├── .gitignore ├── 01-EHR ├── glossary.pdf └── project-patient-selection │ ├── student_project_submission.html │ ├── student_project_submission.ipynb │ ├── student_utils.py │ └── utils.py ├── 02-medical-imaging-2d ├── exercises │ ├── Exercise-01-image-intro-solution.ipynb │ ├── Exercise-01-image-intro.ipynb │ ├── Exercise-02-prioritization-solution.ipynb │ ├── Exercise-02-prioritization.ipynb │ ├── Exercise-03-accuracy-etc-solution.ipynb │ ├── Exercise-03-accuracy-etc.ipynb │ ├── Exercise-04-dicom-pixels-solution.ipynb │ ├── Exercise-04-dicom-pixels.ipynb │ ├── Exercise-05-dicom-info-solution.ipynb │ ├── Exercise-05-dicom-info.ipynb │ ├── Exercise-06-correlation-solution.ipynb │ ├── Exercise-06-correlation.ipynb │ ├── Exercise-07-otsu-classic-ml-solution.ipynb │ ├── Exercise-07-otsu-classic-ml.ipynb │ ├── Exercise-08-data-split-solution.ipynb │ ├── Exercise-08-data-split.ipynb │ ├── Exercise-09-silver-standard-solution.ipynb │ ├── Exercise-09-silver-standard.ipynb │ ├── Exercise-10-image-augmentation-solution.ipynb │ ├── Exercise-10-image-augmentation.ipynb │ ├── Exercise-11-vgg16-transfer-learning-solution.ipynb │ ├── Exercise-11-vgg16-transfer-learning.ipynb │ ├── Exercise-12-plot-loss-solution.ipynb │ ├── Exercise-12-plot-loss.ipynb │ ├── Exercise-13-fda-intended-use-solution.ipynb │ ├── Exercise-13-fda-intended-use.ipynb │ ├── Exercise-14-fda-algorithm-limitations-solution.ipynb │ ├── Exercise-14-fda-algorithm-limitations.ipynb │ ├── Exercise-15-precision-recall-roc-solution.ipynb │ └── Exercise-15-precision-recall-roc.ipynb └── project-chest-xray-pneumonia-detection │ ├── .gitignore │ ├── Build and train model.ipynb │ ├── EDA.ipynb │ ├── FDA_Submission.md │ ├── FDA_Submission.pdf │ ├── Inference.ipynb │ ├── README.md │ ├── distrib_other.png │ ├── distrib_pneumonia.png │ ├── f1_npv_etc.png │ ├── flowchart.png │ ├── model.png │ ├── model_architecture.png │ ├── model_vizualizer.py │ ├── pr_curve.png │ ├── roc_curve.png │ ├── sample_labels.csv │ ├── test1.dcm │ ├── test2.dcm │ ├── test3.dcm │ ├── test4.dcm │ ├── test5.dcm │ ├── test6.dcm │ ├── training_aug.png │ └── training_loss_accuracy.png ├── 03-medical-imaging-3d ├── exercises │ ├── 1-ai-definition-problem.ipynb │ ├── Exercise-01. CT backprojection.ipynb │ ├── Exercise-02. Volumetric rendering.ipynb │ ├── Exercise-03. Volume Dataset Analysis.ipynb │ ├── Exercise-04. Convolutions.ipynb │ ├── Exercise-05. Segmentation hands-on.ipynb │ ├── Exercise-06. Anonymization.ipynb │ ├── Tutorial-01. DICOM Volume EDA tutorial.ipynb │ ├── Tutorial-02. DICOM Dataset EDA tutorial.ipynb │ ├── dicom_mpr.py │ ├── dicom_to_png.py │ ├── images │ │ ├── dicom_instance.dcm │ │ ├── out_axial.png │ │ ├── out_coronal.png │ │ └── out_sagittal.png │ ├── measuring_performance.py │ ├── send_volume.py │ └── volume │ │ ├── 000000.dcm │ │ ├── 000001.dcm │ │ ├── 000002.dcm │ │ ├── 000003.dcm │ │ ├── 000004.dcm │ │ ├── 000005.dcm │ │ ├── 000006.dcm │ │ ├── 000007.dcm │ │ ├── 000008.dcm │ │ ├── 000009.dcm │ │ ├── 000010.dcm │ │ ├── 000011.dcm │ │ ├── 000012.dcm │ │ ├── 000013.dcm │ │ ├── 000014.dcm │ │ ├── 000015.dcm │ │ ├── 000016.dcm │ │ ├── 000017.dcm │ │ ├── 000018.dcm │ │ ├── 000019.dcm │ │ ├── 000020.dcm │ │ ├── 000021.dcm │ │ ├── 000022.dcm │ │ └── 000023.dcm └── project-hippocampus-volume-quantification │ ├── Section1-EDA │ ├── 01-eda-3d-slicer-01.png │ ├── 01-eda-3d-slicer-02.png │ ├── Final Project EDA.ipynb │ └── hippo-percentiles.png │ ├── Section2-Training │ ├── .gitignore │ ├── 02-training-tensorboard-01.png │ ├── 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