├── .gitignore ├── LICENSE ├── R ├── .gitignore ├── R_effective.R ├── Reff_voc.R ├── check_linelist.R ├── counterfactuals.R ├── explore_reff_samples.R ├── fit_reff_model_voc.R ├── forecasting_gi_prior.R ├── functions.R ├── intervention_effect_illustration.R ├── latent_social_distancing.R ├── lib.R ├── macrodistancing_change.R ├── microdistancing_change.R ├── microdistancing_change_old.R ├── mobility_change.R ├── movement_model.R ├── nsw_isolation_effect.R ├── parse_nsw_vaccination_data.R ├── pipeline.R ├── plot_reff_voc.R ├── proportion_voc_computation.R ├── reopening.R ├── rolling_delays.R ├── rolling_lockdown_simulator.R ├── run_historic_reffs.R ├── temp_reff_1_vaccine.R ├── uk_voc_infection_rate.R ├── uk_voc_infection_rate_delta.R ├── vacccination_effect.R ├── vaccination_data.R ├── vaccination_reff.R └── vaccination_single_dose.R ├── README.md ├── covid19_australia_distancing.Rproj ├── data ├── .gitignore ├── contacts │ ├── barometer │ │ └── .gitignore │ ├── contact_matrices_152_countries │ │ └── .gitignore │ └── freya_survey │ │ └── .gitignore ├── microdistancing │ └── .gitignore ├── parameters │ └── .gitignore └── survey_raw │ └── .gitignore ├── manuscript ├── distancing.bib └── ms.Rmd ├── outputs ├── .gitignore └── figures │ └── .gitignore └── pipeline_flowchart.gv /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/goldingn/covid19_australia_interventions/HEAD/.gitignore -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/goldingn/covid19_australia_interventions/HEAD/LICENSE -------------------------------------------------------------------------------- /R/.gitignore: -------------------------------------------------------------------------------- 1 | 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