├── .travis.yml ├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── Functions.R ├── dada2.R ├── data.R ├── glmr.R ├── misc.R ├── plot.R └── zzz.R ├── README.md ├── data └── Physeq.rda ├── man ├── betadiv.Rd ├── betatest.Rd ├── biomarker.Rd ├── buildTree.Rd ├── data-Physeq.Rd ├── data-physeq.Rd ├── difftest.Rd ├── distcolor.Rd ├── do_aov.Rd ├── do_ttest.Rd ├── do_wilcox.Rd ├── dot-checkfile.Rd ├── dot-getstar.Rd ├── dot-lda.fun.Rd ├── glmr.Rd ├── ldamarker.Rd ├── lightcolor.Rd ├── normalize.Rd ├── otu_table.Rd ├── phy_tree.Rd ├── plotLDA.Rd ├── plotalpha.Rd ├── plotbar.Rd ├── plotbeta.Rd ├── plotdiff.Rd ├── plotmarker.Rd ├── plotquality.Rd ├── preRef.Rd ├── prefilter.Rd ├── processSeq.Rd ├── psmelt.Rd ├── richness.Rd ├── sample_data.Rd ├── subset_samples.Rd ├── subset_taxa.Rd └── tax_table.Rd ├── microbial.Rproj ├── tests ├── testthat.R └── testthat │ └── test-microbial.R └── vignettes └── microbial.Rmd /.travis.yml: 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