├── .github └── workflows │ ├── ci.yml │ ├── docker-publish.yml │ ├── publish.yml │ └── stale.yml ├── .gitignore ├── .howfairis.yml ├── CITATION.cff ├── CODE_OF_CONDUCT.md ├── CONTRIBUTING.md ├── DEVELOPMENT.md ├── Dockerfile ├── LICENSE ├── MANIFEST.in ├── README.md ├── examples ├── 3BZD.ic_model ├── 3BZD.pdb └── 3bzd.cif ├── pyproject.toml ├── src └── prodigy_prot │ ├── __init__.py │ ├── cli.py │ ├── data │ └── naccess.config │ └── modules │ ├── __init__.py │ ├── aa_properties.py │ ├── freesasa_tools.py │ ├── models.py │ ├── parsers.py │ ├── prodigy.py │ └── utils.py └── tests ├── __init__.py ├── test_data ├── 2oob.cif ├── 2oob.pdb ├── dataset.json └── dataset.tgz ├── test_parsers.py ├── test_prodigy.py └── test_utils.py /.github/workflows/ci.yml: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/haddocking/prodigy/HEAD/.github/workflows/ci.yml 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