├── DESCRIPTION ├── Documentation.md ├── LICENSE ├── NAMESPACE ├── R ├── GOhuman.R ├── GOmouse.R ├── MetaNeighbor.R ├── MetaNeighborUS.R ├── graph_visualization.R ├── meta_clusters.R ├── mn_data.R ├── neighborVoting.R ├── preprocessing.R ├── split_data.R ├── topHits.R ├── trainModel.R ├── utility.R ├── variableGenes.R └── visualization.R ├── README.md ├── data ├── GOhuman.rda ├── GOmouse.RData ├── datalist └── mn_data.RData ├── inst ├── CITATION └── NEWS ├── man ├── GOhuman.Rd ├── GOmouse.Rd ├── MetaNeighbor.Rd ├── MetaNeighborUS.Rd ├── extendClusterSet.Rd ├── extractMetaClusters.Rd ├── getCellType.Rd ├── getStudyId.Rd ├── ggPlotHeatmap.Rd ├── makeClusterGraph.Rd ├── makeClusterName.Rd ├── mergeSCE.Rd ├── mn_data.Rd ├── neighborVoting.Rd ├── orderCellTypes.Rd ├── plotBPlot.Rd ├── plotClusterGraph.Rd ├── plotDotPlot.Rd ├── plotHeatmap.Rd ├── plotHeatmapPretrained.Rd ├── plotMetaClusters.Rd ├── plotUpset.Rd ├── scoreMetaClusters.Rd ├── splitClusters.Rd ├── splitTestClusters.Rd ├── 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