├── .gitmodules ├── .travis.yml ├── LICENSE ├── Makefile ├── README.md ├── src ├── Makefile ├── PrefixTree.cpp ├── PrefixTree.h ├── RGAssign.cpp ├── RGAssign.h └── deML.cpp ├── testData ├── index.txt ├── todemultiplex.bam ├── todemultiplex.fq1.gz ├── todemultiplex.fq2.gz ├── todemultiplex.i1.gz └── todemultiplex.i2.gz └── webForm └── config.json /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/.gitmodules -------------------------------------------------------------------------------- /.travis.yml: -------------------------------------------------------------------------------- 1 | language: C++ 2 | script: make 3 | -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/Makefile -------------------------------------------------------------------------------- /README.md: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/README.md -------------------------------------------------------------------------------- /src/Makefile: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/src/Makefile -------------------------------------------------------------------------------- /src/PrefixTree.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/src/PrefixTree.cpp -------------------------------------------------------------------------------- /src/PrefixTree.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/src/PrefixTree.h -------------------------------------------------------------------------------- /src/RGAssign.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/src/RGAssign.cpp -------------------------------------------------------------------------------- /src/RGAssign.h: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/src/RGAssign.h -------------------------------------------------------------------------------- /src/deML.cpp: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/src/deML.cpp -------------------------------------------------------------------------------- /testData/index.txt: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/testData/index.txt -------------------------------------------------------------------------------- /testData/todemultiplex.bam: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/testData/todemultiplex.bam -------------------------------------------------------------------------------- /testData/todemultiplex.fq1.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/testData/todemultiplex.fq1.gz -------------------------------------------------------------------------------- /testData/todemultiplex.fq2.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/testData/todemultiplex.fq2.gz -------------------------------------------------------------------------------- /testData/todemultiplex.i1.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/testData/todemultiplex.i1.gz -------------------------------------------------------------------------------- /testData/todemultiplex.i2.gz: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/testData/todemultiplex.i2.gz -------------------------------------------------------------------------------- /webForm/config.json: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/grenaud/deML/HEAD/webForm/config.json --------------------------------------------------------------------------------