├── .circ ├── .github └── workflows │ ├── ci.sh │ └── ci.yml ├── .gitignore ├── CHANGELOG.md ├── README.adoc ├── TODO.adoc ├── bin └── NRF.awk ├── chipseq-pipeline.nf ├── data ├── AWP.K4m3.1.fastq.gz ├── AWP.K4m3.2.fastq.gz ├── EL3.K4m3.1.fastq.gz ├── EL3.K4m3.2.fastq.gz ├── I.AWP.K4m3.1.fastq.gz ├── I.AWP.K4m3.2.fastq.gz ├── I.EL3.K4m3.1.fastq.gz ├── WLP.K36m3.1.fastq.gz ├── WLP.K36m3.2.fastq.gz ├── genome.fa ├── index.tsv ├── md5s ├── md5s-100 └── md5s-shift ├── docker └── Dockerfile ├── modules ├── bam.nf ├── common.nf ├── gem.nf ├── macs.nf ├── metrics.nf ├── ref.nf └── zerone.nf ├── nextflow.config └── scripts └── update-changelog.sh /.circ: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/guigolab/chip-nf/HEAD/.circ -------------------------------------------------------------------------------- /.github/workflows/ci.sh: -------------------------------------------------------------------------------- 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