├── .gitignore ├── LICENSE ├── README.md ├── crabs ├── docker_intro └── README.md ├── figures_readme ├── amplicon-length-figure.png ├── amplification-efficiency.png ├── crabs_blasttax.png ├── crabs_completeness.png ├── crabs_cutadapt_error.png ├── crabs_dereplicate.png ├── crabs_download_bold.png ├── crabs_download_metafishlib.png ├── crabs_download_mitofish.png ├── crabs_download_ncbi.png ├── crabs_download_ncbi_output.png ├── crabs_download_taxonomy.png ├── crabs_export.png ├── crabs_filter.png ├── crabs_greengenes.png ├── crabs_help.png ├── crabs_import.png ├── crabs_insilico.png ├── crabs_merge.png ├── crabs_midori.png ├── crabs_pga.png ├── crabs_silva.png ├── crabs_subset.png ├── diversity-figure.png ├── phylo_tree.png ├── unite_first.png ├── unite_second.png └── unite_third.png ├── function ├── __init__.py ├── __pycache__ │ ├── __init__.cpython-36.pyc │ ├── module_1.cpython-36.pyc │ ├── module_3.cpython-36.pyc │ └── module_5.cpython-36.pyc ├── crabs_functions.py └── older_versions │ ├── crabs_v1.0.0 │ ├── reference_database_creator_v2.1.py │ └── reference_database_creator_v2.py └── setup.py /.gitignore: -------------------------------------------------------------------------------- 1 | functions/module_1.py 2 | .DS_Store 3 | *.pyc 4 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gjeunen/reference_database_creator/HEAD/LICENSE -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gjeunen/reference_database_creator/HEAD/README.md -------------------------------------------------------------------------------- /crabs: -------------------------------------------------------------------------------- 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