├── .gitmodules ├── LICENSE ├── Makefile ├── README.md ├── eval ├── README.md └── eval.py └── src ├── cwt.cc ├── cwt.h ├── cxxopts.hpp ├── event.h ├── fast_dtw.cc ├── fast_dtw.h ├── hdf5_tools.hpp ├── khash.h ├── kseq.h ├── nanoflann.hpp ├── output_tools.h ├── pore_model.cc ├── pore_model.h ├── sequence_batch.cc ├── sequence_batch.h ├── sigmap.cc ├── sigmap.h ├── sigmap_adaptor.h ├── signal_batch.cc ├── signal_batch.h ├── spatial_index.cc ├── spatial_index.h └── utils.h /.gitmodules: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/haowenz/sigmap/HEAD/.gitmodules -------------------------------------------------------------------------------- /LICENSE: -------------------------------------------------------------------------------- https://raw.githubusercontent.com/haowenz/sigmap/HEAD/LICENSE -------------------------------------------------------------------------------- /Makefile: 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