├── .gitignore ├── Makefile ├── README ├── README.md ├── example ├── NC_000913-454.fna ├── NC_000913-454.test.ffn ├── NC_000913-454.test.gff ├── NC_000913.fna ├── NC_000913.test.454.5.ffn ├── NC_000913.test.454.5.gff ├── NC_000913.test.ffn ├── NC_000913.test.gff └── test.fna ├── fasta.c ├── fasta.h ├── hmm.h ├── hmm_lib.c ├── run_hmm.c ├── run_hmm.h ├── train ├── 454_10 ├── 454_30 ├── 454_5 ├── complete ├── gene ├── illumina_1 ├── illumina_10 ├── illumina_5 ├── noncoding ├── pwm ├── rgene ├── sanger_10 ├── sanger_5 ├── start ├── start1 ├── stop └── stop1 ├── util_lib.c └── util_lib.h /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hallamlab/FragGeneScanPlus/HEAD/.gitignore -------------------------------------------------------------------------------- /Makefile: -------------------------------------------------------------------------------- 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