├── .DS_Store ├── .gitignore ├── PCA ├── findImageSubsetStatistics.m ├── find_PCA_projections.m ├── makeMultiComponentPlot_radon_fromVecs.m └── onlineImagePCA_radon.m ├── README.md ├── README.txt ├── findEmbeddings.m ├── findPosturalEigenmodes.m ├── findProjections.m ├── findRadonPixels.m ├── findWavelets.m ├── parameters.txt ├── runAlignment.m ├── runEmbeddingSubSampling.m ├── runExample.m ├── runExample_noSubsampling.m ├── run_tSne.m ├── segmentation_alignment ├── alignImages_Radon_parallel_avi.m ├── alignTwoImages.m ├── align_subroutine_parallel_avi.m ├── basisImage.tiff ├── dftregistration.m └── segmentImage_combo.m ├── setRunParameters.m ├── t_sne ├── calculateKLCost.m ├── d2p_sparse.m ├── file_embeddingSubSampling.m ├── findPointDensity.m ├── findTDistributedProjections_fmin.m ├── findTemplatesFromData.m ├── returnCorrectSigma_sparse.m ├── returnTemplates.m ├── tsne_d.m └── tsne_p_sparse.m ├── utilities ├── argmax.m ├── argmin.m ├── autoFindThreshold_gmm.m ├── close_parpool.m ├── combineCells.m ├── derivative7.m ├── findAllImagesInFolders.m ├── findKLDivergences.m ├── findListKLDivergences.m ├── findWatershedRegions.m ├── gaussianfilterdata.m ├── gmixPlot.m ├── largeBWConnComp.m ├── rescaleImage.m ├── returnCellLengths.m ├── sampleFromMatrix.m ├── setup_parpool.m └── shuffledMatrix.m └── wavelet ├── fastWavelet_morlet_convolution_parallel.m └── morletConjFT.m /.DS_Store: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gordonberman/MotionMapper/HEAD/.DS_Store -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- 1 | runExample_smallData.m 2 | *.m~ 3 | -------------------------------------------------------------------------------- /PCA/findImageSubsetStatistics.m: -------------------------------------------------------------------------------- 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