.80 3787.29,780.04 3788.90,781.20 3790.67,786.37 3791.22,791.52 3791.76,796.68 3792.93,826.67 3793.81,858.18 3795.22,908.61 3794.79,916.14 3790.22,921.19 3786.22,925.61 3785.79,928.34 3788.34,933.10 3791.04,938.14 3788.48,946.02 3774.55,975.55 3760.20,1005.97 3756.31,1011.81 3750.40,1011.85 3746.52,1011.88 3741.87,1012.93 3740.07,1014.20 3738.27,1015.46 3733.00,1023.07 3728.35,1031.11 3723.71,1039.15 3719.91,1049.55 3719.91,1054.23 3719.91,1058.91 3716.51,1069.91 3712.34,1078.67 3707.95,1087.93 3702.55,1109.00 3699.45,1128.97 3696.04,1150.96 3692.14,1165.60 3688.65,1169.59 3685.65,1173.03 3681.61,1178.91 3679.67,1182.67 3677.74,1186.42 3676.16,1193.71 3676.16,1198.87 3676.16,1204.03 3674.79,1211.85 3673.11,1216.26 3671.44,1220.66 3671.21,1224.26 3672.59,1224.27 3674.00,1224.27 3683.11,1222.67 3692.87,1220.71 3707.53,1217.77 3710.95,1215.84 3712.50,1209.69 3713.53,1205.59 3717.14,1200.75 3720.54,1198.94 3724.98,1196.55 3726.19,1193.62 3724.87,1188.38 3723.87,1184.38 3722.20,1178.89 3721.16,1176.18 3719.84,1172.73 3721.95,1170.21 3728.18,1167.81 3728.18,1167.81 3737.09,1164.38 3737.09,1164.38 3737.09,1164.38 3728.15,1160.68 3728.15,1160.68 3728.15,1160.68 3719.20,1156.99 3719.20,1156.99 3719.20,1156.99 3736.42,1134.27 3736.42,1134.27 3748.46,1118.38 3753.13,1109.65 3751.97,1105.22 3750.86,1100.98 3753.36,1095.60 3759.55,1088.94 3764.62,1083.46 3773.25,1069.03 3778.71,1056.86 3784.18,1044.69 3788.65,1032.15 3788.65,1028.98 3788.65,1025.82 3792.32,1013.98 3796.81,1002.67 3801.30,991.37 3806.58,980.14 3808.53,977.72 3810.70,975.04 3812.28,957.97 3812.58,933.98 3812.85,912.34 3812.86,889.01 3812.58,882.13 3812.33,875.26 3812.34,858.39 3812.62,844.64 3813.01,825.46 3815.62,812.25 3823.79,787.87 3823.79,787.87 3834.44,756.10 3834.44,756.10 3834.44,756.10 3826.81,752.62 3826.81,752.62 3823.66,751.19 3819.58,750.39 3816.47,750.48 Z M 2419.81,969.74 C 2418.25,969.75 2415.84,972.46 2414.07,976.35 2410.69,983.77 2409.92,984.04 2405.01,979.61 2400.12,975.18 2398.71,975.53 2388.87,983.55 2388.87,983.55 2378.09,992.35 2378.09,992.35 2378.09,992.35 2388.31,1014.52 2388.31,1014.52 2393.93,1026.71 2397.64,1038.12 2396.56,1039.87 2395.48,1041.62 2392.57,1043.05 2390.09,1043.05 2386.65,1043.05 2385.59,1047.67 2385.59,1062.66 2385.59,1075.43 2383.88,1084.72 2380.69,1089.28 2376.15,1095.75 2376.28,1097.10 2382.36,1106.94 2385.99,1112.81 2390.66,1118.29 2392.74,1119.13 2394.82,1119.98 2397.01,1120.78 2397.60,1120.92 2398.19,1121.06 2402.24,1118.35 2406.61,1114.91 2412.29,1110.45 2419.29,1108.67 2431.11,1108.67 2445.82,1108.67 2448.39,1107.65 2454.13,1099.59 2457.68,1094.60 2460.58,1088.59 2460.58,1086.23 2460.58,1083.87 2454.23,1071.73 2446.46,1059.25 2438.14,1045.87 2430.45,1028.58 2427.75,1017.14 2425.24,1006.47 2423.16,991.85 2423.13,984.65 2423.11,977.44 2421.89,970.81 2420.42,969.90 2420.24,969.79 2420.03,969.74 2419.81,969.74 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Cerebellum-Cortex: -------------------------------------------------------------------------------- 1 | M 1898.63,869.82 C 1901.06,868.49 1914.74,872.06 1923.93,867.25 1934.88,861.51 1949.06,846.21 1963.08,825.02 1963.08,825.02 1974.30,808.06 1974.30,808.06 1974.30,808.06 1967.06,801.35 1967.06,801.35 1962.55,797.17 1959.01,789.25 1957.68,780.38 1956.48,772.42 1952.83,763.67 1949.42,760.58 1942.58,754.39 1941.21,743.65 1947.21,743.27 1952.04,742.96 1949.55,742.03 1926.90,735.64 1910.24,730.94 1908.93,729.89 1908.93,721.37 1908.93,716.31 1910.66,709.41 1912.78,706.02 1916.17,700.58 1914.86,698.08 1901.40,684.41 1893.03,675.91 1883.91,669.03 1881.14,669.14 1878.38,669.25 1873.69,668.30 1870.72,667.05 1869.73,666.63 1868.83,666.40 1868.01,666.40 1865.54,666.39 1863.70,668.34 1861.68,672.75 1858.77,679.15 1856.92,680.15 1852.44,677.75 1844.34,673.41 1843.30,673.92 1843.30,682.13 1843.30,688.86 1841.69,689.66 1824.95,691.17 1783.10,694.97 1770.22,720.44 1782.61,774.94 1785.75,788.75 1789.10,796.65 1791.80,796.65 1794.14,796.65 1796.89,798.00 1797.90,799.64 1800.29,803.49 1791.44,824.79 1787.46,824.79 1779.65,824.79 1774.54,820.33 1774.54,813.50 1774.54,808.71 1769.97,801.88 1761.84,794.54 1754.86,788.22 1747.09,779.08 1744.57,774.22 1738.14,761.78 1733.92,763.26 1733.92,777.97 1733.92,790.43 1733.86,790.50 1726.62,785.76 1719.57,781.14 1718.85,781.52 1706.30,796.40 1692.14,813.20 1691.38,815.56 1697.15,824.80 1700.39,829.99 1699.77,833.23 1693.24,845.18 1686.34,857.81 1685.48,863.11 1685.48,892.88 1685.48,892.88 1685.48,926.37 1685.48,926.37 1685.48,926.37 1694.07,927.36 1694.07,927.36 1701.52,928.22 1702.66,929.73 1702.66,938.70 1702.66,945.58 1704.78,950.49 1708.98,953.34 1714.34,956.98 1714.83,959.15 1712.32,967.76 1709.95,975.90 1710.86,981.70 1716.92,997.17 1721.07,1007.77 1726.94,1019.17 1729.97,1022.52 1739.36,1032.89 1759.81,1042.89 1775.30,1044.67 1783.45,1045.60 1792.59,1047.81 1795.62,1049.57 1798.64,1051.33 1808.08,1052.82 1816.59,1052.86 1837.59,1052.99 1862.39,1038.27 1870.15,1021.08 1873.15,1014.43 1880.85,1004.24 1887.27,998.44 1894.22,992.16 1899.83,983.68 1901.15,977.45 1902.37,971.70 1906.26,960.16 1909.81,951.80 1913.97,941.99 1915.24,935.25 1913.38,932.80 1911.79,930.71 1905.57,922.18 1899.55,913.83 1893.54,905.49 1886.15,896.10 1883.15,892.98 1879.25,888.93 1878.87,887.30 1881.82,887.30 1881.82,887.30 1880.18,887.95 1880.18,887.95 1880.18,887.95 1875.70,890.26 1868.34,891.56 1862.15,892.66 1855.80,892.90 1850.50,892.90 1849.56,892.52 1841.04,886.48 1834.87,876.94 1830.25,869.80 1830.66,864.88 1830.70,863.52 1830.48,861.34 1835.69,849.67 1835.69,837.86 1835.69,826.45 1834.21,820.10 1834.21,820.10 1834.21,820.10 1829.83,808.70 1829.83,808.70 1829.83,808.70 1826.63,794.11 1826.63,794.11 1826.63,794.11 1838.33,794.38 1838.33,794.38 1838.33,794.38 1842.08,808.75 1842.08,808.75 1842.08,808.75 1847.23,818.17 1847.23,818.17 1847.23,818.17 1851.25,824.42 1851.25,824.42 1851.25,824.42 1861.59,835.96 1861.59,835.96 1861.59,835.96 1867.07,840.12 1867.07,840.12 1867.07,840.12 1885.93,849.33 1885.93,849.33 1885.93,849.33 1894.08,854.35 1894.08,854.35 1894.08,854.35 1897.28,863.28 1897.28,863.28 1897.28,863.28 1897.53,870.91 1897.53,870.91 1897.53,870.91 1897.83,871.36 1897.83,871.36 1898.64,869.46 1896.80,870.81 1898.63,869.82 -------------------------------------------------------------------------------- /ggseg/data/jhu/Anterior thalamic radiation L: -------------------------------------------------------------------------------- 1 | M 348.37,261.91 C 345.30,261.91 342.01,265.90 340.23,271.80 338.58,277.24 334.42,283.22 330.99,285.08 327.55,286.94 323.65,289.87 322.31,291.59 320.98,293.31 320.58,298.54 321.43,303.21 322.49,309.02 321.37,312.60 317.86,314.57 313.50,317.01 314.16,318.18 322.26,322.37 327.51,325.08 332.66,329.57 333.73,332.35 334.80,335.13 335.67,339.65 335.67,342.38 335.67,345.11 337.97,349.88 340.77,352.97 343.72,356.24 347.21,368.80 349.08,382.90 350.84,396.27 352.45,417.75 352.66,430.63 352.92,446.69 355.63,461.96 361.26,479.13 365.79,492.92 373.27,512.60 377.88,522.88 382.50,533.15 391.02,554.53 396.83,570.38 402.63,586.23 411.67,607.71 416.92,618.11 422.17,628.51 431.48,650.69 437.62,667.40 443.75,684.11 450.08,702.00 451.67,707.16 453.27,712.31 454.62,727.42 454.69,740.72 454.77,758.00 456.15,766.25 459.52,769.62 462.12,772.21 465.58,774.34 467.22,774.34 468.86,774.34 468.12,770.30 465.56,765.36 463.01,760.42 461.80,755.50 462.88,754.42 463.95,753.35 466.79,752.46 469.18,752.46 471.56,752.46 476.51,759.68 480.17,768.49 480.17,768.49 486.84,784.52 486.84,784.52 486.84,784.52 492.46,777.57 492.46,777.57 495.55,773.74 499.64,764.85 501.54,757.79 503.44,750.74 504.88,727.66 504.75,706.52 504.58,681.03 503.01,664.52 500.09,657.53 497.67,651.73 494.09,646.01 492.14,644.81 490.20,643.60 481.06,627.61 471.84,609.27 462.61,590.93 445.31,558.88 433.38,538.04 421.46,517.19 407.99,491.18 403.46,480.23 398.93,469.28 393.22,451.88 390.77,441.57 388.33,431.26 385.51,409.47 384.52,393.14 383.46,375.81 380.25,356.96 376.79,347.83 373.54,339.24 367.83,324.68 364.13,315.48 360.42,306.28 356.52,290.47 355.46,280.33 353.97,266.07 352.37,261.91 348.37,261.91 Z M 3356.90,625.00 C 3356.14,625.01 3355.62,625.12 3355.40,625.34 3354.52,626.22 3355.31,629.79 3357.17,633.26 3359.08,636.82 3360.55,656.61 3360.55,678.63 3360.55,700.11 3359.18,721.30 3357.50,725.70 3355.83,730.11 3355.25,733.72 3356.23,733.72 3357.20,733.72 3361.58,730.91 3365.95,727.47 3370.36,724.00 3378.62,721.22 3384.53,721.22 3390.38,721.22 3400.93,724.16 3407.97,727.75 3418.34,733.04 3421.27,733.48 3423.42,730.09 3424.88,727.79 3426.09,724.34 3426.13,722.42 3426.15,720.50 3423.17,715.13 3419.51,710.47 3415.85,705.81 3409.62,691.55 3405.67,678.76 3401.73,665.98 3394.14,650.01 3388.80,643.28 3383.28,636.30 3374.35,629.46 3368.06,627.38 3363.50,625.88 3359.16,624.98 3356.90,625.00 Z M 1926.80,782.05 C 1926.54,782.04 1926.31,782.11 1926.10,782.23 1924.46,783.25 1923.11,800.71 1923.11,821.03 1923.11,847.74 1921.82,860.47 1918.44,866.94 1915.88,871.86 1913.77,879.29 1913.76,883.45 1913.75,887.61 1916.01,893.52 1918.79,896.59 1923.44,901.73 1923.41,902.59 1918.44,907.56 1914.27,911.73 1913.36,916.69 1914.43,929.59 1915.42,941.44 1917.92,948.48 1923.13,954.02 1927.16,958.31 1932.96,961.81 1936.03,961.81 1939.87,961.81 1942.55,958.15 1944.61,950.09 1946.25,943.65 1948.52,933.81 1949.66,928.24 1950.79,922.66 1953.65,917.03 1956.01,915.71 1959.49,913.76 1959.71,909.05 1957.19,890.85 1954.76,873.36 1955.07,864.61 1958.55,851.25 1962.45,836.32 1962.45,833.26 1958.52,827.65 1956.03,824.10 1954.94,821.21 1956.07,821.21 1957.21,821.21 1953.79,816.26 1948.49,810.23 1943.19,804.19 1936.65,795.00 1933.97,789.81 1931.62,785.27 1928.62,782.09 1926.80,782.05 Z -------------------------------------------------------------------------------- /ggseg/data/jhu/Inferior fronto-occipital fasciculus L: -------------------------------------------------------------------------------- 1 | M 297.25,314.37 C 292.32,314.51 278.21,320.61 265.89,327.93 265.89,327.93 243.49,341.24 243.49,341.24 243.49,341.24 270.09,347.71 270.09,347.71 288.09,352.09 300.44,357.18 308.29,363.45 314.73,368.59 322.72,379.26 326.23,387.41 331.19,398.96 332.55,408.91 332.55,433.82 332.55,457.67 333.51,465.21 336.43,464.24 338.56,463.53 343.00,458.34 346.29,452.71 349.79,446.70 352.30,436.48 352.34,427.96 352.38,419.98 350.81,401.79 348.86,387.54 346.60,371.15 342.96,358.35 338.93,352.69 335.42,347.77 332.55,340.81 332.55,337.23 332.55,332.98 327.98,327.85 319.39,322.42 312.15,317.85 302.19,314.23 297.25,314.37 Z M 3217.35,535.31 C 3217.35,535.31 3217.08,544.21 3217.08,544.21 3216.91,549.91 3213.31,556.38 3207.10,562.18 3201.76,567.16 3195.53,571.24 3193.24,571.24 3190.96,571.24 3185.62,569.92 3181.37,568.30 3174.64,565.75 3173.40,566.35 3171.73,572.99 3170.68,577.18 3168.44,580.61 3166.75,580.61 3165.06,580.61 3163.69,574.99 3163.69,568.12 3163.69,561.24 3162.38,555.62 3160.78,555.62 3159.19,555.62 3156.98,563.70 3155.87,573.58 3154.77,583.46 3152.56,599.19 3150.96,608.53 3149.37,617.87 3148.06,647.17 3148.06,673.65 3148.06,673.65 3148.06,721.80 3148.06,721.80 3148.06,721.80 3131.27,740.35 3131.27,740.35 3117.60,755.45 3114.09,761.65 3112.41,773.65 3111.27,781.76 3110.46,790.15 3110.62,792.30 3110.78,794.45 3110.91,800.08 3110.94,804.80 3110.96,809.53 3110.09,821.83 3109.00,832.14 3107.91,842.45 3105.52,853.98 3103.67,857.75 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411.70,378.21 380.46,352.66 380.46,352.66 380.46,352.66 369.17,323.69 369.17,323.69 362.96,307.75 357.17,287.40 356.32,278.47 355.00,264.77 357.15,255.20 369.96,217.54 378.32,192.96 388.76,163.02 393.15,150.99 397.54,138.96 401.17,124.76 401.22,119.44 401.26,114.13 403.76,107.62 406.77,104.99 409.77,102.35 419.81,99.51 429.06,98.67 429.06,98.67 445.89,97.14 445.89,97.14 445.89,97.14 443.93,120.39 443.93,120.39 442.85,133.17 439.71,151.62 436.96,161.37 434.20,171.13 426.26,191.61 419.31,206.90 412.36,222.18 406.02,240.55 405.21,247.73 404.10,257.55 405.68,264.57 411.60,276.18 415.93,284.66 423.46,295.20 428.35,299.60 433.24,304.00 440.75,310.00 445.05,312.92 449.34,315.85 459.89,323.08 468.48,329.01 481.95,338.29 488.20,340.27 513.76,343.34 530.07,345.31 549.21,346.12 556.29,345.15 563.37,344.18 577.34,340.33 587.32,336.60 597.30,332.86 611.49,324.26 618.85,317.47 626.21,310.69 635.10,299.20 638.62,291.95 644.49,279.82 644.76,276.22 641.93,247.68 639.68,224.97 635.81,208.61 627.56,186.92 621.35,170.59 614.00,149.22 611.23,139.42 608.46,129.63 607.06,120.74 608.13,119.68 609.19,118.61 615.47,120.50 622.08,123.88 628.69,127.25 636.36,132.62 639.13,135.81 641.89,139.00 652.75,158.49 663.26,179.11 677.81,207.65 683.13,221.82 685.58,238.47 687.35,250.50 690.40,268.88 692.38,279.32 695.91,298.01 695.78,298.71 683.78,325.95 673.57,349.14 667.56,357.74 646.60,379.15 631.51,394.56 612.90,409.72 599.64,417.39 587.56,424.38 568.97,433.03 558.33,436.62 547.69,440.20 535.08,443.10 530.30,443.06 530.30,443.06 530.30,443.06 530.30,443.06 Z M 3564.77,366.37 C 3555.39,368.40 3554.70,367.87 3549.61,354.53 3545.49,343.74 3544.62,334.29 3545.80,312.95 3546.64,297.77 3548.94,274.80 3550.91,261.91 3552.88,249.02 3556.03,235.42 3557.91,231.70 3560.67,226.22 3560.08,223.16 3554.83,215.80 3551.26,210.79 3546.90,197.72 3545.13,186.76 3543.20,174.75 3536.01,154.50 3527.02,135.74 3514.82,110.31 3512.14,101.62 3512.27,88.07 3512.36,78.96 3513.39,70.55 3514.55,69.39 3515.71,68.22 3521.97,70.80 3528.45,75.11 3534.93,79.43 3548.31,89.77 3558.18,98.10 3571.23,109.11 3576.66,116.06 3578.06,123.56 3579.13,129.23 3581.25,134.64 3582.77,135.58 3584.29,136.52 3585.54,143.93 3585.54,152.04 3585.54,164.51 3586.99,168.05 3594.91,175.01 3600.79,180.16 3604.46,186.55 3604.75,192.10 3605.01,196.99 3604.87,210.12 3604.45,221.29 3604.03,232.46 3602.42,242.93 3600.86,244.57 3599.13,246.39 3598.04,245.28 3598.04,241.69 3598.04,238.47 3595.89,233.47 3593.27,230.58 3589.02,225.87 3589.01,224.89 3593.24,221.38 3597.39,217.94 3597.04,216.72 3590.48,211.56 3586.36,208.32 3581.30,205.67 3579.24,205.67 3576.92,205.67 3576.14,208.35 3577.21,212.70 3578.15,216.56 3580.66,229.22 3582.77,240.82 3585.00,253.06 3588.20,261.91 3590.38,261.91 3592.45,261.91 3595.85,263.96 3597.93,266.46 3600.99,270.15 3600.17,272.55 3593.66,279.07 3586.53,286.19 3585.17,291.26 3581.87,322.91 3579.82,342.59 3577.35,359.94 3576.37,361.46 3575.40,362.99 3570.18,365.19 3564.77,366.37 3564.77,366.37 3564.77,366.37 3564.77,366.37 Z M 3353.54,352.97 C 3345.68,359.11 3341.61,360.48 3337.70,358.28 3333.28,355.81 3332.43,350.08 3332.43,323.06 3332.43,323.06 3332.43,290.79 3332.43,290.79 3332.43,290.79 3322.68,286.75 3322.68,286.75 3312.97,282.73 3312.95,282.66 3315.22,265.28 3316.48,255.69 3317.82,245.04 3318.22,241.60 3318.61,238.16 3317.40,232.71 3315.52,229.47 3313.06,225.23 3313.06,223.25 3315.52,222.35 3317.92,221.47 3318.08,215.74 3316.06,203.23 3314.48,193.40 3313.78,178.70 3314.52,170.57 3315.36,161.39 3319.00,151.26 3324.14,143.84 3328.70,137.28 3332.43,128.11 3332.43,123.48 3332.43,118.07 3334.11,115.05 3337.11,115.05 3339.69,115.05 3341.80,114.00 3341.81,112.71 3341.81,111.42 3347.32,104.04 3354.04,96.31 3362.73,86.31 3367.25,83.20 3369.68,85.55 3372.13,87.92 3369.89,95.09 3361.73,111.00 3351.17,131.58 3350.19,135.90 3347.90,171.74 3346.29,196.90 3346.54,211.66 3348.61,214.15 3350.84,216.84 3349.85,220.43 3345.23,226.30 3340.88,231.83 3338.68,239.15 3338.68,248.07 3338.68,255.46 3340.03,265.05 3341.67,269.39 3343.32,273.73 3350.42,281.08 3357.44,285.72 3368.40,292.98 3369.94,295.34 3368.37,302.49 3367.36,307.07 3368.00,314.65 3369.78,319.35 3372.23,325.78 3371.93,329.94 3368.57,336.29 3366.12,340.92 3359.35,348.43 3353.54,352.97 3353.54,352.97 3353.54,352.97 3353.54,352.97 Z -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- 1 | ![main](https://github.com/ggseg/python-ggseg/actions/workflows/main.yml/badge.svg) 2 | [![Coverage Status](https://coveralls.io/repos/github/ggseg/python-ggseg/badge.svg?branch=main)](https://coveralls.io/github/ggseg/python-ggseg?branch=main) 3 | [![MIT License](https://img.shields.io/badge/License-MIT-brightgreen.svg)](https://github.com/ggseg/python-ggseg/blob/main/LICENSE) 4 | [![pypi version](https://img.shields.io/pypi/v/ggseg.svg)](https://pypi.org/project/ggseg/) 5 | 6 | # python-ggseg 7 | 8 | Python module for ggseg-like visualizations. 9 | 10 | ## Dependencies 11 | 12 | Requires `matplotlib>=3.4` and `numpy>=1.21`. 13 | 14 | ## Install 15 | 16 | ```pip install ggseg``` 17 | 18 | ## Usage 19 | 20 | In order to work with `python-ggseg`, the data should be prepared as a 21 | dictionary where each item is one region of a given atlas assigned with some 22 | numeric value. The current version includes three atlases: the 23 | [Desikan-Killiany (DK) atlas](https://pubmed.ncbi.nlm.nih.gov/16530430/) 24 | , the [Johns Hopkins University (JHU) white-matter atlas](https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlases) and the [FreeSurfer `aseg` atlas](https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferVersion3). 25 | 26 | ### Cortical ROIs (Desikan-Killiany) 27 | 28 | Cortical ROI data such as using the DK atlas may be 29 | structured as follows: 30 | > ``` 31 | > {'bankssts_left': 1.1, 32 | > 'caudalanteriorcingulate_left': 1.0, 33 | > 'caudalmiddlefrontal_left': 2.6, 34 | > 'cuneus_left': 2.6, 35 | > 'entorhinal_left': 0.6, 36 | > ...} 37 | 38 | Then be passed to the `ggseg.plot_dk` function: 39 | 40 | ```python 41 | import ggseg 42 | ggseg.plot_dk(data, cmap='Spectral', figsize=(15,15), 43 | background='k', edgecolor='w', bordercolor='gray', 44 | ylabel='Cortical thickness (mm)', title='Title of the figure') 45 | ``` 46 | 47 | ![DK](https://raw.githubusercontent.com/ggseg/python-ggseg/main/doc/dk01.jpg) 48 | 49 | The comprehensive list of applicable regions can be found in this [folder](https://github.com/ggseg/python-ggseg/tree/main/ggseg/data/dk). 50 | 51 | ### Subcortical regions (FreeSurfer `aseg` atlas) 52 | 53 | ```python 54 | data = {'Left-Lateral-Ventricle': 12289.6, 55 | 'Left-Thalamus': 8158.3, 56 | 'Left-Caudate': 3463.3, 57 | 'Left-Putamen': 4265.3, 58 | 'Left-Pallidum': 1620.9, 59 | '3rd-Ventricle': 1635.6, 60 | '4th-Ventricle': 1115.6, 61 | ...} 62 | ``` 63 | 64 | ```python 65 | ggseg.plot_aseg(data, cmap='Spectral', 66 | background='k', edgecolor='w', bordercolor='gray', 67 | ylabel='Volume (mm3)', title='Title of the figure') 68 | ``` 69 | 70 | ![aseg](https://raw.githubusercontent.com/ggseg/python-ggseg/main/doc/aseg.png) 71 | 72 | The comprehensive list of applicable regions can be found in this [folder](https://github.com/ggseg/python-ggseg/tree/main/ggseg/data/aseg). 73 | 74 | ### White-matter fiber tracts (Johns Hopkins University) 75 | 76 | ```python 77 | data = {'Anterior thalamic radiation L': 0.3004812598228455, 78 | 'Anterior thalamic radiation R': 0.2909256815910339, 79 | 'Corticospinal tract L': 0.3517134189605713, 80 | 'Corticospinal tract R': 0.3606771230697632, 81 | 'Cingulum (cingulate gyrus) L': 0.3149917721748352, 82 | 'Cingulum (cingulate gyrus) R': 0.3126821517944336, 83 | ...} 84 | ``` 85 | 86 | ```python 87 | ggseg.plot_jhu(data, background='k', edgecolor='w', cmap='Spectral', 88 | bordercolor='gray', ylabel='Mean Fractional Anisotropy', 89 | title='Title of the figure') 90 | ``` 91 | 92 | ![JHU](https://raw.githubusercontent.com/ggseg/python-ggseg/main/doc/jhu.png) 93 | 94 | The comprehensive list of applicable regions can be found in this [folder](https://github.com/ggseg/python-ggseg/tree/main/ggseg/data/jhu). 95 | 96 | ## Tests 97 | 98 | The current development version of `python-ggseg` has a coverage rate close to 100%. 99 | The corresponding tests can be found in this [folder](https://github.com/ggseg/python-ggseg/tree/main/ggseg/tests). 100 | 101 | ## Examples 102 | 103 | A Jupyter Notebook with examples can be found [there](https://github.com/ggseg/python-ggseg/blob/main/doc/ggseg.ipynb). 104 | -------------------------------------------------------------------------------- /ggseg/tests/tests.py: -------------------------------------------------------------------------------- 1 | import unittest 2 | 3 | data_dk = {'bankssts_left': 2.48, 4 | 'caudalanteriorcingulate_left': 2.228, 5 | 'caudalmiddlefrontal_left': 2.618, 6 | 'cuneus_left': 2.137, 7 | 'entorhinal_left': 3.332, 8 | 'fusiform_left': 2.605, 9 | 'inferiorparietal_left': 2.436, 10 | 'inferiortemporal_left': 2.782, 11 | 'isthmuscingulate_left': 2.138, 12 | 'lateraloccipital_left': 2.258, 13 | 'lateralorbitofrontal_left': 2.582, 14 | 'lingual_left': 2.333, 15 | 'medialorbitofrontal_left': 2.321, 16 | 'middletemporal_left': 2.949, 17 | 'parahippocampal_left': 2.731, 18 | 'paracentral_left': 2.433, 19 | 'parsopercularis_left': 2.561, 20 | 'parsorbitalis_left': 2.715, 21 | 'parstriangularis_left': 2.463, 22 | 'pericalcarine_left': 1.978, 23 | 'postcentral_left': 2.213, 24 | 'posteriorcingulate_left': 2.206, 25 | 'precentral_left': 2.73, 26 | 'precuneus_left': 2.238, 27 | 'rostralanteriorcingulate_left': 2.632, 28 | 'rostralmiddlefrontal_left': 2.406, 29 | 'superiorfrontal_left': 2.638, 30 | 'superiorparietal_left': 2.244, 31 | 'superiortemporal_left': 2.656, 32 | 'supramarginal_left': 2.507, 33 | 'frontalpole_left': 2.579, 34 | 'temporalpole_left': 3.652, 35 | 'transversetemporal_left': 2.567, 36 | 'insula_left': 2.869, 37 | 'bankssts_right': 2.579, 38 | 'caudalanteriorcingulate_right': 2.501, 39 | 'caudalmiddlefrontal_right': 2.649, 40 | 'cuneus_right': 2.265, 41 | 'entorhinal_right': 2.448, 42 | 'fusiform_right': 2.602, 43 | 'inferiorparietal_right': 2.424, 44 | 'inferiortemporal_right': 2.609, 45 | 'isthmuscingulate_right': 2.127, 46 | 'lateraloccipital_right': 2.381, 47 | 'lateralorbitofrontal_right': 2.533, 48 | 'lingual_right': 2.424, 49 | 'medialorbitofrontal_right': 2.266, 50 | 'middletemporal_right': 2.741, 51 | 'parahippocampal_right': 2.741, 52 | 'paracentral_right': 2.45, 53 | 'parsopercularis_right': 2.521, 54 | 'parsorbitalis_right': 2.505, 55 | 'parstriangularis_right': 2.442, 56 | 'pericalcarine_right': 2.02, 57 | 'postcentral_right': 2.171, 58 | 'posteriorcingulate_right': 2.4, 59 | 'precentral_right': 2.654, 60 | 'precuneus_right': 2.348, 61 | 'rostralanteriorcingulate_right': 2.541, 62 | 'rostralmiddlefrontal_right': 2.362, 63 | 'superiorfrontal_right': 2.642, 64 | 'superiorparietal_right': 2.265, 65 | 'superiortemporal_right': 2.587, 66 | 'supramarginal_right': 2.459, 67 | 'frontalpole_right': 2.551, 68 | 'temporalpole_right': 3.486, 69 | 'transversetemporal_right': 2.714, 70 | 'insula_right': 2.994} 71 | 72 | 73 | data_aseg = {'Left-Lateral-Ventricle': 12289.6, 74 | 'Left-Thalamus': 8158.3, 75 | 'Left-Caudate': 3463.3, 76 | 'Left-Putamen': 4265.3, 77 | 'Left-Pallidum': 1620.9, 78 | '3rd-Ventricle': 1635.6, 79 | '4th-Ventricle': 1115.6, 80 | 'Brain-Stem': 20393.1, 81 | 'Left-Hippocampus': 4307.1, 82 | 'Left-Amygdala': 1512.4, 83 | 'Left-VentralDC': 3871.9, 84 | 'Right-Lateral-Ventricle': 9530.7, 85 | 'Right-Thalamus': 7613.9, 86 | 'Right-Caudate': 3605.0, 87 | 'Right-Putamen': 4316.9, 88 | 'Right-Pallidum': 1696.9, 89 | 'Right-Hippocampus': 4516.9, 90 | 'Right-Amygdala': 1781.7, 91 | 'Right-VentralDC': 4056.8, 92 | 'CC_Posterior': 939.8, 93 | 'CC_Mid_Posterior': 347.4, 94 | 'CC_Central': 399.0, 95 | 'CC_Mid_Anterior': 443.7, 96 | 'CC_Anterior': 804.8} 97 | 98 | data_jhu = {'Anterior thalamic radiation L': 0.3004812598228455, 99 | 'Anterior thalamic radiation R': 0.2909256815910339, 100 | 'Corticospinal tract L': 0.3517134189605713, 101 | 'Corticospinal tract R': 0.3606771230697632, 102 | 'Cingulum (cingulate gyrus) L': 0.3149917721748352, 103 | 'Cingulum (cingulate gyrus) R': 0.3126821517944336, 104 | 'Cingulum (hippocampus) L': 0.2284496426582336, 105 | 'Cingulum (hippocampus) R': 0.2508412301540375, 106 | 'Forceps major': 0.299083411693573, 107 | 'Forceps minor': 0.2521731853485107, 108 | 'Inferior fronto-occipital fasciculus L': 0.2457948923110962, 109 | 'Inferior fronto-occipital fasciculus R': 0.2696700096130371, 110 | 'Inferior longitudinal fasciculus L': 0.2393001765012741, 111 | 'Inferior longitudinal fasciculus R': 0.2447357028722763, 112 | 'Superior longitudinal fasciculus L': 0.2248284667730331, 113 | 'Superior longitudinal fasciculus R': 0.2204412966966629, 114 | 'Uncinate fasciculus L': 0.2281110733747482, 115 | 'Uncinate fasciculus R': 0.2106734961271286, 116 | 'Superior longitudinal fasciculus (temporal part) L': 0.2622972726821899, 117 | 'Superior longitudinal fasciculus (temporal part) R': 0.3504709601402283} 118 | 119 | 120 | class RunThemAll(unittest.TestCase): 121 | 122 | def test_001(self): 123 | import ggseg 124 | ggseg.plot_dk(data_dk, background='w', edgecolor='k', cmap='hot') 125 | ggseg.plot_dk(data_dk, background='w', edgecolor='k', cmap='hot', 126 | vminmax=[2.5, 3.5]) 127 | ggseg.plot_aseg(data_aseg, background='k', edgecolor='w', 128 | bordercolor='gray', cmap='Spectral', ylabel='volume') 129 | ggseg.plot_jhu(data_jhu, background='k', edgecolor='w', 130 | bordercolor='gray', cmap='Spectral', ylabel='volume') 131 | -------------------------------------------------------------------------------- /ggseg/data/jhu/CSF: -------------------------------------------------------------------------------- 1 | M 1976.94,1217.42 C 1964.57,1218.32 1963.73,1217.87 1963.73,1210.30 1963.73,1205.85 1961.62,1201.40 1959.05,1200.41 1955.64,1199.10 1954.36,1193.75 1954.36,1180.81 1954.36,1164.78 1955.38,1162.02 1964.66,1153.02 1970.33,1147.53 1978.14,1143.04 1982.01,1143.04 1987.09,1143.04 1990.31,1146.05 1993.58,1153.87 1996.07,1159.83 1998.09,1172.84 1998.06,1182.77 1998.04,1192.71 1996.24,1204.36 1994.08,1208.65 1990.97,1214.82 1987.38,1216.66 1976.94,1217.42 1976.94,1217.42 1976.94,1217.42 1976.94,1217.42 Z M 751.85,1033.68 C 747.07,1033.68 741.47,1031.99 739.41,1029.93 737.35,1027.86 735.66,1020.16 735.66,1012.80 735.66,1000.84 733.68,997.25 716.91,978.74 706.60,967.37 698.16,956.85 698.16,955.37 698.16,953.90 692.43,950.97 685.42,948.87 677.32,946.45 668.76,940.47 661.92,932.49 656.01,925.58 647.61,912.16 643.27,902.68 638.93,893.19 632.98,882.73 630.05,879.43 627.12,876.14 619.10,870.86 612.23,867.70 605.35,864.54 592.91,861.93 584.59,861.89 576.22,861.86 565.52,859.51 560.68,856.65 552.83,852.01 545.63,851.79 491.45,854.54 491.45,854.54 430.98,857.60 430.98,857.60 430.98,857.60 413.13,868.31 413.13,868.31 413.13,868.31 395.28,879.01 395.28,879.01 395.28,879.01 395.17,899.93 395.17,899.93 395.07,917.06 393.78,922.29 388.02,928.86 384.15,933.27 371.91,942.84 360.82,950.12 345.73,960.04 337.84,968.02 329.49,981.83 323.35,991.98 315.97,1001.77 313.10,1003.58 309.58,1005.81 305.03,1005.88 299.12,1003.80 292.86,1001.60 289.17,997.19 286.17,988.30 283.33,979.87 282.58,968.36 283.84,952.55 285.15,936.28 288.42,923.54 294.67,910.37 299.60,900.00 308.01,885.58 313.35,878.34 318.69,871.10 327.48,862.88 332.89,860.09 338.30,857.29 346.33,855.69 350.74,856.53 355.17,857.38 362.03,855.91 366.10,853.24 372.16,849.27 375.57,849.05 385.40,852.00 391.96,853.97 400.22,855.58 403.75,855.58 407.57,855.58 416.29,848.74 425.27,838.72 438.39,824.07 443.22,821.01 462.23,815.37 474.26,811.80 487.14,806.74 490.85,804.13 495.91,800.57 498.53,793.70 501.33,776.70 503.39,764.23 507.76,745.90 511.06,735.97 515.61,722.24 516.24,716.42 513.69,711.65 511.25,707.09 511.41,702.44 514.28,694.48 517.50,685.59 517.46,681.71 514.06,673.49 511.77,667.95 507.80,655.48 505.24,645.79 501.82,632.81 498.63,627.27 493.14,624.77 489.04,622.90 480.76,613.67 474.74,604.27 468.72,594.86 461.69,579.06 459.11,569.17 456.53,559.28 454.39,544.09 454.36,535.43 454.32,526.77 451.05,510.51 447.09,499.30 443.14,488.09 434.38,470.65 427.63,460.54 420.88,450.44 412.87,438.52 409.83,434.06 406.79,429.60 404.68,422.43 405.15,418.14 405.76,412.39 408.07,410.08 413.88,409.40 418.97,408.81 428.94,413.13 442.00,421.59 453.13,428.79 473.41,440.10 487.07,446.72 500.73,453.34 514.48,458.76 517.64,458.76 520.80,458.76 539.86,451.67 559.99,443.02 580.13,434.36 601.65,423.78 607.81,419.51 613.98,415.24 623.81,410.37 629.67,408.69 635.52,407.01 642.82,405.64 645.90,405.64 648.97,405.64 652.29,407.73 653.27,410.29 654.32,413.02 648.56,423.66 639.33,436.07 630.68,447.69 617.06,463.52 609.07,471.25 601.08,478.99 592.35,489.49 589.67,494.59 586.21,501.18 584.52,515.18 583.83,543.02 583.28,564.94 581.07,586.99 578.79,593.11 576.56,599.13 568.21,616.00 560.23,630.61 552.26,645.21 543.90,664.57 541.66,673.63 538.65,685.79 538.41,694.12 540.75,705.54 543.32,718.11 543.09,721.30 539.48,722.69 536.25,723.92 535.46,728.00 536.57,737.65 537.42,744.94 539.85,761.45 541.98,774.34 544.11,787.23 547.43,799.76 549.36,802.19 551.28,804.63 560.59,811.54 570.04,817.55 579.49,823.56 587.93,829.38 588.79,830.48 589.65,831.57 595.63,835.68 602.07,839.59 608.52,843.51 613.79,848.61 613.79,850.93 613.79,853.25 616.71,856.08 620.28,857.21 623.84,858.34 627.58,858.45 628.58,857.45 629.58,856.45 632.44,857.32 634.94,859.40 637.64,861.63 654.87,863.86 677.41,864.87 698.28,865.81 718.35,868.28 722.01,870.36 725.68,872.45 735.28,881.50 743.36,890.48 751.43,899.46 760.55,911.80 763.61,917.90 766.68,924.01 770.14,934.26 771.31,940.68 772.47,947.11 771.25,967.48 768.59,985.99 765.93,1004.48 763.03,1022.78 762.14,1026.65 760.95,1031.87 758.30,1033.68 751.85,1033.68 751.85,1033.68 751.85,1033.68 751.85,1033.68 Z M 1974.45,946.19 C 1974.45,946.19 1963.73,946.19 1963.73,946.19 1963.73,946.19 1963.73,927.63 1963.73,927.63 1963.73,917.35 1962.18,908.10 1960.25,906.91 1958.13,905.60 1957.33,898.94 1958.20,889.84 1958.99,881.64 1958.34,872.62 1956.76,869.79 1954.60,865.94 1955.89,863.08 1961.93,858.33 1966.36,854.85 1969.98,849.40 1969.98,846.22 1969.98,843.03 1966.48,836.27 1962.19,831.18 1954.43,821.95 1954.43,821.92 1961.06,820.18 1966.66,818.72 1967.40,816.89 1965.74,808.57 1964.28,801.27 1965.47,796.29 1970.34,789.46 1973.95,784.38 1976.41,779.76 1975.79,779.19 1975.18,778.62 1963.76,775.92 1950.42,773.18 1937.08,770.45 1922.05,766.08 1917.02,763.49 1911.99,760.89 1907.01,757.34 1905.94,755.61 1904.87,753.88 1897.40,752.40 1889.33,752.33 1881.27,752.25 1869.05,750.16 1862.17,747.69 1855.30,745.21 1847.51,743.16 1844.87,743.14 1842.23,743.11 1834.84,735.34 1828.46,725.87 1820.05,713.38 1816.86,705.33 1816.86,696.57 1816.86,696.57 1816.86,684.50 1816.86,684.50 1816.86,684.50 1836.39,688.69 1836.39,688.69 1847.14,690.99 1862.43,692.93 1870.39,692.99 1879.31,693.06 1886.33,694.89 1888.74,697.79 1890.88,700.36 1894.48,702.47 1896.75,702.47 1899.02,702.47 1902.72,705.00 1904.96,708.10 1907.21,711.19 1913.97,715.67 1919.98,718.06 1926.00,720.45 1936.55,725.86 1943.42,730.09 1950.30,734.32 1956.39,738.97 1956.96,740.43 1957.54,741.90 1960.60,743.09 1963.78,743.09 1966.96,743.09 1970.45,745.90 1971.55,749.34 1972.64,752.78 1974.84,755.59 1976.44,755.59 1978.05,755.59 1979.36,754.18 1979.36,752.47 1979.36,750.75 1982.82,749.34 1987.06,749.34 1991.30,749.34 1999.57,745.12 2005.44,739.97 2011.38,734.76 2019.68,730.59 2024.14,730.59 2028.56,730.59 2033.29,728.68 2034.67,726.35 2036.04,724.01 2042.27,720.45 2048.51,718.42 2054.75,716.39 2062.35,711.98 2065.40,708.60 2068.45,705.23 2073.54,702.47 2076.71,702.47 2079.88,702.47 2082.48,701.08 2082.48,699.38 2082.48,697.68 2091.71,692.10 2102.99,686.98 2114.28,681.87 2128.55,676.74 2134.71,675.58 2134.71,675.58 2145.92,673.48 2145.92,673.48 2145.92,673.48 2144.09,687.08 2144.09,687.08 2143.09,694.57 2140.06,702.30 2137.37,704.27 2134.68,706.24 2132.48,710.30 2132.48,713.30 2132.48,716.30 2128.95,722.94 2124.64,728.06 2120.33,733.18 2117.51,738.50 2118.36,739.88 2119.21,741.26 2118.06,743.92 2115.79,745.80 2112.98,748.13 2108.37,748.26 2101.26,746.22 2091.87,743.53 2089.06,744.45 2072.95,755.45 2063.10,762.16 2049.27,769.22 2042.20,771.12 2034.42,773.21 2029.36,776.42 2029.36,779.25 2029.36,783.12 2028.15,783.29 2022.41,780.21 2018.59,778.17 2010.12,776.20 2003.59,775.83 1997.06,775.46 1990.99,776.33 1990.11,777.76 1989.22,779.20 1993.00,790.61 1998.51,803.13 2007.07,822.60 2008.58,829.82 2008.91,853.01 2009.15,869.40 2008.13,879.41 2006.34,878.31 2004.53,877.18 2004.30,880.60 2005.76,887.12 2007.07,892.97 2008.82,900.71 2009.65,904.33 2010.63,908.57 2008.30,913.99 2003.07,919.63 1998.62,924.43 1994.98,930.16 1994.98,932.36 1994.98,934.56 1992.77,938.58 1990.07,941.28 1987.37,943.98 1980.34,946.19 1974.45,946.19 1974.45,946.19 1974.45,946.19 1974.45,946.19 Z -------------------------------------------------------------------------------- /ggseg/data/aseg/Sagittal: -------------------------------------------------------------------------------- 1 | M 2502.73,868.03 C 2488.12,862.87 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2044.22,67.43 2049.41,68.17 2058.87,62.82 2076.35,49.27 2101.98,29.39 2122.75,18.13 2133.99,18.01 2137.56,17.97 2156.31,25.74 2175.65,35.26 2194.99,44.79 2217.78,53.90 2226.28,55.51 2250.99,60.20 2261.26,68.18 2266.62,86.84 2269.93,98.39 2262.41,138.02 2255.46,145.67 2252.34,149.09 2252.83,152.04 2257.90,160.65 2263.70,170.47 2264.68,170.96 2269.56,166.55 2272.49,163.90 2277.94,161.73 2281.67,161.73 2291.37,161.73 2300.28,151.49 2302.61,137.68 2306.04,117.26 2310.14,106.96 2320.34,93.09 2320.34,93.09 2330.20,79.67 2330.20,79.67 2330.20,79.67 2372.61,81.79 2372.61,81.79 2422.86,84.30 2429.16,85.98 2462.24,105.80 2493.05,124.25 2547.60,147.92 2570.26,152.67 2580.73,154.87 2592.72,160.51 2602.54,167.87 2611.13,174.31 2631.53,186.76 2647.86,195.53 2664.19,204.30 2686.40,219.25 2697.21,228.74 2708.03,238.24 2721.95,249.87 2728.15,254.60 2750.32,271.52 2788.35,318.19 2799.97,342.76 2806.14,355.79 2816.52,372.09 2823.03,378.96 2835.83,392.48 2857.78,442.92 2861.85,468.20 2863.09,475.85 2867.64,490.14 2871.98,499.96 2881.42,521.33 2879.95,531.48 2866.40,538.49 2858.22,542.72 2853.74,542.89 2834.41,539.68 2814.08,536.30 2809.67,536.59 2788.29,542.63 2775.29,546.31 2763.09,549.31 2761.19,549.31 2759.28,549.31 2753.39,544.99 2748.10,539.70 2748.10,539.70 2748.10,539.70 2748.10,539.70 Z -------------------------------------------------------------------------------- /ggseg/__init__.py: -------------------------------------------------------------------------------- 1 | __version__ = '0.1' 2 | 3 | 4 | def _svg_parse_(path): 5 | import re 6 | import numpy as np 7 | 8 | from matplotlib.path import Path 9 | 10 | commands = {'M': Path.MOVETO, 11 | 'L': Path.LINETO, 12 | 'Q': Path.CURVE3, 13 | 'C': Path.CURVE4, 14 | 'Z': Path.CLOSEPOLY} 15 | vertices = [] 16 | codes = [] 17 | cmd_values = re.split("([A-Za-z])", path)[1:] # Split over commands. 18 | for cmd, values in zip(cmd_values[::2], cmd_values[1::2]): 19 | # Numbers are separated either by commas, or by +/- signs (but not at 20 | # the beginning of the string). 21 | if cmd.upper() in ['M', 'L', 'Q', 'C']: 22 | points = [e.split(',') for e in values.split(' ') if e != ''] 23 | points = [list(map(float, each)) for each in points] 24 | else: 25 | points = [(0., 0.)] 26 | points = np.reshape(points, (-1, 2)) 27 | # if cmd.islower(): 28 | # points += vertices[-1][-1] 29 | for i in range(0, len(points)): 30 | codes.append(commands[cmd.upper()]) 31 | vertices.append(points) 32 | return np.array(codes), np.concatenate(vertices) 33 | 34 | 35 | def _add_colorbar_(ax, cmap, norm, ec, labelsize, ylabel): 36 | import matplotlib 37 | from mpl_toolkits.axes_grid1 import make_axes_locatable 38 | divider = make_axes_locatable(ax) 39 | cax = divider.append_axes('right', size='1%', pad=1) 40 | 41 | cb1 = matplotlib.colorbar.ColorbarBase(cax, cmap=cmap, 42 | norm=norm, 43 | orientation='vertical', 44 | ticklocation='left') 45 | cb1.ax.tick_params(labelcolor=ec, labelsize=labelsize) 46 | cb1.ax.set_ylabel(ylabel, color=ec, fontsize=labelsize) 47 | 48 | 49 | def _render_data_(data, wd, cmap, norm, ax, edgecolor): 50 | import os.path as op 51 | import matplotlib.patches as patches 52 | from matplotlib.path import Path 53 | for k, v in data.items(): 54 | fp = op.join(wd, k) 55 | if op.isfile(fp): 56 | p = open(fp).read() 57 | codes, verts = _svg_parse_(p) 58 | path = Path(verts, codes) 59 | c = cmap(norm(v)) 60 | ax.add_patch(patches.PathPatch(path, facecolor=c, 61 | edgecolor=edgecolor, lw=1)) 62 | else: 63 | # print('%s not found' % fp) 64 | pass 65 | 66 | 67 | def _create_figure_(files, figsize, background, title, fontsize, edgecolor): 68 | import numpy as np 69 | import matplotlib.pyplot as plt 70 | 71 | codes, verts = _svg_parse_(' '.join(files)) 72 | 73 | xmin, ymin = verts.min(axis=0) - 1 74 | xmax, ymax = verts.max(axis=0) + 1 75 | yoff = 0 76 | ymin += yoff 77 | verts = np.array([(x, y + yoff) for x, y in verts]) 78 | 79 | fig = plt.figure(figsize=figsize, facecolor=background) 80 | ax = fig.add_axes([0, 0, 1, 1], frameon=False, aspect=1, 81 | xlim=(xmin, xmax), # centering 82 | ylim=(ymax, ymin), # centering, upside down 83 | xticks=[], yticks=[]) # no ticks 84 | ax.set_title(title, fontsize=fontsize, y=1.03, x=0.55, color=edgecolor) 85 | return ax 86 | 87 | 88 | def _render_regions_(files, ax, facecolor, edgecolor): 89 | from matplotlib.path import Path 90 | import matplotlib.patches as patches 91 | 92 | codes, verts = _svg_parse_(' '.join(files)) 93 | path = Path(verts, codes) 94 | 95 | ax.add_patch(patches.PathPatch(path, facecolor=facecolor, 96 | edgecolor=edgecolor, lw=1)) 97 | 98 | 99 | def _get_cmap_(cmap, values, vminmax=[]): 100 | import matplotlib 101 | 102 | cmap = matplotlib.cm.get_cmap(cmap) 103 | if vminmax == []: 104 | vmin, vmax = min(values), max(values) 105 | else: 106 | vmin, vmax = vminmax 107 | norm = matplotlib.colors.Normalize(vmin=vmin, vmax=vmax) 108 | return cmap, norm 109 | 110 | 111 | def plot_dk(data, cmap='Spectral', background='k', edgecolor='w', ylabel='', 112 | figsize=(15, 15), bordercolor='w', vminmax=[], title='', 113 | fontsize=15): 114 | """Plot cortical ROI data based on a Desikan-Killiany (DK) parcellation. 115 | 116 | Parameters 117 | ---------- 118 | data : dict 119 | Data to be plotted. Should be passed as a dictionary where each key 120 | refers to a region from the cortical Desikan-Killiany atlas. The 121 | full list of applicable regions can be found in the folder 122 | ggseg/data/dk. 123 | cmap : matplotlib colormap, optional 124 | The colormap for specified image. 125 | Default='Spectral'. 126 | vminmax : list, optional 127 | Lower and upper bound for the colormap, passed to matplotlib.colors.Normalize 128 | background : matplotlib color, if not provided, defaults to black 129 | edgecolor : matplotlib color, if not provided, defaults to white 130 | bordercolor : matplotlib color, if not provided, defaults to white 131 | ylabel : str, optional 132 | Label to display next to the colorbar 133 | figsize : list, optional 134 | Dimensions of the final figure, passed to matplotlib.pyplot.figure 135 | title : str, optional 136 | Title displayed above the figure, passed to matplotlib.axes.Axes.set_title 137 | fontsize: int, optional 138 | Relative font size for all elements (ticks, labels, title) 139 | """ 140 | import matplotlib.pyplot as plt 141 | import os.path as op 142 | from glob import glob 143 | import ggseg 144 | 145 | wd = op.join(op.dirname(ggseg.__file__), 'data', 'dk') 146 | 147 | # A figure is created by the joint dimensions of the whole-brain outlines 148 | whole_reg = ['lateral_left', 'medial_left', 'lateral_right', 149 | 'medial_right'] 150 | files = [open(op.join(wd, e)).read() for e in whole_reg] 151 | ax = _create_figure_(files, figsize, background, title, fontsize, edgecolor) 152 | 153 | # Each region is outlined 154 | reg = glob(op.join(wd, '*')) 155 | files = [open(e).read() for e in reg] 156 | _render_regions_(files, ax, bordercolor, edgecolor) 157 | 158 | # For every region with a provided value, we draw a patch with the color 159 | # matching the normalized scale 160 | cmap, norm = _get_cmap_(cmap, data.values(), vminmax=vminmax) 161 | _render_data_(data, wd, cmap, norm, ax, edgecolor) 162 | 163 | # DKT regions with no provided values are rendered in gray 164 | data_regions = list(data.keys()) 165 | dkt_regions = [op.splitext(op.basename(e))[0] for e in reg] 166 | NA = set(dkt_regions).difference(data_regions).difference(whole_reg) 167 | files = [open(op.join(wd, e)).read() for e in NA] 168 | _render_regions_(files, ax, 'gray', edgecolor) 169 | 170 | # A colorbar is added 171 | _add_colorbar_(ax, cmap, norm, edgecolor, fontsize*0.75, ylabel) 172 | 173 | plt.show() 174 | 175 | 176 | def plot_jhu(data, cmap='Spectral', background='k', edgecolor='w', ylabel='', 177 | figsize=(17, 5), bordercolor='w', vminmax=[], title='', 178 | fontsize=15): 179 | """Plot WM ROI data based on the Johns Hopkins University (JHU) white 180 | matter atlas. 181 | 182 | Parameters 183 | ---------- 184 | data : dict 185 | Data to be plotted. Should be passed as a dictionary where each key 186 | refers to a region from the Johns Hopkins University white Matter 187 | atlas. The full list of applicable regions can be found in the 188 | folder ggseg/data/jhu. 189 | cmap : matplotlib colormap, optional 190 | The colormap for specified image. 191 | Default='Spectral'. 192 | vminmax : list, optional 193 | Lower and upper bound for the colormap, passed to matplotlib.colors.Normalize 194 | background : matplotlib color, if not provided, defaults to black 195 | edgecolor : matplotlib color, if not provided, defaults to white 196 | bordercolor : matplotlib color, if not provided, defaults to white 197 | ylabel : str, optional 198 | Label to display next to the colorbar 199 | figsize : list, optional 200 | Dimensions of the final figure, passed to matplotlib.pyplot.figure 201 | title : str, optional 202 | Title displayed above the figure, passed to matplotlib.axes.Axes.set_title 203 | fontsize: int, optional 204 | Relative font size for all elements (ticks, labels, title) 205 | """ 206 | 207 | import matplotlib.pyplot as plt 208 | import ggseg 209 | import os.path as op 210 | from glob import glob 211 | 212 | wd = op.join(op.dirname(ggseg.__file__), 'data', 'jhu') 213 | 214 | # A figure is created by the joint dimensions of the whole-brain outlines 215 | whole_reg = ['NA'] 216 | files = [open(op.join(wd, e)).read() for e in whole_reg] 217 | ax = _create_figure_(files, figsize, background, title, fontsize, edgecolor) 218 | 219 | # Each region is outlined 220 | reg = glob(op.join(wd, '*')) 221 | files = [open(e).read() for e in reg] 222 | _render_regions_(files, ax, bordercolor, edgecolor) 223 | 224 | # For every region with a provided value, we draw a patch with the color 225 | # matching the normalized scale 226 | cmap, norm = _get_cmap_(cmap, data.values(), vminmax=vminmax) 227 | _render_data_(data, wd, cmap, norm, ax, edgecolor) 228 | 229 | # JHU regions with no provided values are rendered in gray 230 | NA = ['CSF'] 231 | files = [open(op.join(wd, e)).read() for e in NA] 232 | _render_regions_(files, ax, 'gray', edgecolor) 233 | 234 | # A colorbar is added 235 | _add_colorbar_(ax, cmap, norm, edgecolor, fontsize*0.75, ylabel) 236 | 237 | plt.show() 238 | 239 | 240 | def plot_aseg(data, cmap='Spectral', background='k', edgecolor='w', ylabel='', 241 | figsize=(15, 5), bordercolor='w', vminmax=[], 242 | title='', fontsize=15): 243 | """Plot subcortical ROI data based on the FreeSurfer `aseg` atlas 244 | 245 | Parameters 246 | ---------- 247 | data : dict 248 | Data to be plotted. Should be passed as a dictionary where each key 249 | refers to a region from the FreeSurfer `aseg` atlas. The full list 250 | of applicable regions can be found in the folder ggseg/data/aseg. 251 | cmap : matplotlib colormap, optional 252 | The colormap for specified image. 253 | Default='Spectral'. 254 | vminmax : list, optional 255 | Lower and upper bound for the colormap, passed to matplotlib.colors.Normalize 256 | background : matplotlib color, if not provided, defaults to black 257 | edgecolor : matplotlib color, if not provided, defaults to white 258 | bordercolor : matplotlib color, if not provided, defaults to white 259 | ylabel : str, optional 260 | Label to display next to the colorbar 261 | figsize : list, optional 262 | Dimensions of the final figure, passed to matplotlib.pyplot.figure 263 | title : str, optional 264 | Title displayed above the figure, passed to matplotlib.axes.Axes.set_title 265 | fontsize: int, optional 266 | Relative font size for all elements (ticks, labels, title) 267 | """ 268 | import matplotlib.pyplot as plt 269 | import os.path as op 270 | from glob import glob 271 | import ggseg 272 | 273 | wd = op.join(op.dirname(ggseg.__file__), 'data', 'aseg') 274 | reg = [op.basename(e) for e in glob(op.join(wd, '*'))] 275 | 276 | # Select data from known regions (prevents colorbar from going wild) 277 | known_values = [] 278 | for k, v in data.items(): 279 | if k in reg: 280 | known_values.append(v) 281 | 282 | whole_reg = ['Coronal', 'Sagittal'] 283 | files = [open(op.join(wd, e)).read() for e in whole_reg] 284 | 285 | # A figure is created by the joint dimensions of the whole-brain outlines 286 | ax = _create_figure_(files, figsize, background, title, fontsize, edgecolor) 287 | 288 | # Each region is outlined 289 | reg = glob(op.join(wd, '*')) 290 | files = [open(e).read() for e in reg] 291 | _render_regions_(files, ax, bordercolor, edgecolor) 292 | 293 | # For every region with a provided value, we draw a patch with the color 294 | # matching the normalized scale 295 | cmap, norm = _get_cmap_(cmap, known_values, vminmax=vminmax) 296 | _render_data_(data, wd, cmap, norm, ax, edgecolor) 297 | 298 | # The following regions are ignored/displayed in gray 299 | NA = ['Cerebellum-Cortex', 'Cerebellum-White-Matter', 'Brain-Stem'] 300 | files = [open(op.join(wd, e)).read() for e in NA] 301 | _render_regions_(files, ax, '#111111', edgecolor) 302 | 303 | # A colorbar is added 304 | _add_colorbar_(ax, cmap, norm, edgecolor, fontsize*0.75, ylabel) 305 | 306 | plt.show() 307 | -------------------------------------------------------------------------------- /ggseg/data/aseg/Coronal: -------------------------------------------------------------------------------- 1 | M 294.31,1225.02 C 288.91,1223.73 279.24,1219.43 272.83,1215.47 257.60,1206.06 240.37,1203.11 222.05,1206.79 197.42,1211.73 190.77,1210.34 166.40,1195.15 138.20,1177.57 126.03,1163.67 116.41,1138.09 116.41,1138.09 109.12,1118.68 109.12,1118.68 109.12,1118.68 123.02,1109.11 123.02,1109.11 130.67,1103.85 136.93,1097.81 136.93,1095.68 136.93,1093.56 129.18,1084.17 119.71,1074.81 104.10,1059.39 103.08,1057.59 108.81,1055.47 120.97,1050.97 134.27,1056.69 151.31,1073.74 174.07,1096.50 178.35,1103.87 178.76,1121.05 178.76,1121.05 179.12,1135.79 179.12,1135.79 179.12,1135.79 203.45,1136.71 203.45,1136.71 224.30,1137.49 229.14,1136.65 237.31,1130.84 245.59,1124.94 249.15,1124.36 264.54,1126.38 296.61,1130.60 294.64,1131.41 295.68,1113.55 296.47,1100.05 295.33,1096.02 288.37,1087.76 283.84,1082.37 279.04,1077.97 277.70,1077.97 276.36,1077.97 271.59,1083.53 267.09,1090.32 259.34,1102.03 258.41,1102.51 249.43,1099.38 249.43,1099.38 239.95,1096.07 239.95,1096.07 239.95,1096.07 247.79,1083.11 247.79,1083.11 252.10,1075.98 258.72,1063.51 262.49,1055.39 268.61,1042.24 270.23,1040.83 277.36,1042.48 294.68,1046.46 311.58,1059.21 320.38,1074.90 330.56,1093.08 337.30,1096.33 348.32,1088.38 370.32,1072.53 373.84,1071.68 389.60,1078.42 397.59,1081.84 407.31,1087.61 411.19,1091.25 411.19,1091.25 418.25,1097.86 418.25,1097.86 418.25,1097.86 427.47,1091.04 427.47,1091.04 432.55,1087.29 437.98,1084.22 439.54,1084.22 441.10,1084.22 443.15,1079.49 444.09,1073.71 445.33,1066.05 450.74,1058.63 464.03,1046.36 474.06,1037.09 487.32,1024.24 493.50,1017.80 499.69,1011.35 505.66,1006.07 506.79,1006.07 510.42,1006.07 508.95,1026.82 504.41,1039.70 497.63,1058.91 486.67,1073.75 472.76,1082.56 459.99,1090.64 449.45,1104.60 449.45,1113.43 449.45,1122.54 436.57,1127.98 414.97,1127.98 403.25,1127.98 392.05,1129.69 388.96,1131.95 385.34,1134.60 382.37,1143.70 380.07,1159.16 376.94,1180.28 375.36,1183.75 362.65,1197.34 348.79,1212.16 320.68,1228.29 309.79,1227.68 306.67,1227.50 299.71,1226.31 294.31,1225.02 294.31,1225.02 294.31,1225.02 294.31,1225.02 Z M 1058.87,1210.23 C 1052.85,1209.58 1032.01,1205.35 1012.55,1200.83 1012.55,1200.83 977.16,1192.63 977.16,1192.63 977.16,1192.63 979.20,1176.71 979.20,1176.71 981.11,1161.77 985.54,1141.63 988.76,1133.25 989.81,1130.53 981.23,1129.54 956.55,1129.54 898.88,1129.54 895.73,1128.44 865.82,1097.66 836.74,1067.73 833.85,1063.46 833.85,1050.30 833.85,1028.62 836.26,1029.41 869.98,1062.22 905.73,1097.01 913.19,1100.01 929.71,1086.22 934.57,1082.16 942.77,1076.73 947.92,1074.14 958.34,1068.90 998.41,1062.34 1019.93,1062.34 1031.78,1062.34 1033.87,1061.40 1033.87,1056.09 1033.87,1049.50 1042.64,1047.43 1048.09,1052.72 1049.72,1054.31 1055.27,1056.06 1060.41,1056.63 1069.03,1057.57 1069.93,1058.85 1071.94,1073.01 1073.49,1083.91 1072.82,1090.90 1069.62,1097.08 1063.87,1108.21 1063.93,1112.35 1069.86,1112.35 1072.46,1112.35 1081.95,1117.17 1090.95,1123.07 1106.55,1133.30 1112.01,1135.43 1120.43,1134.60 1122.50,1134.40 1130.11,1122.83 1137.36,1108.89 1137.36,1108.89 1150.54,1083.55 1150.54,1083.55 1150.54,1083.55 1155.12,1092.48 1155.12,1092.48 1161.35,1104.62 1160.63,1104.30 1171.40,1099.84 1184.01,1094.61 1187.92,1087.04 1183.72,1076.00 1179.17,1064.01 1187.89,1053.01 1207.64,1045.84 1216.06,1042.78 1227.25,1035.75 1232.51,1030.21 1237.78,1024.67 1248.32,1017.17 1255.94,1013.55 1255.94,1013.55 1269.79,1006.96 1269.79,1006.96 1269.79,1006.96 1254.18,997.33 1254.18,997.33 1245.30,991.86 1236.04,982.98 1232.70,976.74 1222.96,958.55 1215.39,953.42 1196.70,952.35 1174.26,951.05 1170.76,945.71 1180.11,926.99 1183.91,919.37 1187.00,907.33 1187.00,900.13 1187.00,892.95 1189.35,883.49 1192.23,879.11 1196.68,872.31 1196.79,870.72 1193.01,868.32 1186.65,864.30 1173.28,864.77 1168.88,869.17 1166.82,871.23 1165.13,876.70 1165.13,881.32 1165.13,891.93 1155.16,904.86 1149.61,901.43 1142.67,897.14 1147.84,867.30 1158.94,847.63 1158.94,847.63 1168.80,830.15 1168.80,830.15 1168.80,830.15 1163.30,817.94 1163.30,817.94 1157.90,805.96 1157.96,805.08 1166.50,770.03 1171.29,750.39 1176.81,733.06 1178.76,731.53 1180.72,729.99 1190.54,727.81 1200.60,726.68 1218.43,724.68 1246.38,710.09 1246.38,702.78 1246.38,701.17 1242.29,695.27 1237.29,689.67 1228.92,680.30 1226.74,679.51 1209.94,679.74 1189.16,680.03 1170.85,685.20 1157.55,694.54 1157.55,694.54 1148.41,700.96 1148.41,700.96 1148.41,700.96 1134.81,685.51 1134.81,685.51 1127.33,677.01 1119.72,664.56 1117.91,657.84 1112.11,636.34 1097.51,618.79 1085.26,618.59 1081.73,618.53 1070.18,621.41 1059.61,624.98 1034.83,633.35 1032.22,639.81 1047.25,655.54 1061.94,670.91 1073.25,689.76 1077.71,706.33 1079.74,713.87 1084.06,725.26 1087.32,731.65 1094.83,746.37 1094.83,756.29 1087.30,765.86 1078.25,777.37 1073.78,798.24 1073.34,831.03 1073.34,831.03 1072.93,860.73 1072.93,860.73 1072.93,860.73 1085.90,879.48 1085.90,879.48 1093.04,889.80 1101.77,901.27 1105.30,904.99 1110.77,910.75 1111.01,912.01 1106.92,913.58 1087.68,920.97 1067.56,909.55 1042.88,877.25 1019.73,846.95 1019.93,848.40 1030.42,784.15 1034.21,760.94 1036.59,738.43 1035.72,734.14 1034.84,729.84 1030.52,710.85 1026.12,691.94 1016.28,649.61 1014.96,611.66 1023.03,602.75 1026.02,599.44 1036.36,593.75 1046.01,590.11 1078.44,577.86 1113.97,586.05 1141.69,612.16 1153.55,623.34 1156.02,624.21 1190.13,629.34 1213.45,632.84 1231.86,637.57 1242.57,642.80 1242.57,642.80 1259.06,650.85 1259.06,650.85 1259.06,650.85 1268.26,640.14 1268.26,640.14 1284.78,620.90 1290.14,606.31 1290.08,580.77 1290.00,543.34 1279.93,510.58 1262.37,490.63 1258.73,486.50 1255.76,480.09 1255.76,476.38 1255.76,463.93 1248.88,458.32 1236.47,460.65 1225.43,462.72 1225.33,462.88 1227.91,474.19 1229.34,480.49 1234.09,494.70 1238.45,505.77 1247.61,529.02 1248.82,541.08 1241.70,538.35 1239.12,537.36 1236.99,532.83 1236.96,528.29 1236.87,513.42 1233.21,511.10 1213.10,513.17 1203.04,514.20 1191.75,515.95 1188.01,517.06 1182.38,518.72 1180.12,516.98 1175.03,507.05 1166.79,490.99 1157.61,482.98 1137.00,473.91 1111.59,462.71 1110.44,460.41 1118.38,436.71 1126.42,412.75 1131.57,406.36 1141.36,408.23 1151.76,410.22 1153.66,399.41 1148.07,370.16 1142.49,341.01 1141.53,339.38 1130.83,340.95 1130.83,340.95 1122.27,342.21 1122.27,342.21 1122.27,342.21 1128.12,325.57 1128.12,325.57 1134.17,308.35 1133.47,297.17 1125.60,285.68 1123.27,282.29 1121.37,275.61 1121.37,270.84 1121.37,263.92 1119.95,262.15 1114.34,262.15 1110.48,262.15 1100.29,259.48 1091.70,256.22 1091.70,256.22 1076.09,250.29 1076.09,250.29 1076.09,250.29 1071.84,217.93 1071.84,217.93 1067.96,188.47 1068.07,184.22 1073.00,170.50 1076.06,161.98 1077.22,154.33 1075.67,152.90 1072.85,150.31 1036.88,143.72 1011.99,141.24 998.02,139.85 997.88,139.93 990.48,154.07 984.93,164.68 983.50,171.19 984.87,179.61 986.79,191.44 985.80,191.89 971.06,185.78 967.20,184.18 964.17,188.06 957.77,202.82 953.22,213.33 949.49,223.72 949.49,225.91 949.49,229.75 936.91,237.15 930.38,237.15 924.12,237.15 904.46,219.67 883.54,195.50 863.94,172.85 861.87,169.06 857.02,146.99 851.44,121.54 844.01,104.38 831.49,87.92 822.91,76.66 817.55,76.61 795.57,87.62 788.29,91.27 780.92,92.75 776.07,91.53 767.96,89.50 767.32,90.27 763.77,106.52 762.53,112.17 758.30,116.69 751.01,120.16 739.24,125.74 737.35,132.29 744.68,142.00 750.06,149.11 751.04,176.42 746.03,179.52 744.13,180.69 740.61,186.36 738.21,192.13 732.57,205.61 737.06,217.51 763.61,259.38 778.11,282.25 784.10,295.30 788.31,313.19 791.37,326.18 793.28,338.64 792.57,340.89 791.85,343.14 774.48,350.61 753.96,357.49 710.14,372.17 711.63,370.31 704.33,419.94 694.76,485.05 692.95,467.15 694.55,323.05 695.40,247.44 696.03,171.97 695.96,155.34 695.87,133.95 697.76,118.08 702.41,101.13 710.49,71.67 714.02,64.72 732.22,42.37 745.77,25.74 748.14,24.25 773.81,16.40 773.81,16.40 801.04,8.06 801.04,8.06 801.04,8.06 827.35,13.51 827.35,13.51 841.81,16.50 856.21,20.55 859.33,22.49 867.16,27.39 882.76,57.88 885.25,73.16 886.68,81.93 889.39,86.69 894.15,88.79 898.75,90.82 901.60,95.57 902.84,103.32 904.85,115.90 920.69,139.24 924.36,135.05 925.61,133.61 929.77,124.51 933.60,114.81 933.60,114.81 940.56,97.19 940.56,97.19 940.56,97.19 963.90,93.71 963.90,93.71 1005.59,87.51 1019.93,88.88 1042.31,101.18 1053.26,107.20 1064.62,112.13 1067.57,112.13 1083.56,112.17 1101.27,133.55 1111.58,165.26 1113.53,171.27 1132.00,195.89 1152.62,219.96 1187.30,260.45 1199.29,279.92 1194.40,287.84 1189.77,295.33 1201.57,308.58 1228.60,326.23 1249.63,339.96 1258.67,347.91 1262.35,355.93 1274.96,383.38 1286.83,406.30 1300.43,429.45 1300.43,429.45 1315.15,454.52 1315.15,454.52 1315.15,454.52 1320.19,503.66 1320.19,503.66 1324.82,548.72 1324.83,558.02 1320.28,615.43 1315.67,673.68 1314.77,678.77 1307.42,688.42 1297.39,701.57 1297.40,713.56 1307.45,728.07 1313.47,736.75 1316.84,748.52 1321.37,776.68 1324.66,797.12 1329.11,823.35 1331.26,834.97 1334.38,851.85 1334.39,858.75 1331.27,869.35 1329.12,876.64 1320.37,916.37 1311.81,957.63 1293.15,1047.66 1295.01,1041.39 1282.83,1055.18 1277.39,1061.33 1268.73,1074.22 1263.57,1083.82 1258.01,1094.17 1249.75,1104.08 1243.26,1108.19 1216.45,1125.18 1214.64,1127.53 1215.54,1144.38 1215.54,1144.38 1216.36,1159.95 1216.36,1159.95 1216.36,1159.95 1196.87,1173.20 1196.87,1173.20 1186.15,1180.49 1168.65,1188.91 1157.97,1191.93 1093.24,1210.20 1080.32,1212.59 1058.87,1210.23 1058.87,1210.23 1058.87,1210.23 1058.87,1210.23 Z M 71.28,1085.00 C 71.27,1081.99 69.19,1075.56 66.66,1070.72 64.14,1065.87 62.39,1058.94 62.78,1055.30 63.32,1050.25 61.27,1048.21 54.11,1046.66 33.50,1042.19 20.19,1031.95 10.73,1013.26 4.24,1000.44 4.31,990.88 10.94,983.55 15.35,978.68 15.63,976.06 12.67,967.67 0.55,933.31 -2.21,899.01 6.29,888.28 8.14,885.94 7.99,882.26 5.88,878.33 1.18,869.53 1.21,869.46 14.55,861.04 21.16,856.87 28.46,848.87 30.78,843.26 34.59,834.06 34.44,832.73 29.26,829.70 11.23,819.17 8.65,814.53 3.50,783.38 -1.29,754.43 -1.26,752.28 4.19,740.20 11.63,723.69 23.99,713.55 43.88,707.65 65.95,701.09 74.64,701.49 76.64,709.13 80.01,722.01 101.95,716.18 125.76,696.09 127.45,694.66 126.24,690.99 122.85,687.24 117.38,681.19 114.83,680.95 77.42,682.92 77.42,682.92 37.79,685.01 37.79,685.01 37.79,685.01 25.24,668.16 25.24,668.16 0.99,635.59 0.59,632.36 10.20,545.47 17.18,482.42 19.20,471.78 29.13,446.08 35.24,430.26 40.87,411.05 41.65,403.40 43.53,384.74 60.49,356.60 75.32,347.51 77.59,346.12 84.17,338.31 89.95,330.16 98.91,317.52 104.11,313.84 125.31,305.17 142.18,298.27 150.98,292.85 152.72,288.29 154.61,283.30 158.75,281.13 168.76,279.86 176.17,278.93 185.64,277.72 189.80,277.19 196.03,276.39 197.84,278.01 200.05,286.38 203.06,297.76 203.65,297.93 223.05,293.04 239.04,289.01 240.47,284.16 229.06,272.75 229.06,272.75 221.19,264.88 221.19,264.88 221.19,264.88 227.50,250.62 227.50,250.62 235.24,233.12 235.44,227.79 228.34,227.72 216.22,227.62 214.30,223.21 220.72,210.27 224.05,203.57 231.47,186.13 237.20,171.52 246.03,149.05 250.84,141.75 268.53,124.06 284.10,108.49 292.91,102.23 303.03,99.55 310.51,97.57 320.14,92.72 324.44,88.78 348.96,66.30 382.43,55.40 429.13,54.71 456.92,54.30 457.27,54.20 458.20,46.23 458.96,39.71 463.50,35.92 481.96,26.42 503.03,15.58 505.73,14.94 516.97,18.06 535.53,23.21 545.06,22.22 562.63,13.32 589.13,-0.11 617.09,7.62 629.72,31.88 641.26,54.05 642.95,75.67 643.04,201.87 643.09,269.28 644.02,331.98 645.10,341.19 646.89,356.39 642.07,417.78 637.96,432.14 634.52,444.18 631.60,430.27 633.11,409.04 634.41,390.95 633.61,385.99 627.94,376.81 620.23,364.34 607.36,357.40 586.11,354.27 573.81,352.45 569.26,349.80 560.13,339.15 560.13,339.15 549.07,326.23 549.07,326.23 549.07,326.23 558.76,322.27 558.76,322.27 571.50,317.05 573.67,310.37 565.48,301.65 556.67,292.27 557.09,290.29 567.87,290.29 577.07,290.29 580.71,285.78 580.71,274.40 580.71,270.41 582.88,268.41 587.21,268.41 593.73,268.41 621.34,243.51 621.34,237.62 621.34,235.88 615.75,226.05 608.91,215.76 602.08,205.47 594.15,192.14 591.28,186.13 591.28,186.13 586.07,175.20 586.07,175.20 586.07,175.20 597.67,161.05 597.67,161.05 607.50,149.05 608.74,145.92 605.82,140.46 603.03,135.25 603.69,132.25 609.31,124.65 616.16,115.39 616.18,115.08 610.83,98.13 606.64,84.83 606.22,79.51 608.94,74.43 613.84,65.27 610.71,59.45 598.04,54.15 582.89,47.82 572.16,48.33 569.89,55.48 568.86,58.72 564.05,62.16 559.19,63.13 550.33,64.90 546.03,71.79 541.89,90.83 540.56,96.94 535.58,101.63 523.66,108.02 506.30,117.32 505.26,118.83 485.60,163.01 472.98,191.35 467.29,194.99 428.04,199.78 394.10,203.93 370.52,207.83 365.00,210.21 361.81,211.59 358.53,209.38 355.05,203.49 351.37,197.25 341.23,190.79 320.05,181.18 303.64,173.74 288.35,168.37 286.07,169.25 283.78,170.13 278.47,177.42 274.27,185.45 274.27,185.45 266.62,200.05 266.62,200.05 266.62,200.05 273.31,205.54 273.31,205.54 281.09,211.92 278.96,218.69 265.62,229.98 265.62,229.98 257.47,236.89 257.47,236.89 257.47,236.89 264.94,244.84 264.94,244.84 264.94,244.84 272.41,252.79 272.41,252.79 272.41,252.79 265.23,267.17 265.23,267.17 259.69,278.27 258.47,284.62 259.89,295.00 261.27,305.08 260.51,309.46 256.82,312.52 253.00,315.69 252.24,320.81 253.39,335.48 254.64,351.33 253.43,357.82 245.86,375.90 245.86,375.90 236.84,397.43 236.84,397.43 236.84,397.43 246.26,412.12 246.26,412.12 260.85,434.86 260.34,435.94 224.84,457.31 205.32,469.07 204.48,469.26 181.09,467.60 164.74,466.44 151.84,463.37 140.05,457.83 112.72,444.99 110.08,445.71 71.89,476.27 58.14,487.27 46.30,503.83 46.30,512.07 46.30,513.59 50.87,515.82 56.45,517.01 72.24,520.39 81.69,530.95 68.95,530.98 59.57,531.01 45.42,544.73 44.57,554.65 44.13,559.67 41.97,568.24 39.76,573.69 35.18,584.98 39.39,593.48 49.55,593.48 53.72,593.48 56.93,598.92 62.04,614.58 70.37,640.15 75.11,646.28 82.08,640.50 84.74,638.28 86.92,633.13 86.92,629.04 86.92,620.30 88.64,620.04 103.94,626.43 114.17,630.71 117.45,630.73 133.23,626.67 160.17,619.73 164.96,617.32 186.93,599.57 213.92,577.76 223.43,574.25 260.37,572.49 310.81,570.09 325.26,579.43 325.47,614.54 325.63,641.30 320.91,655.26 307.23,668.52 301.26,674.31 295.57,683.35 294.59,688.62 292.09,702.01 298.48,738.75 305.81,753.12 310.93,763.16 311.94,771.56 311.94,804.08 311.94,804.08 311.94,843.02 311.94,843.02 311.94,843.02 278.92,871.41 278.92,871.41 254.80,892.15 243.64,899.78 237.51,899.72 229.15,899.63 229.17,899.59 241.62,888.37 248.50,882.17 258.69,872.95 264.28,867.88 278.51,854.96 279.44,837.42 266.53,825.44 262.28,821.50 258.82,815.87 258.84,812.94 258.85,810.00 257.21,783.47 255.19,753.99 251.94,706.73 252.10,698.41 256.52,683.66 259.28,674.46 263.14,652.31 265.10,634.43 268.44,603.89 268.29,601.57 262.64,595.92 256.70,589.98 256.50,590.02 247.15,599.37 241.94,604.58 233.36,616.49 228.09,625.84 216.24,646.83 206.46,654.01 180.56,660.69 169.45,663.56 157.91,668.11 154.90,670.81 144.22,680.39 149.21,703.28 168.57,733.49 176.65,746.11 176.93,765.08 169.28,782.05 169.28,782.05 163.76,794.29 163.76,794.29 163.76,794.29 175.48,803.70 175.48,803.70 181.92,808.87 189.24,817.06 191.75,821.91 196.34,830.80 198.00,853.31 194.32,856.98 193.23,858.07 183.04,846.00 171.67,830.15 171.67,830.15 150.99,801.34 150.99,801.34 150.99,801.34 150.99,778.75 150.99,778.75 150.99,758.20 150.28,755.66 143.18,750.67 128.96,740.69 57.79,745.55 43.96,757.46 35.90,764.38 35.82,764.81 40.97,772.68 43.89,777.14 54.68,786.48 64.94,793.46 81.81,804.91 83.33,806.84 80.78,813.56 76.42,825.04 80.11,834.16 89.13,834.16 94.13,834.16 101.48,838.92 109.97,847.65 117.18,855.07 131.73,867.02 142.31,874.20 152.89,881.39 162.26,888.43 163.14,889.86 164.02,891.29 158.13,895.77 150.06,899.82 150.06,899.82 135.36,907.18 135.36,907.18 135.36,907.18 144.62,908.97 144.62,908.97 156.60,911.29 168.18,928.14 168.17,943.24 168.17,953.19 166.52,955.54 154.04,963.43 139.72,972.47 135.06,972.85 111.14,966.86 103.87,965.04 100.61,966.64 90.05,977.21 83.17,984.09 77.55,991.35 77.55,993.35 77.55,995.35 82.06,999.38 87.57,1002.31 93.09,1005.24 101.86,1011.73 107.06,1016.73 107.06,1016.73 116.53,1025.83 116.53,1025.83 116.53,1025.83 102.51,1031.87 102.51,1031.87 94.80,1035.19 84.97,1039.31 80.67,1041.01 80.67,1041.01 72.86,1044.11 72.86,1044.11 72.86,1044.11 85.36,1050.49 85.36,1050.49 92.24,1054.00 98.31,1057.26 98.86,1057.74 99.42,1058.22 95.20,1065.76 89.49,1074.48 78.98,1090.56 71.31,1094.98 71.28,1085.00 71.28,1085.00 71.28,1085.00 71.28,1085.00 Z --------------------------------------------------------------------------------