├── .editorconfig ├── .gitignore ├── .travis.yml ├── CONTRIBUTING.rst ├── LICENSE ├── MANIFEST.in ├── Makefile ├── README.md ├── docs ├── Makefile ├── authors.rst ├── conf.py ├── contributing.rst ├── history.rst ├── index.rst ├── installation.rst ├── make.bat ├── readme.rst └── usage.rst ├── example ├── TCGA-55-6543.annotated.vcf └── TCGA-55-6543.vcf ├── requirements_dev.txt ├── setup.cfg ├── setup.py ├── tests ├── __init__.py └── test_vcf-annotate-polyphen.py ├── tox.ini ├── travis_pypi_setup.py └── vap ├── __init__.py ├── annotator.py └── cli.py /.editorconfig: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hammerlab/vcf-annotate-polyphen/HEAD/.editorconfig -------------------------------------------------------------------------------- /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/hammerlab/vcf-annotate-polyphen/HEAD/.gitignore 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