├── .gitignore ├── ExampleData ├── command.sh ├── eh_example_smaller.vcf.gz ├── gangstr_example_smaller.vcf.gz └── hipstr_example_smaller.vcf.gz ├── Hipstr_correction.py ├── README.md ├── archive_ensembletr_datasets.md ├── ensembletr ├── __init__.py ├── main.py ├── recordcluster.py ├── tests │ ├── __init__.py │ ├── test_recordcluster.py │ └── test_utils.py ├── utils.py └── vcfio.py ├── hg38_info_full.bed ├── poetry.lock ├── preprocess-test.sh ├── pyproject.toml ├── pytest.ini └── scripts └── fix-ref ├── README.md ├── download.sh └── fix_ensembletr_snpstr_reference.py /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/gymrek-lab/EnsembleTR/HEAD/.gitignore -------------------------------------------------------------------------------- /ExampleData/command.sh: -------------------------------------------------------------------------------- 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