├── .gitignore ├── CAL ├── CALarea.m ├── CALconnectivity.m └── CALlength.m ├── CNN ├── CNN_model │ ├── CNN_model.ipynb │ ├── Create_test.ipynb │ ├── Create_training_all.ipynb │ ├── Create_validation.ipynb │ ├── Predict_CNN.ipynb │ ├── README.md │ ├── model.h5 │ ├── model.json │ └── mygenerator.py └── binarization.m ├── Frangi ├── binarization.m ├── frangi_runme.m ├── hyperpars_opt.m └── test_whole_image.m ├── Gabor ├── binarization.m ├── gabor_me.m ├── gabor_runme.m ├── hyperpars_opt.m ├── maxmorlet.m └── morlet.m ├── ML_binarization ├── ML_classifiers │ ├── RF.ipynb │ ├── SVM.ipynb │ ├── knn.ipynb │ └── performances.m └── create_train_test │ ├── create_test.m │ ├── create_train.m │ ├── image_avg.m │ ├── image_entropy.m │ ├── image_hess_eig.m │ ├── image_range.m │ └── image_std.m ├── OOF ├── OOF_runme.m ├── hyperpars_opt.m ├── performances.m └── test_whole_image.m ├── README.md ├── SCIRD-TS ├── binarization.m ├── hyperpars_opt.m ├── scirdts_runme.m └── test_whole_image.m ├── TopS ├── README.md ├── TopS.ipynb └── image2txt.m └── UNet ├── Unet model ├── Create_test_patches.ipynb ├── Create_training_patches.ipynb ├── Create_validation_patches.ipynb ├── Predict_Unet.ipynb ├── README.md ├── Unet_model.ipynb ├── model.h5 └── model.json └── binarization.m /.gitignore: -------------------------------------------------------------------------------- 1 | .ipynb_checkpoints 2 | -------------------------------------------------------------------------------- /CAL/CALarea.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/giaylenia/OCTA_segm_study/HEAD/CAL/CALarea.m -------------------------------------------------------------------------------- /CAL/CALconnectivity.m: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/giaylenia/OCTA_segm_study/HEAD/CAL/CALconnectivity.m 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