├── .drone.sec ├── .drone.yml ├── .gitignore ├── Dockerfile ├── LICENSE ├── README.md ├── data ├── ssGSEA_lm22_genes.tsv └── validation_gbm_data.tsv ├── describe_data.R ├── download_gbm.sh ├── figures ├── TCGA_kaplanmeier_CD4.png ├── TCGA_kaplanmeier_CD8.png ├── TCGA_kaplanmeier_Macrophages.png ├── TCGA_kaplanmeier_subtypes.png ├── TCGA_kaplanmeier_tertiles_CD4.png ├── TCGA_kaplanmeier_tertiles_CD8.png ├── TCGA_kaplanmeier_tertiles_Macrophages.png ├── age_distribution.png ├── boxplot_validation_TCGA_summary.png ├── gender_distribution.png ├── ihc_tcga_macrophage_summary.png └── survival_distribution.png ├── generate_validation_figures.R ├── immune_survival.R ├── install.R ├── results ├── adjusted_IHC_model_CD163.tsv ├── adjusted_IHC_model_CD4.tsv ├── adjusted_IHC_model_CD68.tsv ├── adjusted_IHC_model_CD8.tsv ├── adjusted_TCGA_model_CD4.tsv ├── adjusted_TCGA_model_CD8.tsv ├── adjusted_TCGA_model_Macrophages.tsv ├── anova_summary_CD4.txt ├── anova_summary_CD8.txt ├── anova_summary_Macrophages.txt ├── ssGSEA_results.tsv ├── t_test_results_all.csv ├── ttest_results_CD4.tsv ├── ttest_results_CD8.tsv ├── ttest_results_Macrophages.tsv ├── unadjusted_IHC_model_CD163.tsv ├── unadjusted_IHC_model_CD4.tsv ├── unadjusted_IHC_model_CD68.tsv ├── unadjusted_IHC_model_CD8.tsv ├── unadjusted_TCGA_model_CD4.tsv ├── unadjusted_TCGA_model_CD8.tsv └── unadjusted_TCGA_model_Macrophages.tsv ├── run_pipeline.sh ├── sessionInfo.txt ├── ssGSEA_lm22.R └── util └── base_theme.R /.drone.sec: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/greenelab/gbm_immune_validation/HEAD/.drone.sec -------------------------------------------------------------------------------- /.drone.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/greenelab/gbm_immune_validation/HEAD/.drone.yml 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