├── .gitignore ├── LICENSE.md ├── MANIFEST.in ├── README.md ├── boostnano ├── Sample.ipynb ├── __init__.py ├── _version.py ├── boostnano_eval.py ├── boostnano_input.py ├── boostnano_model.py ├── boostnano_resquiggle.py ├── boostnano_train.py ├── cache │ └── cache.csv ├── hand_label.py ├── hmm.cpp ├── hmm.h ├── hmm_test.py ├── model │ ├── __init__.py │ ├── checkpoint │ └── ckpt-8990 ├── test.py └── utils │ ├── cwDTW_nano │ ├── dataset.py │ ├── progress.py │ └── sam_op.py ├── requirements.txt ├── sample_data ├── sample.png ├── sample_0.fast5 ├── sample_1.fast5 ├── sample_2.fast5 ├── sample_3.fast5 └── sample_4.fast5 ├── setup.py └── training_data ├── RNA_GN125_Teng.csv ├── RNA_GN125_Yao.csv ├── result_soeyoung.csv ├── training.csv └── training_RNA_Nanopore_Yao.csv /.gitignore: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/haotianteng/BoostNano/HEAD/.gitignore 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