├── .circleci ├── config.yml └── setup_conda.sh ├── .gitignore ├── LICENSE.txt ├── README.md ├── bin ├── dsCompareCurves ├── dsComputeBEDDensity └── dsComputeGCCoverage ├── docs └── images │ ├── deepStats_logo.png │ ├── deepStats_plaquette.svg │ ├── dsCompareCurves_doc.png │ ├── dsCompareCurves_doc.svg │ ├── dsCompareCurves_galaxy.png │ └── tools.png ├── galaxy └── wrapper │ ├── datatypes_conf.xml │ ├── deepStats_macros.xml │ └── dsCompareCurves.xml ├── notebooks └── compareCurves.Rmd └── tests ├── input ├── deeptools_matrix.txt ├── genome.fa ├── genome.fa.fai ├── genome_genes.bed └── genome_genes_chrom.sizes ├── output ├── res_dsCompareCurves.dscc ├── res_dsCompareCurves_bootstraps.pdf ├── res_dsCompareCurves_wilcoxon.pdf ├── res_dsComputeBEDDensity.bedGraph └── res_dsComputeGCCoverage.bedGraph └── tests.R /.circleci/config.yml: -------------------------------------------------------------------------------- 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