├── .editorconfig ├── .flake8 ├── .gitignore ├── .isort.cfg ├── .pre-commit-config.yaml ├── .travis.yml ├── AUTHORS.rst ├── CONTRIBUTING.rst ├── HISTORY.rst ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.rst ├── docs ├── Analyse_hsa-miR-124a-3p_transfection_time-course.rst ├── GEOparse.rst ├── Makefile ├── authors.rst ├── conf.py ├── contributing.rst ├── history.rst ├── index.rst ├── installation.rst ├── introduction.rst ├── make.bat ├── modules.rst ├── output_20_0.png ├── output_43_1.png └── usage.rst ├── project.toml ├── requirements.txt ├── scripts └── geo2fastq ├── setup.py ├── src └── GEOparse │ ├── GEOTypes.py │ ├── GEOparse.py │ ├── __init__.py │ ├── downloader.py │ ├── logger.py │ ├── sra_downloader.py │ └── utils.py ├── tests ├── Analyse_hsa-miR-124a-3p_transfection_time-course.ipynb ├── GPL20814_family.soft ├── GPL4133.txt ├── GPL4134.txt ├── GSE105845_family.soft ├── GSE6207_experiments.tab ├── GSM2795971.txt ├── GSM32878.txt ├── __init__.py ├── pytest.ini ├── seed-mirza-g_all_mirnas_per_gene_scores_miR_124a.tab ├── soft_ex_family.txt ├── test_GEOparse.py ├── test_gsm_annotated.tab ├── test_merged_by_id_and_averaged_by_gb_acc.tab ├── test_sample_pivoted_by_value.tab └── test_sample_pivoted_by_value_and_annotated_by_gbacc.tab └── tox.ini /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/guma44/GEOparse/HEAD/.editorconfig -------------------------------------------------------------------------------- /.flake8: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/guma44/GEOparse/HEAD/.flake8 -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/guma44/GEOparse/HEAD/.gitignore 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