├── .github └── workflows │ └── test.yml ├── .gitignore ├── LICENSE ├── MANIFEST.in ├── README.md ├── conda_env.yml ├── docs ├── Makefile ├── build │ ├── doctrees │ │ ├── ModelMetrics.doctree │ │ ├── data.doctree │ │ ├── environment.pickle │ │ ├── index.doctree │ │ ├── ml4bio.doctree │ │ ├── model.doctree │ │ └── model_metrics.doctree │ └── html │ │ ├── .buildinfo │ │ ├── ModelMetrics.html │ │ ├── _sources │ │ ├── ModelMetrics.rst.txt │ │ ├── data.rst.txt │ │ ├── index.rst.txt │ │ ├── ml4bio.rst.txt │ │ ├── model.rst.txt │ │ └── model_metrics.rst.txt │ │ ├── _static │ │ ├── ajax-loader.gif │ │ ├── alabaster.css │ │ ├── basic.css │ │ ├── comment-bright.png │ │ ├── comment-close.png │ │ ├── comment.png │ │ ├── custom.css │ │ ├── doctools.js │ │ ├── documentation_options.js │ │ ├── down-pressed.png │ │ ├── down.png │ │ ├── file.png │ │ ├── jquery-3.2.1.js │ │ ├── jquery.js │ │ ├── minus.png │ │ ├── plus.png │ │ ├── pygments.css │ │ ├── searchtools.js │ │ ├── underscore-1.3.1.js │ │ ├── underscore.js │ │ ├── up-pressed.png │ │ ├── up.png │ │ └── websupport.js │ │ ├── data.html │ │ ├── genindex.html │ │ ├── index.html │ │ ├── ml4bio.html │ │ ├── model.html │ │ ├── model_metrics.html │ │ ├── objects.inv │ │ ├── py-modindex.html │ │ ├── search.html │ │ └── searchindex.js ├── make.bat └── source │ ├── conf.py │ ├── data.rst │ ├── index.rst │ ├── ml4bio.rst │ ├── model.rst │ └── model_metrics.rst ├── ml4bio ├── __init__.py ├── data.py ├── icons │ ├── dt.png │ ├── knn.png │ ├── lr.png │ ├── nb.png │ ├── nn.png │ ├── none.png │ ├── open.png │ ├── rf.png │ ├── save.png │ └── svm.png ├── ml4bio.py ├── model.py └── model_metrics.py └── setup.py /.github/workflows/test.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/.github/workflows/test.yml -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/LICENSE -------------------------------------------------------------------------------- /MANIFEST.in: -------------------------------------------------------------------------------- 1 | include ml4bio/icons/*.png 2 | -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/README.md -------------------------------------------------------------------------------- /conda_env.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/conda_env.yml -------------------------------------------------------------------------------- /docs/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/Makefile -------------------------------------------------------------------------------- /docs/build/doctrees/ModelMetrics.doctree: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/doctrees/ModelMetrics.doctree -------------------------------------------------------------------------------- /docs/build/doctrees/data.doctree: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/doctrees/data.doctree -------------------------------------------------------------------------------- /docs/build/doctrees/environment.pickle: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/doctrees/environment.pickle -------------------------------------------------------------------------------- /docs/build/doctrees/index.doctree: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/doctrees/index.doctree -------------------------------------------------------------------------------- /docs/build/doctrees/ml4bio.doctree: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/doctrees/ml4bio.doctree -------------------------------------------------------------------------------- /docs/build/doctrees/model.doctree: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/doctrees/model.doctree -------------------------------------------------------------------------------- /docs/build/doctrees/model_metrics.doctree: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/doctrees/model_metrics.doctree -------------------------------------------------------------------------------- /docs/build/html/.buildinfo: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/.buildinfo -------------------------------------------------------------------------------- /docs/build/html/ModelMetrics.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/ModelMetrics.html -------------------------------------------------------------------------------- /docs/build/html/_sources/ModelMetrics.rst.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_sources/ModelMetrics.rst.txt -------------------------------------------------------------------------------- /docs/build/html/_sources/data.rst.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_sources/data.rst.txt -------------------------------------------------------------------------------- /docs/build/html/_sources/index.rst.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_sources/index.rst.txt -------------------------------------------------------------------------------- /docs/build/html/_sources/ml4bio.rst.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_sources/ml4bio.rst.txt -------------------------------------------------------------------------------- /docs/build/html/_sources/model.rst.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_sources/model.rst.txt -------------------------------------------------------------------------------- /docs/build/html/_sources/model_metrics.rst.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_sources/model_metrics.rst.txt -------------------------------------------------------------------------------- /docs/build/html/_static/ajax-loader.gif: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/ajax-loader.gif -------------------------------------------------------------------------------- /docs/build/html/_static/alabaster.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/alabaster.css -------------------------------------------------------------------------------- /docs/build/html/_static/basic.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/basic.css -------------------------------------------------------------------------------- /docs/build/html/_static/comment-bright.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/comment-bright.png -------------------------------------------------------------------------------- /docs/build/html/_static/comment-close.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/comment-close.png -------------------------------------------------------------------------------- /docs/build/html/_static/comment.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/comment.png -------------------------------------------------------------------------------- /docs/build/html/_static/custom.css: -------------------------------------------------------------------------------- 1 | /* This file intentionally left blank. */ 2 | -------------------------------------------------------------------------------- /docs/build/html/_static/doctools.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/doctools.js -------------------------------------------------------------------------------- /docs/build/html/_static/documentation_options.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/documentation_options.js -------------------------------------------------------------------------------- /docs/build/html/_static/down-pressed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/down-pressed.png -------------------------------------------------------------------------------- /docs/build/html/_static/down.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/down.png -------------------------------------------------------------------------------- /docs/build/html/_static/file.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/file.png -------------------------------------------------------------------------------- /docs/build/html/_static/jquery-3.2.1.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/jquery-3.2.1.js -------------------------------------------------------------------------------- /docs/build/html/_static/jquery.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/jquery.js -------------------------------------------------------------------------------- /docs/build/html/_static/minus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/minus.png -------------------------------------------------------------------------------- /docs/build/html/_static/plus.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/plus.png -------------------------------------------------------------------------------- /docs/build/html/_static/pygments.css: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/pygments.css -------------------------------------------------------------------------------- /docs/build/html/_static/searchtools.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/searchtools.js -------------------------------------------------------------------------------- /docs/build/html/_static/underscore-1.3.1.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/underscore-1.3.1.js -------------------------------------------------------------------------------- /docs/build/html/_static/underscore.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/underscore.js -------------------------------------------------------------------------------- /docs/build/html/_static/up-pressed.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/up-pressed.png -------------------------------------------------------------------------------- /docs/build/html/_static/up.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/up.png -------------------------------------------------------------------------------- /docs/build/html/_static/websupport.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/_static/websupport.js -------------------------------------------------------------------------------- /docs/build/html/data.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/data.html -------------------------------------------------------------------------------- /docs/build/html/genindex.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/genindex.html -------------------------------------------------------------------------------- /docs/build/html/index.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/index.html -------------------------------------------------------------------------------- /docs/build/html/ml4bio.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/ml4bio.html -------------------------------------------------------------------------------- /docs/build/html/model.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/model.html -------------------------------------------------------------------------------- /docs/build/html/model_metrics.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/model_metrics.html -------------------------------------------------------------------------------- /docs/build/html/objects.inv: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/objects.inv -------------------------------------------------------------------------------- /docs/build/html/py-modindex.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/py-modindex.html -------------------------------------------------------------------------------- /docs/build/html/search.html: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/search.html -------------------------------------------------------------------------------- /docs/build/html/searchindex.js: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/build/html/searchindex.js -------------------------------------------------------------------------------- /docs/make.bat: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/make.bat -------------------------------------------------------------------------------- /docs/source/conf.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/source/conf.py -------------------------------------------------------------------------------- /docs/source/data.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/source/data.rst -------------------------------------------------------------------------------- /docs/source/index.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/source/index.rst -------------------------------------------------------------------------------- /docs/source/ml4bio.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/source/ml4bio.rst -------------------------------------------------------------------------------- /docs/source/model.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/source/model.rst -------------------------------------------------------------------------------- /docs/source/model_metrics.rst: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/docs/source/model_metrics.rst -------------------------------------------------------------------------------- /ml4bio/__init__.py: -------------------------------------------------------------------------------- 1 | __version__ = '0.1.6' 2 | -------------------------------------------------------------------------------- /ml4bio/data.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/data.py -------------------------------------------------------------------------------- /ml4bio/icons/dt.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/icons/dt.png -------------------------------------------------------------------------------- /ml4bio/icons/knn.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/icons/knn.png -------------------------------------------------------------------------------- /ml4bio/icons/lr.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/icons/lr.png -------------------------------------------------------------------------------- /ml4bio/icons/nb.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/icons/nb.png -------------------------------------------------------------------------------- /ml4bio/icons/nn.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/icons/nn.png -------------------------------------------------------------------------------- /ml4bio/icons/none.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/icons/none.png -------------------------------------------------------------------------------- /ml4bio/icons/open.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/icons/open.png -------------------------------------------------------------------------------- /ml4bio/icons/rf.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/icons/rf.png -------------------------------------------------------------------------------- /ml4bio/icons/save.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/icons/save.png -------------------------------------------------------------------------------- /ml4bio/icons/svm.png: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/icons/svm.png -------------------------------------------------------------------------------- /ml4bio/ml4bio.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/ml4bio.py -------------------------------------------------------------------------------- /ml4bio/model.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/model.py -------------------------------------------------------------------------------- /ml4bio/model_metrics.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/ml4bio/model_metrics.py -------------------------------------------------------------------------------- /setup.py: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gitter-lab/ml4bio/HEAD/setup.py --------------------------------------------------------------------------------