├── .gitignore ├── .gitmodules ├── LICENSE ├── README.md ├── bash_scripts ├── array_pala_params.txt ├── array_rat_params_12x.txt ├── array_rat_params_8x.txt ├── infer_3090.sh ├── infer_3090_rat.sh ├── insilico_array.sh ├── pala_train.sh ├── rat_array.sh ├── train_3090.sh └── train_array.sh ├── ckpts └── crimson-frost-533_ckpt_epoch40.pth ├── config.yml ├── docs ├── rf-ulm_arch.svg └── rf-ulm_concept.svg ├── evaluate.py ├── install.sh ├── models ├── __init__.py ├── mspcn.py └── unet │ ├── __init__.py │ ├── sloun_model.py │ ├── sloun_model_adapt.py │ ├── sloun_parts.py │ ├── unet_model.py │ └── unet_parts.py ├── predict.py ├── requirements.txt ├── train.py └── utils ├── __init__.py ├── centroids.py ├── dice_score.py ├── dithering.py ├── download_frames.py ├── gauss.py ├── load_table_contents.py ├── nms_funs.py ├── plot_cross_sections.py ├── point_align.py ├── point_fusion.py ├── radial_pala.py ├── render_ulm.py ├── samples_points_map.py ├── srgb_conv.py ├── threshold.py ├── transform.py 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