├── DESCRIPTION ├── LICENSE ├── NAMESPACE ├── R ├── 00-AllClasses.R ├── AllGenerics.R ├── data.R ├── enrich.R ├── limma.R ├── makeAnnot.R ├── misc.R ├── plot.R └── zzz.R ├── README.md ├── data ├── godata.rdata ├── kegg.rdata ├── module.rda ├── pathway.rda ├── pbmc.rda ├── pbmcs.rda └── sce_small.rda ├── dot.png ├── feature.png ├── heat.jpg ├── man ├── Annot-class.Rd ├── GSVA-class.Rd ├── Heatmap.Rd ├── buildAnnot-methods.Rd ├── buildMSIGDB.Rd ├── distcolor.Rd ├── dot-do_aov.Rd ├── dot-do_ttest.Rd ├── dot-do_wilcox.Rd ├── dot-get.quantile.Rd ├── dot-getann.Rd ├── dot-getmsig.Rd ├── dot-makeGOdata.Rd ├── dot-makeKOMdata.Rd ├── dot-makeKOdata.Rd ├── dot-makeROdata.Rd ├── dotPlot.Rd ├── featurePlot.Rd ├── findPathway.Rd ├── genes-GSVA-method.Rd ├── genes-methods.Rd ├── idconvert.Rd ├── lightcolor.Rd ├── msigdbinfo.Rd ├── pbmc.Rd ├── pbmcs.Rd ├── ridgePlot.Rd ├── sce_small.Rd ├── scgsva.Rd ├── set.cut.off.Rd ├── showData.Rd ├── sigPathway.Rd ├── spatialFeaturePlot.Rd ├── 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