├── .gitignore ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── LICENSE ├── README.md ├── docs ├── README.md └── _config.yml ├── environment.yml ├── scientific_python.pptx ├── scientific_python_linux64_conda_specs.txt └── source-code ├── README.md ├── birdsong ├── README.md ├── Sound │ ├── bluejay_2.wav │ ├── redwing.wav │ └── rob.wav ├── analyse.py ├── create_signal.py ├── denoise.py └── sound_plot.py ├── bokeh ├── .gitignore ├── HIVseries.csv ├── README.md ├── bokeh_intro.ipynb ├── function_plot.py ├── ising.py ├── pendulum.ipynb └── viral_load.ipynb ├── cannon.ipynb ├── cellular_automata.ipynb ├── diffusion_limited_aggregation.ipynb ├── hdf5 ├── .gitignore ├── README.md ├── add_array.py ├── add_table.py ├── c_data.h5 ├── compute_avg.py ├── create_table.py ├── data.h5 ├── environment.yml ├── h5py.ipynb ├── particle.py ├── query_table.py ├── read_large_dataset.py ├── test.h5 └── write_large_dataset.py ├── image-processing ├── .gitignore ├── Data │ ├── problem.jpg │ └── restored.jpg ├── README.md ├── analyze.py ├── bouncing_ball.avi ├── bouncing_ball_full.avi ├── capture.py ├── denoise.py ├── follow_ball.py ├── restoration.ipynb ├── segmentation.py └── split_scenes.py ├── ising_model.ipynb ├── ising_model_pure_python.ipynb ├── lennard_jones.ipynb ├── manim ├── .gitignore ├── README.md ├── environment.yml └── square_and_circle.py ├── matplotlib ├── README.md ├── animation.py ├── distribution_plot.py ├── function_plot.py ├── gamma.txt ├── heatmap_plot.py ├── ising.py ├── spiral.py ├── surface_plot.py ├── top500.csv └── top500.ipynb ├── matrices ├── Makefile ├── README.md ├── blas_fortran.f90 ├── numpy_matmul.py ├── pure_c_matmul.c ├── pure_fortran_matmul.f90 └── pure_python_matmul.py ├── netcdf ├── README.md ├── environment.yml ├── netcdf_linux64_conda_specs.txt ├── read_netcdf.py ├── test.nc └── write_netcdf.py ├── numpy ├── .gitignore ├── README.md ├── broadcast.ipynb ├── coupled_pendulums.py ├── data.csv ├── data_plot.py ├── data_writer.py ├── diffusion.ipynb ├── dynamic_programming.ipynb ├── exponentiation.ipynb ├── fft.py ├── fft_experiments.ipynb ├── game_of_life.ipynb ├── genetic_drift.ipynb ├── indexing_arrays.ipynb ├── io_performance.ipynb ├── logistic_map.ipynb ├── numexpr.ipynb ├── numpy.ipynb ├── numpy_datatypes.ipynb ├── optimization.py ├── pendulum_ode.py ├── structured_arrays.ipynb ├── target_function_plot.py ├── to_numpy_or_not_to_numpy.ipynb ├── vector_sum.py └── vector_writer.py ├── prison_guard.ipynb ├── sympy ├── README.md ├── factorial_digits.ipynb ├── griffith_chapter_01.ipynb ├── img │ ├── double_pendulum.png │ ├── pendulum.png │ └── pendulums.pptx ├── pendulums.ipynb ├── plotting │ ├── README.md │ ├── environment.yml │ └── plotting_backends.ipynb ├── sympy.ipynb └── triple_six_puzzle.ipynb ├── vpython ├── README.md ├── double_pendulum.py ├── elastic_collistion.ipynb ├── environment.yml ├── pendulum.ipynb └── spring.ipynb └── xarray ├── .gitignore ├── README.md └── xarray_intro.ipynb /.gitignore: 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